Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.7G250400 Prunus persica HOM05D005830 ORTHO05D007212 2.4e-221 771.9 406 100.0
RcHm_v2.0_Chr2g0087391 Rosa chinensis HOM05D005830 ORTHO05D007212 5.2e-160 568.2 408 77.5
MD02G1021100 Malus domestica HOM05D005830 ORTHO05D007212 1.1e-157 560.5 407 77.1
FAN23G1789 Fragaria x ananassa HOM05D005830 ORTHO05D007212 1.3e-155 553.5 406 74.9
FAN28G1643 Fragaria x ananassa HOM05D005830 ORTHO05D007212 3.0e-155 552.4 406 74.6
FvH4_1g02430 Fragaria vesca HOM05D005830 ORTHO05D007212 3.6e-153 545.4 406 74.1
FAN19G1317 Fragaria x ananassa HOM05D005830 ORTHO05D007212 3.6e-153 545.4 406 74.1
MD15G1164200 Malus domestica HOM05D005830 ORTHO05D007212 1.4e-152 543.5 406 75.1
QL02p090253 Quercus lobata HOM05D005830 ORTHO05D007212 4.0e-152 542.0 418 71.8
CiPaw.03G250100 Carya illinoinensis HOM05D005830 ORTHO05D007212 4.4e-151 538.5 410 71.7
Cfa002293 Carpinus fangiana HOM05D005830 ORTHO05D007212 9.2e-149 530.8 413 70.9
Haze_25480 Corylus avellana HOM05D005830 ORTHO05D007212 1.0e-147 527.3 413 70.2
Ciclev10008496m.g Citrus clementina HOM05D005830 ORTHO05D007212 2.3e-147 526.2 409 69.9
CiPaw.04G176400 Carya illinoinensis HOM05D005830 ORTHO05D007212 3.9e-147 525.4 410 70.2
Manes.06G045500 Manihot esculenta HOM05D005830 ORTHO05D007212 4.3e-146 521.9 406 68.2
Atru.chr7.1975 Acer truncatum HOM05D005830 ORTHO05D007212 1.6e-145 520.0 409 69.2
CANSAT11G0221 Cannabis sativa HOM05D005830 ORTHO05D007212 7.6e-143 511.1 419 69.7
Potri.006G063600 Populus trichocarpa HOM05D005830 ORTHO05D007212 1.3e-142 510.4 407 68.8
TWI63G1326 Tripterygium wilfordii HOM05D005830 ORTHO05D007212 4.9e-142 508.4 408 68.9
ClCG06G011670 Citrullus lanatus HOM05D005830 ORTHO05D007212 4.2e-141 505.4 408 67.9
Sabra06G0046300 Salix brachista HOM05D005830 ORTHO05D007212 3.5e-140 502.3 407 67.8
Potri.018G123400 Populus trichocarpa HOM05D005830 ORTHO05D007212 3.0e-139 499.2 407 68.8
Dinv41459 Davidia involucrata HOM05D005830 ORTHO05D007212 5.6e-138 495.0 405 65.9
Manes.14G117500 Manihot esculenta HOM05D005830 ORTHO05D007212 2.8e-137 492.7 395 67.6
Duzib150G0784 Durio zibethinus HOM05D005830 ORTHO05D007212 1.4e-136 490.3 404 66.8
Dinv36464 Davidia involucrata HOM05D005830 ORTHO05D007212 4.0e-136 488.8 402 65.9
Gorai.009G015000 Gossypium raimondii HOM05D005830 ORTHO05D007212 6.9e-136 488.0 406 64.5
TAR636G3280 Trochodendron aralioides HOM05D005830 ORTHO05D007212 1.5e-135 486.9 404 66.8
Aqoxy7G03615 Aquilegia oxysepala HOM05D005830 ORTHO05D007212 4.5e-135 485.3 401 64.6
CsaV3_1G027980 Cucumis sativus L. HOM05D005830 ORTHO05D007212 1.7e-134 483.4 406 64.5
GSVIVG01012831001 Vitis vinifera HOM05D005830 ORTHO05D007212 2.2e-134 483.0 397 66.8
Nn2g12145 Nelumbo nucifera HOM05D005830 ORTHO05D007212 1.9e-133 479.9 400 66.8
Thecc.09G135000 Theobroma cacao HOM05D005830 ORTHO05D007212 1.9e-133 479.9 406 67.0
MELO3C010295.2 Cucumis melo HOM05D005830 ORTHO05D007212 3.2e-133 479.2 406 64.5
Hma1.2p1_0497F.1_g166530 Hydrangea macrophylla HOM05D005830 ORTHO05D007212 7.1e-133 478.0 420 63.3
COL.COLO4_15558 Corchorus olitorius HOM05D005830 ORTHO05D007212 3.5e-132 475.7 407 65.6
Gohir.D05G014900 Gossypium hirsutum HOM05D005830 ORTHO05D007212 3.5e-132 475.7 406 64.0
Sed0009357 Sechium edule HOM05D005830 ORTHO05D007212 4.6e-132 475.3 399 64.9
Gohir.A05G013800 Gossypium hirsutum HOM05D005830 ORTHO05D007212 6.0e-132 474.9 406 63.8
Lalb_Chr13g0301421 Lupinus albus HOM05D005830 ORTHO05D007212 6.0e-132 474.9 397 63.5
Sabra18G0105100 Salix brachista HOM05D005830 ORTHO05D007212 1.0e-131 474.2 407 66.1
Cpa.g.sc46.60 Carica papaya HOM05D005830 ORTHO05D007212 2.3e-131 473.0 406 64.8
TAR625G0228 Trochodendron aralioides HOM05D005830 ORTHO05D007212 1.1e-130 470.7 404 65.3
vmacro06159 Vaccinium macrocarpon HOM05D005830 ORTHO05D007212 2.4e-128 463.0 406 63.1
Eucgr.C00582 Eucalyptus grandis HOM05D005830 ORTHO05D007212 4.5e-127 458.8 402 63.4
Nn8g39584 Nelumbo nucifera HOM05D005830 ORTHO05D007212 3.8e-126 455.7 398 64.8
Sc08g0006200 Simmondsia chinensis HOM05D005830 ORTHO05D007212 2.7e-124 449.5 411 62.3
Lj9A701G52 Lonicera japonica HOM05D005830 ORTHO05D007212 3.5e-124 449.1 399 63.9
arahy.Tifrunner.gnm1.ann1.N1L3G9 Arachis hypogaea HOM05D005830 ORTHO05D007212 1.8e-123 446.8 407 62.2
Ah.09g224370 Amaranthus hybridus HOM05D005830 ORTHO05D007212 1.4e-117 427.2 409 59.9
Peaxi162Scf00088g00106 Petunia axillaris HOM05D005830 ORTHO05D007212 1.4e-117 427.2 429 56.9
Nitab4.5_0000704g0010 Nicotiana tabacum HOM05D005830 ORTHO05D007212 1.2e-116 424.1 417 56.4
EL10Ac8g18756 Beta vulgaris HOM05D005830 ORTHO05D007212 6.0e-116 421.8 407 57.7
Nitab4.5_0002267g0050 Nicotiana tabacum HOM05D005830 ORTHO05D007212 1.0e-115 421.0 411 56.4
PGR142G1093 Punica granatum HOM05D005830 ORTHO05D007212 2.3e-115 419.9 388 60.3
MBI14_g38128_MAGBIO Magnolia biondii HOM05D005830 ORTHO05D007212 6.7e-115 418.3 406 57.6
Phvul.003G170800 Phaseolus vulgaris HOM05D005830 ORTHO05D007212 4.3e-114 415.6 402 57.7
VMungo1215G0722 Vigna mungo HOM05D005830 ORTHO05D007212 1.4e-112 410.6 402 57.5
AUR62013287 Chenopodium quinoa HOM05D005830 ORTHO05D007212 9.0e-112 407.9 411 58.2
Lsat_1_v5_gn_5_93541 Lactuca sativa HOM05D005830 ORTHO05D007212 4.5e-111 405.6 412 56.3
Glyma.17G109300 Glycine max HOM05D005830 ORTHO05D007212 1.3e-110 404.1 404 58.4
DCAR_020892 Daucus carota HOM05D005830 ORTHO05D007212 8.5e-110 401.4 401 57.6
Cc06_g07840 Coffea canephora HOM05D005830 ORTHO05D007212 6.7e-107 391.7 410 53.7
HanXRQChr10g0314411 Helianthus annuus HOM05D005830 ORTHO05D007212 1.8e-104 383.6 411 54.7
Lj4g0000922 Lotus japonicus HOM05D005830 ORTHO05D007212 3.4e-103 379.4 396 56.3
HanXRQChr12g0356861 Helianthus annuus HOM05D005830 ORTHO05D007212 2.2e-102 376.7 414 52.9
CAN.G1382.7 Capsicum annuum HOM05D005830 ORTHO05D007212 1.1e-101 374.4 464 48.7
Ca_21656_v3 Cicer arietinum L. HOM05D005830 ORTHO05D007212 4.2e-101 372.5 395 53.9
TPR.G956 Trifolium pratense HOM05D005830 ORTHO05D007212 1.1e-96 357.8 395 53.2
PGSC0003DMG400030680 Solanum tuberosum HOM05D005830 ORTHO05D007212 2.6e-95 353.2 377 54.9
Sopen07g003650 Solanum pennellii HOM05D005830 ORTHO05D007212 3.5e-95 352.8 381 54.1
Solyc07g007660.1 Solanum lycopersicum HOM05D005830 ORTHO05D007212 5.0e-94 349.0 381 53.5
Psat4g036280 Pisum sativum HOM05D005830 ORTHO05D007212 8.0e-92 341.7 396 50.5
QL02p021141 Quercus lobata HOM05D005830 ORTHO05D007212 1.0e-91 341.3 408 49.3
Aqoxy4G01850 Aquilegia oxysepala HOM05D005830 ORTHO05D007212 2.3e-91 340.1 292 61.3
Medtr4g115690 Medicago truncatula HOM05D005830 ORTHO05D007212 5.2e-91 339.0 371 52.6
vmacro05164 Vaccinium macrocarpon HOM05D005830 ORTHO05D007212 4.4e-90 335.9 391 49.6
Dinv05006 Davidia involucrata HOM05D005830 ORTHO05D007212 9.7e-90 334.7 401 50.1
MSTRG.10652 Avicennia marina HOM05D005830 ORTHO05D007212 7.0e-88 328.6 419 48.0
Rhsim03G0252000 Rhododendron simsii HOM05D005830 ORTHO05D007212 7.0e-88 328.6 273 65.9
Gohir.D05G058400 Gossypium hirsutum HOM05D005830 ORTHO05D007212 1.0e-86 324.7 404 49.0
Gorai.009G059500 Gossypium raimondii HOM05D005830 ORTHO05D007212 1.0e-86 324.7 404 49.0
CiPaw.08G009900 Carya illinoinensis HOM05D005830 ORTHO05D007212 1.7e-86 323.9 409 48.4
CiPaw.07G225200 Carya illinoinensis HOM05D005830 ORTHO05D007212 2.2e-86 323.6 395 47.1
Sabra06G0201100 Salix brachista HOM05D005830 ORTHO05D007212 1.9e-85 320.5 407 46.9
Rhsim07G0159800 Rhododendron simsii HOM05D005830 ORTHO05D007212 7.2e-85 318.5 406 47.3
Prupe.1G483400 Prunus persica HOM05D005830 ORTHO05D007212 2.7e-84 316.6 408 46.6
Ciclev10010445m.g Citrus clementina HOM05D005830 ORTHO05D007212 8.0e-84 315.1 400 47.2
Manes.16G124200 Manihot esculenta HOM05D002641 ORTHO05D001537 1.4e-83 314.3 389 47.8
COL.COLO4_18887 Corchorus olitorius HOM05D005830 ORTHO05D007212 1.7e-81 307.4 403 45.9
TPR.G3136 Trifolium pratense HOM05D005830 ORTHO05D007212 2.2e-81 307.0 398 48.0
Potri.006G256900 Populus trichocarpa HOM05D005830 ORTHO05D007212 4.8e-81 305.8 407 47.2
Medtr3g106630 Medicago truncatula HOM05D005830 ORTHO05D007212 6.3e-81 305.4 409 46.5
Oeu052743.1 Olea europaea HOM05D005830 ORTHO05D007212 8.3e-81 305.1 401 45.1
ATR0800G042 Amborella trichopoda HOM05D005830 ORTHO05D007212 1.8e-80 303.9 396 48.5
Cfa013122 Carpinus fangiana HOM05D005830 ORTHO05D007212 3.1e-80 303.1 400 44.8
Thecc.09G021700 Theobroma cacao HOM05D005830 ORTHO05D007212 7.0e-80 302.0 403 45.7
Lj1g0023135 Lotus japonicus HOM05D005830 ORTHO05D007212 4.5e-79 299.3 395 45.3
Ca_15753_v3 Cicer arietinum L. HOM05D005830 ORTHO05D007212 1.0e-78 298.1 398 46.2
MD15G1128100 Malus domestica HOM05D005830 ORTHO05D007212 1.0e-78 298.1 410 45.1
Lalb_Chr11g0063651 Lupinus albus HOM05D005830 ORTHO05D007212 3.8e-78 296.2 407 45.5
VMungo1309G0557 Vigna mungo HOM05D005830 ORTHO05D007212 1.2e-76 291.2 415 45.5
Oeu056965.1 Olea europaea HOM05D005830 ORTHO05D007212 1.6e-76 290.8 372 45.7
Psat5g029840 Pisum sativum HOM05D005830 ORTHO05D007212 1.6e-76 290.8 407 44.2
RcHm_v2.0_Chr6g0297551 Rosa chinensis HOM05D005830 ORTHO05D007212 1.0e-75 288.1 408 43.6
Migut.K00413 Erythranthe guttata HOM05D005830 ORTHO05D007212 3.0e-75 286.6 406 45.8
Glyma.04G065400 Glycine max HOM05D005830 ORTHO05D007212 4.0e-75 286.2 399 44.9
Actinidia14593 Actinidia chinensis HOM05D000485 ORTHO05D000341 5.2e-75 285.8 319 48.9
FAN15G2262 Fragaria x ananassa HOM05D005830 ORTHO05D007212 2.8e-73 280.0 406 42.6
FAN27G1157 Fragaria x ananassa HOM05D005830 ORTHO05D007212 6.3e-73 278.9 406 41.6
FAN20G1042 Fragaria x ananassa HOM05D005830 ORTHO05D007212 1.1e-72 278.1 406 42.4
AUR62011200 Chenopodium quinoa HOM05D005830 ORTHO05D007212 1.4e-72 277.7 375 44.5
Phvul.009G091500 Phaseolus vulgaris HOM05D005830 ORTHO05D007212 7.0e-72 275.4 403 43.7
Sc06g0000560 Simmondsia chinensis HOM05D005830 ORTHO05D007212 7.0e-72 275.4 395 41.5
FvH4_2g28800 Fragaria vesca HOM05D005830 ORTHO05D007212 9.1e-72 275.0 399 41.9
FAN24G0474 Fragaria x ananassa HOM05D005830 ORTHO05D007212 3.5e-71 273.1 399 41.9
Eucgr.C02754 Eucalyptus grandis HOM05D005830 ORTHO05D007212 4.5e-71 272.7 402 42.3
ECA234G3193 Erigeron canadensis HOM05D005830 ORTHO05D007212 1.3e-70 271.2 296 51.4
SalBow1G4219 Salvia bowleyana HOM05D005830 ORTHO05D007212 1.3e-70 271.2 404 43.3
arahy.Tifrunner.gnm1.ann1.TZG1XT Arachis hypogaea HOM05D000451 ORTHO05D000351 3.8e-70 269.6 330 47.6
Actinidia26367 Actinidia chinensis HOM05D005830 ORTHO05D007212 2.1e-68 263.8 411 43.6
EL10Ac2g04187 Beta vulgaris HOM05D005830 ORTHO05D007212 4.4e-66 256.1 299 46.5
unitig_0.g2712 Utricularia gibba HOM05D005830 ORTHO05D007212 1.7e-65 254.2 411 41.8
Ah.16g104630 Amaranthus hybridus HOM05D000524 ORTHO05D000381 5.9e-63 245.7 295 44.1
FAN26G3009 Fragaria x ananassa HOM05D005830 ORTHO05D007212 1.7e-62 244.2 180 73.3
SEGI_15152 Sequoiadendron giganteum HOM05D005830 ORTHO05D007212 6.4e-57 225.7 463 35.6
HPP92_010549 Vanilla planifolia HOM05D005830 ORTHO05D007212 1.4e-56 224.6 392 38.5
AUR62012424 Chenopodium quinoa HOM05D005830 ORTHO05D007212 3.3e-53 213.4 372 36.8
QL08p064688 Quercus lobata HOM05D005830 ORTHO05D007212 2.1e-44 184.1 145 71.0
AUR62031547 Chenopodium quinoa HOM05D005830 ORTHO05D007212 2.2e-41 174.1 260 39.2
Medtr4g014150 Medicago truncatula HOM05D005830 ORTHO05D007212 1.6e-36 157.9 262 41.6
HPP92_027271 Vanilla planifolia HOM05D005830 ORTHO05D007212 2.4e-32 144.1 186 43.5
Lj7P437T13 Lonicera japonica HOM05D005830 ORTHO05D007212 7.1e-32 142.5 175 51.4
Glyma.16G087650 Glycine max HOM05D005830 ORTHO05D007212 7.3e-29 132.5 188 43.1
Glyma.01G070700 Glycine max HOM05D002723 ORTHO05D003240 1.1e-24 118.6 112 58.0
Glyma.06G066550 Glycine max HOM05D005830 ORTHO05D007212 1.4e-24 118.2 120 54.2
Haze_21491 Corylus avellana HOM05D005830 ORTHO05D007212 4.3e-21 106.7 167 39.5
CANSAT11G0844 Cannabis sativa HOM05D002008 ORTHO05D002054 3.6e-20 103.6 110 54.5
VMungo1309G2190 Vigna mungo HOM05D005830 ORTHO05D026219 2.4e-11 74.3 93 45.2
Glyma.13G162000 Glycine max HOM05D005830 ORTHO05D007212 6.5e-09 66.2 91 47.3


User provided reference genes

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