Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.7G249300 Prunus persica HOM05D005191 ORTHO05D006725 0.0e+00 1467.6 729 100.0
MD15G1165500 Malus domestica HOM05D005191 ORTHO05D006725 0.0e+00 1297.7 742 87.6
MD02G1022800 Malus domestica HOM05D005191 ORTHO05D006725 0.0e+00 1290.8 729 88.1
RcHm_v2.0_Chr2g0087561 Rosa chinensis HOM05D005191 ORTHO05D006725 0.0e+00 1270.8 722 86.4
FvH4_1g02530 Fragaria vesca HOM05D005191 ORTHO05D006725 0.0e+00 1245.7 722 84.2
FAN19G1407 Fragaria x ananassa HOM05D005191 ORTHO05D006725 0.0e+00 1242.6 722 83.9
FAN26G1428 Fragaria x ananassa HOM05D005191 ORTHO05D006725 0.0e+00 1233.8 722 83.4
FAN28G1162 Fragaria x ananassa HOM05D005191 ORTHO05D006725 0.0e+00 1233.4 719 83.6
FAN23G0864 Fragaria x ananassa HOM05D005191 ORTHO05D006725 0.0e+00 1232.6 722 83.2
QL02p090053 Quercus lobata HOM05D005191 ORTHO05D006725 0.0e+00 1214.1 722 82.1
Cfa002299 Carpinus fangiana HOM05D005191 ORTHO05D006725 0.0e+00 1196.0 727 80.6
CiPaw.03G249200 Carya illinoinensis HOM05D005191 ORTHO05D006725 0.0e+00 1188.3 727 79.9
CANSAT11G2540 Cannabis sativa HOM05D005191 ORTHO05D006725 0.0e+00 1171.0 717 79.4
Thecc.09G133700 Theobroma cacao HOM05D005191 ORTHO05D006725 0.0e+00 1167.9 722 79.1
Gorai.004G107900 Gossypium raimondii HOM05D005191 ORTHO05D006725 0.0e+00 1154.4 721 77.9
Ciclev10007583m.g Citrus clementina HOM05D005191 ORTHO05D006725 0.0e+00 1147.1 727 77.0
COL.COLO4_15579 Corchorus olitorius HOM05D005191 ORTHO05D006725 0.0e+00 1146.0 722 77.8
Gohir.A08G088900 Gossypium hirsutum HOM05D005191 ORTHO05D006725 0.0e+00 1139.8 721 77.4
Potri.006G065000 Populus trichocarpa HOM05D005191 ORTHO05D006725 0.0e+00 1125.2 707 77.2
TWI63G0111 Tripterygium wilfordii HOM05D005191 ORTHO05D006725 0.0e+00 1113.6 723 75.2
CSS0021683 Camellia sinensis var. sinensis HOM05D005191 ORTHO05D006725 0.0e+00 1109.4 735 75.1
TAR625G1134 Trochodendron aralioides HOM05D005191 ORTHO05D006725 0.0e+00 1107.0 723 75.9
Sed0022210 Sechium edule HOM05D005191 ORTHO05D006725 0.0e+00 1103.6 709 74.3
Potri.T124807 Populus trichocarpa HOM05D005191 ORTHO05D006725 0.0e+00 1102.0 728 74.2
Potri.018G125171 Populus trichocarpa HOM05D005191 ORTHO05D006725 0.0e+00 1100.9 728 74.2
CsaV3_1G027890 Cucumis sativus L. HOM05D005191 ORTHO05D006725 0.0e+00 1092.0 728 72.8
TWI32G0152 Tripterygium wilfordii HOM05D005191 ORTHO05D006725 0.0e+00 1087.0 719 73.2
Eucgr.E03534 Eucalyptus grandis HOM05D005191 ORTHO05D006725 0.0e+00 1086.6 723 74.1
Glyma.17G110600 Glycine max HOM05D005191 ORTHO05D006725 0.0e+00 1086.6 716 75.7
Gohir.D08G100100 Gossypium hirsutum HOM05D005191 ORTHO05D006725 0.0e+00 1085.5 680 77.6
Glyma.13G160800 Glycine max HOM05D005191 ORTHO05D006725 1.5e-311 1072.4 717 74.5
Nn2g12129 Nelumbo nucifera HOM05D005191 ORTHO05D006725 1.3e-310 1069.3 717 73.5
Cpa.g.sc46.51 Carica papaya HOM05D005191 ORTHO05D006725 1.1e-309 1066.2 727 71.5
Lj7A435G51 Lonicera japonica HOM05D005191 ORTHO05D006725 3.2e-309 1064.7 722 72.7
Sabra18G0106500 Salix brachista HOM05D005191 ORTHO05D006725 1.6e-308 1062.4 750 70.3
Phvul.003G169500 Phaseolus vulgaris HOM05D005191 ORTHO05D006725 6.0e-308 1060.4 713 74.1
Lalb_Chr12g0198261 Lupinus albus HOM05D005191 ORTHO05D006725 7.9e-308 1060.1 724 73.2
arahy.Tifrunner.gnm1.ann1.0L2UMW Arachis hypogaea HOM05D005191 ORTHO05D006725 1.0e-307 1059.7 727 71.5
ClCG06G011590 Citrullus lanatus HOM05D005191 ORTHO05D006725 3.0e-307 1058.1 780 67.6
Cc06_g08000 Coffea canephora HOM05D005191 ORTHO05D006725 1.9e-306 1055.4 717 72.2
Cc06_g08010 Coffea canephora HOM05D005191 ORTHO05D006725 1.9e-306 1055.4 717 72.2
arahy.Tifrunner.gnm1.ann1.W0WM15 Arachis hypogaea HOM05D005191 ORTHO05D006725 9.6e-306 1053.1 727 71.1
THA.LOC104826555 Tarenaya hassleriana HOM05D005191 ORTHO05D006725 1.3e-305 1052.7 708 70.9
VMungo1215G2132 Vigna mungo HOM05D005191 ORTHO05D006725 1.1e-304 1049.7 713 73.2
Aqoxy7G02403 Aquilegia oxysepala HOM05D005191 ORTHO05D006725 2.6e-303 1045.0 706 72.8
Manes.06G046300 Manihot esculenta HOM05D005191 ORTHO05D006725 9.9e-303 1043.1 723 70.3
ECA236G3625 Erigeron canadensis HOM05D005191 ORTHO05D006725 1.4e-301 1039.3 707 71.3
Duzib150G0407 Durio zibethinus HOM05D005191 ORTHO05D006725 3.2e-301 1038.1 728 72.5
CAN.G1663.1 Capsicum annuum HOM05D005191 ORTHO05D006725 3.9e-299 1031.2 716 69.4
Sopen07g001100 Solanum pennellii HOM05D005191 ORTHO05D006725 1.1e-298 1029.6 721 69.2
Rhsim03G0251800 Rhododendron simsii HOM05D005191 ORTHO05D006725 3.7e-297 1024.6 710 72.7
Sc18g0000280 Simmondsia chinensis HOM05D005191 ORTHO05D006725 4.8e-297 1024.2 713 70.4
Psat4g036440 Pisum sativum HOM05D005191 ORTHO05D006725 4.0e-296 1021.1 714 70.7
MSTRG.26350 Avicennia marina HOM05D005191 ORTHO05D006725 2.0e-295 1018.8 728 68.8
Lj4g0015768 Lotus japonicus HOM05D005191 ORTHO05D006725 2.0e-295 1018.8 718 70.8
Nitab4.5_0000374g0090 Nicotiana tabacum HOM05D005191 ORTHO05D006725 4.5e-295 1017.7 687 71.5
PSO170G6846 Papaver somniferum HOM05D005191 ORTHO05D006725 1.0e-294 1016.5 717 69.9
PSO017G2350 Papaver somniferum HOM05D005191 ORTHO05D006725 1.7e-294 1015.8 701 70.9
Migut.K00420 Erythranthe guttata HOM05D005191 ORTHO05D006725 1.1e-293 1013.1 729 67.1
Lsat_1_v5_gn_8_61061 Lactuca sativa HOM05D005191 ORTHO05D006725 3.2e-293 1011.5 713 69.1
HanXRQChr05g0143851 Helianthus annuus HOM05D005191 ORTHO05D006725 3.0e-291 1005.0 708 70.2
SGA_v2.0_scaffold63G21813 Striga asiatica HOM05D005191 ORTHO05D006725 6.7e-291 1003.8 729 67.8
Peaxi162Scf00088g01225 Petunia axillaris HOM05D005191 ORTHO05D006725 2.2e-289 998.8 711 68.5
TPR.G7618 Trifolium pratense HOM05D005191 ORTHO05D006725 4.8e-289 997.7 692 71.5
AUR62013300 Chenopodium quinoa HOM05D005191 ORTHO05D006725 1.8e-288 995.7 713 68.6
Solyc07g007810.3 Solanum lycopersicum HOM05D005191 ORTHO05D006725 2.6e-287 991.9 721 67.7
Dinv41468 Davidia involucrata HOM05D005191 ORTHO05D006725 1.3e-278 963.0 589 81.3
PGR142G3543 Punica granatum HOM05D005191 ORTHO05D006725 7.2e-277 957.2 709 68.8
EL10Ac8g18733 Beta vulgaris HOM05D005191 ORTHO05D006725 5.7e-274 947.6 822 59.4
Aa31LG8G12200 Aethionema arabicum HOM05D005191 ORTHO05D006725 3.5e-271 938.3 708 66.0
Hund26552 Selenicereus undatus HOM05D005191 ORTHO05D006725 4.5e-271 937.9 723 65.3
Sp3g26260 Schrenkiella parvula HOM05D005191 ORTHO05D006725 1.4e-264 916.4 713 63.4
DCAR_009327 Daucus carota HOM05D005191 ORTHO05D006725 1.8e-264 916.0 719 65.9
AUR62011184 Chenopodium quinoa HOM05D005191 ORTHO05D006725 7.7e-263 910.6 725 63.9
Atru.chr7.1956 Acer truncatum HOM05D005191 ORTHO05D006725 1.0e-262 910.2 555 78.6
A06p26710 Brassica napus HOM05D005191 ORTHO05D006725 1.7e-262 909.4 713 63.1
Actinidia26371 Actinidia chinensis HOM05D005191 ORTHO05D006725 5.5e-261 904.4 713 65.5
BcaC01g02222 Brassica carinata HOM05D005191 ORTHO05D006725 2.0e-258 896.0 713 62.4
C03p67700 Brassica napus HOM05D005191 ORTHO05D006725 2.0e-258 896.0 713 62.4
Nitab4.5_0005159g0010 Nicotiana tabacum HOM05D005191 ORTHO05D006725 3.4e-258 895.2 613 70.1
AL3G44790 Arabidopsis lyrata HOM05D005191 ORTHO05D006725 1.1e-256 890.2 710 62.4
BcaB02g10775 Brassica carinata HOM05D005191 ORTHO05D006725 1.4e-256 889.8 713 62.4
BolSC21t60229H Brassica oleracea HOM05D005191 ORTHO05D006725 2.4e-256 889.0 719 61.8
Carub.0003s2755 Capsella rubella HOM05D005191 ORTHO05D006725 3.1e-256 888.6 710 62.1
Medtr4g115450 Medicago truncatula HOM05D005191 ORTHO05D006725 4.1e-256 888.3 629 70.3
AT2G11000 Arabidopsis thaliana HOM05D005191 ORTHO05D006725 1.6e-255 886.3 711 62.3
ATR0800G098 Amborella trichopoda HOM05D005191 ORTHO05D006725 2.6e-250 869.0 659 66.6
MELO3C010304.2 Cucumis melo HOM05D005191 ORTHO05D006725 2.7e-247 859.0 748 59.9
BraA06t25606Z Brassica rapa HOM05D005191 ORTHO05D006725 1.0e-246 857.1 728 59.8
Thhalv10022576m.g Eutrema salsugineum HOM05D005191 ORTHO05D006725 1.5e-213 746.9 607 61.6
GSVIVG01015604001 Vitis vinifera HOM05D005191 ORTHO05D006725 4.4e-210 735.3 470 77.2
SalBow1G1849 Salvia bowleyana HOM05D005191 ORTHO05D006725 6.4e-209 731.5 620 58.5
SEGI_14008 Sequoiadendron giganteum HOM05D005191 ORTHO05D006725 7.8e-207 724.5 718 54.0
vmacro06157 Vaccinium macrocarpon HOM05D005191 ORTHO05D006725 1.6e-196 690.3 451 75.2
Ah.14g079340 Amaranthus hybridus HOM05D005191 ORTHO05D006725 2.9e-185 652.9 467 66.0
CARHR104890 Cardamine hirsuta HOM05D005191 ORTHO05D006725 1.0e-182 644.4 452 69.7
Oeu052176.1 Olea europaea HOM05D005191 ORTHO05D006725 4.3e-181 639.0 471 66.0
HPP92_010843 Vanilla planifolia HOM05D005191 ORTHO05D006725 2.9e-177 626.3 459 66.7
Haze_25489 Corylus avellana HOM05D005191 ORTHO05D006725 3.8e-177 625.9 453 71.7
Mapoly0005s0239 Marchantia polymorpha HOM05D005191 ORTHO05D006725 5.5e-176 622.1 734 46.5
Pp3c26_8550 Physcomitrium patens HOM05D005191 ORTHO05D006725 4.3e-173 612.5 734 45.8
Hund26401 Selenicereus undatus HOM05D005191 ORTHO05D006725 6.7e-166 588.6 478 61.9
Ca_21665_v3 Cicer arietinum L. HOM05D005191 ORTHO05D006725 1.9e-160 570.5 392 73.0
Zm00001eb192130 Zea mays HOM05D005191 ORTHO05D006725 1.6e-151 540.8 433 62.4
AagrBONN_evm.TU.Sc2ySwM_344.2372 Anthoceros agrestis HOM05D005191 ORTHO05D006725 4.7e-151 539.3 686 43.6
Haze_25491 Corylus avellana HOM05D005191 ORTHO05D006725 1.7e-148 530.8 379 70.4
Os02g0803250 Oryza sativa ssp. japonica HOM05D005191 ORTHO05D006725 1.7e-140 504.2 682 43.3
unitig_0.g2715 Utricularia gibba HOM05D005191 ORTHO05D006725 6.3e-140 502.3 421 61.5
CBR_g29413 Chara braunii HOM05D005191 ORTHO05D006725 1.2e-135 488.0 776 38.5
SMO174G0034 Selaginella moellendorffii HOM05D005191 ORTHO05D006725 5.7e-133 479.2 734 39.4
Sabra06G0047500 Salix brachista HOM05D005191 ORTHO05D006725 8.0e-127 458.8 306 72.2
Ca_06948_v3 Cicer arietinum L. HOM05D005191 ORTHO05D006725 4.7e-119 433.0 325 65.8
CDE05G1862 Ceratophyllum demersum HOM05D005191 ORTHO05D006725 1.0e-118 431.8 372 62.6
Actinidia38723 Actinidia chinensis HOM05D005191 ORTHO05D006725 6.4e-116 422.5 293 72.0
GSVIVG01002648001 Vitis vinifera HOM05D005191 ORTHO05D006725 2.6e-93 347.4 184 89.7
Psat6g224720 Pisum sativum HOM05D005191 ORTHO05D006725 3.3e-80 303.9 202 71.8
vmacro06156 Vaccinium macrocarpon HOM05D005191 ORTHO05D006725 4.3e-72 276.9 243 59.3
FAN06G0842 Fragaria x ananassa HOM05D005191 ORTHO05D006725 5.3e-70 270.0 315 51.1
Rhsim13G0106800 Rhododendron simsii HOM05D005191 ORTHO05D006725 4.1e-46 190.7 143 69.2
CDE05G1976 Ceratophyllum demersum HOM05D005191 ORTHO05D006725 7.9e-42 176.4 157 55.4
FAN06G5005 Fragaria x ananassa HOM05D005191 ORTHO05D006725 1.5e-40 172.2 267 43.8
TPR.G8947 Trifolium pratense HOM05D005191 ORTHO05D006725 1.5e-40 172.2 99 82.8
Actinidia38722 Actinidia chinensis HOM05D005191 ORTHO05D006725 3.3e-40 171.0 161 55.3
unitig_0.g2716 Utricularia gibba HOM05D005191 ORTHO05D006725 2.8e-39 167.9 148 57.4
Nitab4.5_0005159g0020 Nicotiana tabacum HOM05D005191 ORTHO05D006725 1.8e-38 165.2 116 69.8
FvH4_7g23890 Fragaria vesca HOM05D005191 ORTHO05D006725 2.2e-36 158.3 151 56.3
RcHm_v2.0_Chr5g0051701 Rosa chinensis HOM05D005191 ORTHO05D006725 5.0e-36 157.1 132 64.4
FAN10G4062 Fragaria x ananassa HOM05D005191 ORTHO05D006725 5.5e-35 153.7 123 68.3
FAN10G2766 Fragaria x ananassa HOM05D005191 ORTHO05D006725 6.3e-31 140.2 83 83.1
PRCOL_00001705 Prasinoderma coloniale HOM05D005191 ORTHO05D006725 8.2e-31 139.8 544 27.0
FAN26G2291 Fragaria x ananassa HOM05D005191 ORTHO05D006725 4.5e-29 134.0 84 79.8
Cre06.g300650 Chlamydomonas reinhardtii HOM05D005191 ORTHO05D006725 1.9e-27 128.6 806 23.6
FAN15G1193 Fragaria x ananassa HOM05D002169 ORTHO05D006927 2.1e-26 125.2 75 82.7
MBI13_g29624_MAGBIO Magnolia biondii HOM05D005191 ORTHO05D006725 1.5e-19 102.4 63 74.6
Rhsim05G0138400 Rhododendron simsii HOM05D005191 ORTHO05D006725 4.7e-18 97.4 116 53.4
FvH4_1g29180 Fragaria vesca HOM05D005191 ORTHO05D025363 4.4e-16 90.9 48 89.6
COL.COLO4_23752 Corchorus olitorius HOM05D005191 ORTHO05D016248 9.8e-16 89.7 61 67.2
COL.COLO4_21409 Corchorus olitorius HOM05D005191 ORTHO05D016248 4.1e-14 84.3 56 69.6
Rhsim10G0150400 Rhododendron simsii HOM05D005191 ORTHO05D030537 5.9e-13 80.5 51 72.5
GSVIVG01012804001 Vitis vinifera HOM05D005191 ORTHO05D006725 4.3e-11 74.3 66 56.1
Sp3g26280 Schrenkiella parvula HOM05D005191 ORTHO05D012938 1.6e-10 72.4 51 66.7
Thhalv10022959m.g Eutrema salsugineum HOM05D005191 ORTHO05D006725 1.4e-09 69.3 96 41.7
FAN06G4723 Fragaria x ananassa HOM05D005191 ORTHO05D006725 1.3e-07 62.8 37 75.7
COL.COLO4_37048 Corchorus olitorius HOM05D005191 ORTHO05D006725 4.9e-07 60.8 40 67.5
COL.COLO4_06980 Corchorus olitorius HOM05D005191 ORTHO05D006725 4.1e-06 57.8 40 65.0


User provided reference genes

Program Settings