Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.7G248700 Prunus persica HOM05D007419 ORTHO05D009327 0.0e+00 2104.7 1059 100.0
MD15G1166600 Malus domestica HOM05D007419 ORTHO05D009327 0.0e+00 1589.7 1145 72.5
RcHm_v2.0_Chr2g0087621 Rosa chinensis HOM05D007419 ORTHO05D009327 0.0e+00 1476.1 1144 67.0
FvH4_1g02590 Fragaria vesca HOM05D007419 ORTHO05D009327 0.0e+00 1417.1 1149 64.7
FAN19G0754 Fragaria x ananassa HOM05D007419 ORTHO05D009327 0.0e+00 1417.1 1149 64.8
FAN26G2390 Fragaria x ananassa HOM05D007419 ORTHO05D009327 0.0e+00 1398.6 1149 64.1
FAN28G1883 Fragaria x ananassa HOM05D007419 ORTHO05D009327 0.0e+00 1396.3 1149 63.9
Cfa003423 Carpinus fangiana HOM05D007419 ORTHO05D009327 0.0e+00 1204.5 1145 57.8
QL09p047694 Quercus lobata HOM05D007419 ORTHO05D009327 0.0e+00 1168.7 1146 55.5
Haze_25509 Corylus avellana HOM05D007419 ORTHO05D009327 0.0e+00 1152.5 1231 53.4
TAR636G1395 Trochodendron aralioides HOM05D007419 ORTHO05D009327 0.0e+00 1115.5 1153 53.4
CANSAT11G1590 Cannabis sativa HOM05D007419 ORTHO05D009327 0.0e+00 1112.8 1152 53.0
COL.COLO4_35160 Corchorus olitorius HOM05D007419 ORTHO05D009327 6.5e-311 1070.8 1147 51.7
Thecc.09G132300 Theobroma cacao HOM05D007419 ORTHO05D009327 2.3e-308 1062.4 1144 52.9
Gorai.013G235200 Gossypium raimondii HOM05D007419 ORTHO05D009327 4.5e-296 1021.5 1141 50.7
Potri.018G126300 Populus trichocarpa HOM05D007419 ORTHO05D009327 8.5e-295 1017.3 1147 51.2
Glyma.17G111300 Glycine max HOM05D007419 ORTHO05D009327 1.5e-286 989.9 1144 49.0
Medtr4g115340 Medicago truncatula HOM05D007419 ORTHO05D009327 1.2e-285 986.9 1140 48.7
Sabra18G0107200 Salix brachista HOM05D007419 ORTHO05D009327 2.3e-284 982.6 1148 49.9
arahy.Tifrunner.gnm1.ann1.XRJX6H Arachis hypogaea HOM05D007419 ORTHO05D009327 5.2e-284 981.5 1151 48.5
TPR.G24826 Trifolium pratense HOM05D007419 ORTHO05D009327 2.0e-283 979.5 1142 48.6
Phvul.003G168900 Phaseolus vulgaris HOM05D007419 ORTHO05D009327 2.8e-282 975.7 1140 48.1
Dinv41474 Davidia involucrata HOM05D003622 ORTHO05D004453 1.4e-281 973.4 1061 53.4
Lj7A626G73 Lonicera japonica HOM05D007419 ORTHO05D009327 1.2e-277 960.3 1203 47.4
VMungo1215G0197 Vigna mungo HOM05D007419 ORTHO05D009327 6.1e-277 958.0 1146 48.3
Lj4g0016099 Lotus japonicus HOM05D007419 ORTHO05D009327 4.0e-276 955.3 1139 48.1
Ca_06942_v3 Cicer arietinum L. HOM05D007419 ORTHO05D009327 1.5e-275 953.4 1142 48.3
arahy.Tifrunner.gnm1.ann1.SLI0XQ Arachis hypogaea HOM05D007419 ORTHO05D009327 2.2e-274 949.5 1146 47.4
Sed0020697 Sechium edule HOM05D007419 ORTHO05D009327 8.3e-274 947.6 1144 48.2
Lalb_Chr13g0301571 Lupinus albus HOM05D007419 ORTHO05D009327 7.0e-273 944.5 1159 47.4
ClCG06G011500 Citrullus lanatus HOM05D007419 ORTHO05D009327 1.6e-272 943.3 1179 47.1
Atru.chr7.1950 Acer truncatum HOM05D007419 ORTHO05D009327 2.7e-272 942.6 977 53.3
Rhsim01G0061500 Rhododendron simsii HOM05D007419 ORTHO05D009327 1.1e-270 937.2 1249 45.9
CsaV3_1G026730 Cucumis sativus L. HOM05D007419 ORTHO05D009327 1.7e-263 913.3 1095 48.0
MELO3C029461.2 Cucumis melo HOM05D007419 ORTHO05D009327 3.4e-259 899.0 1144 45.5
DCAR_014901 Daucus carota HOM05D007419 ORTHO05D009327 8.3e-258 894.4 1168 45.1
FAN23G1807 Fragaria x ananassa HOM05D007419 ORTHO05D009327 9.2e-257 891.0 1063 50.7
Gohir.A13G200700 Gossypium hirsutum HOM05D007419 ORTHO05D009327 5.6e-254 881.7 1030 48.5
Duzib168G0167 Durio zibethinus HOM05D007419 ORTHO05D009327 3.5e-248 862.4 1058 48.5
Aqoxy7G03635 Aquilegia oxysepala HOM05D007419 ORTHO05D009327 6.0e-248 861.7 1093 47.0
PGSC0003DMG400030908 Solanum tuberosum HOM05D007419 ORTHO05D009327 6.0e-240 835.1 1148 43.8
Peaxi162Scf00088g01333 Petunia axillaris HOM05D007419 ORTHO05D009327 7.8e-240 834.7 1144 43.6
Cc06_g08060 Coffea canephora HOM05D007419 ORTHO05D009327 2.8e-237 826.2 1155 43.0
AUR62013308 Chenopodium quinoa HOM05D007419 ORTHO05D009327 1.1e-236 824.3 1159 43.5
Sopen07g003800 Solanum pennellii HOM05D007419 ORTHO05D009327 1.8e-236 823.5 1148 43.5
HanXRQChr12g0356641 Helianthus annuus HOM05D007419 ORTHO05D009327 2.4e-233 813.1 1128 43.8
Solyc07g007920.3 Solanum lycopersicum HOM05D007419 ORTHO05D009327 4.1e-233 812.4 1146 43.0
GSVIVG01015591001 Vitis vinifera HOM05D007419 ORTHO05D009327 3.5e-232 809.3 860 52.6
Nitab4.5_0003393g0060 Nicotiana tabacum HOM05D007419 ORTHO05D009327 2.3e-231 806.6 1146 42.1
Ah.09g224820 Amaranthus hybridus HOM05D007419 ORTHO05D009327 3.4e-227 792.7 1151 42.5
ECA234G0484 Erigeron canadensis HOM05D007419 ORTHO05D009327 4.4e-227 792.3 1119 43.1
Migut.K00424 Erythranthe guttata HOM05D007419 ORTHO05D009327 3.9e-223 779.2 1125 41.9
vmacro07721 Vaccinium macrocarpon HOM05D007419 ORTHO05D009327 2.5e-222 776.5 1014 45.3
Lsat_1_v5_gn_5_91781 Lactuca sativa HOM05D007419 ORTHO05D009327 7.9e-216 755.0 1138 41.6
QL09p047847 Quercus lobata HOM05D007419 ORTHO05D009327 5.8e-211 738.8 1061 44.2
SalBow1G7934 Salvia bowleyana HOM05D007419 ORTHO05D009327 1.7e-210 737.3 1186 39.6
SGA_v2.0_scaffold109G31074 Striga asiatica HOM05D007419 ORTHO05D009327 1.4e-209 734.2 1137 40.5
Manes.06G047100 Manihot esculenta HOM05D007419 ORTHO05D009327 3.0e-207 726.5 813 49.9
Nitab4.5_0002008g0040 Nicotiana tabacum HOM05D007419 ORTHO05D009327 5.5e-201 705.7 1146 38.6
TWI34G0413 Tripterygium wilfordii HOM05D007419 ORTHO05D009327 2.1e-200 703.7 950 45.3
Glyma.13G160200 Glycine max HOM05D007419 ORTHO05D009327 3.5e-200 703.0 1045 43.3
CAN.G1315.3 Capsicum annuum HOM05D007419 ORTHO05D009327 1.3e-194 684.5 1023 41.2
QL09p047989 Quercus lobata HOM05D007419 ORTHO05D009327 2.3e-183 647.1 942 41.4
Actinidia21952 Actinidia chinensis HOM05D007419 ORTHO05D009327 1.5e-182 644.4 854 45.4
Psat4g039120 Pisum sativum HOM05D007419 ORTHO05D009327 8.5e-178 628.6 707 48.7
Sc08g0006270 Simmondsia chinensis HOM05D007419 ORTHO05D009327 5.2e-175 619.4 879 42.0
ATR0800G079 Amborella trichopoda HOM05D007419 ORTHO05D009327 6.3e-173 612.5 1031 39.1
Nn8g39549 Nelumbo nucifera HOM05D007419 ORTHO05D009327 3.1e-172 610.1 861 43.2
Gohir.D13G206200 Gossypium hirsutum HOM05D007419 ORTHO05D009327 2.7e-163 580.5 697 46.8
Eucgr.C01385 Eucalyptus grandis HOM05D007419 ORTHO05D009327 7.7e-163 578.9 856 41.8
SEGI_05905 Sequoiadendron giganteum HOM05D007419 ORTHO05D009327 5.0e-146 523.1 1093 32.8
MD15G1167400 Malus domestica HOM05D007419 ORTHO05D009327 1.9e-137 494.6 302 83.1
SEGI_33879 Sequoiadendron giganteum HOM05D007419 ORTHO05D009327 2.5e-137 494.2 1226 30.2
Os06g0173000 Oryza sativa ssp. japonica HOM05D007419 ORTHO05D009327 1.8e-119 434.9 1149 29.9
MBI15_g15110_MAGBIO Magnolia biondii HOM05D007419 ORTHO05D009327 1.5e-118 431.8 872 35.8
Hund26535 Selenicereus undatus HOM05D007419 ORTHO05D009327 4.2e-116 423.7 415 56.4
AUR62011176 Chenopodium quinoa HOM05D007419 ORTHO05D009327 1.7e-93 348.6 314 59.9
GSVIVG01015592001 Vitis vinifera HOM05D007419 ORTHO05D009327 9.6e-89 332.8 275 63.6
Gohir.D13G206300 Gossypium hirsutum HOM05D007419 ORTHO05D009327 4.5e-78 297.4 274 56.9
Psat4g039080 Pisum sativum HOM05D007419 ORTHO05D009327 2.3e-74 285.0 328 50.0
SMO340G0190 Selaginella moellendorffii HOM05D007419 ORTHO05D009327 7.7e-70 270.0 1066 26.3
Zm00001eb375320 Zea mays HOM05D007419 ORTHO05D009327 1.4e-68 265.8 862 26.6
CSS0048092 Camellia sinensis var. sinensis HOM05D007419 ORTHO05D009327 2.5e-68 265.0 229 61.6
TWI34G1676 Tripterygium wilfordii HOM05D007419 ORTHO05D009327 2.7e-67 261.5 218 64.7
CAN.G778.5 Capsicum annuum HOM05D007419 ORTHO05D009327 3.6e-67 261.2 203 61.6
Actinidia21951 Actinidia chinensis HOM05D007419 ORTHO05D009327 3.1e-63 248.1 267 54.7
QL09p046570 Quercus lobata HOM05D007419 ORTHO05D009327 1.5e-62 245.7 344 42.4
QL09p046495 Quercus lobata HOM05D007419 ORTHO05D009327 1.1e-57 229.6 340 42.6
SEGI_04675 Sequoiadendron giganteum HOM05D007419 ORTHO05D009327 3.2e-52 211.5 430 32.1
QL09p046488 Quercus lobata HOM05D007419 ORTHO05D009327 1.3e-48 199.5 160 68.8
QL09p046563 Quercus lobata HOM05D007419 ORTHO05D009327 1.3e-48 199.5 160 68.8
Eucgr.C01386 Eucalyptus grandis HOM05D007419 ORTHO05D009327 1.8e-39 169.1 163 56.4
EL10Ac8g18720 Beta vulgaris HOM05D007419 ORTHO05D009327 9.1e-39 166.8 156 59.0
Oeu012224.2 Olea europaea HOM05D007419 ORTHO05D009327 2.7e-38 165.2 352 35.5
Oeu038257.1 Olea europaea HOM05D007419 ORTHO05D009327 2.8e-35 155.2 222 44.1
CBR_g6680 Chara braunii HOM05D007419 ORTHO05D009327 3.0e-34 151.8 250 34.0
MD08G1122800 Malus domestica HOM05D007419 ORTHO05D009327 1.5e-33 149.4 85 87.1
MSTRG.26436 Avicennia marina HOM05D007419 ORTHO05D009327 5.9e-30 137.5 167 45.5
Dinv10908 Davidia involucrata HOM05D007419 ORTHO05D009327 1.0e-29 136.7 116 61.2
Nn8g39545 Nelumbo nucifera HOM05D007419 ORTHO05D009327 1.3e-16 93.2 92 54.3
SEGI_28656 Sequoiadendron giganteum HOM05D007419 ORTHO05D009327 7.8e-14 84.0 161 29.8
Medtr7g110110 Medicago truncatula HOM05D007419 ORTHO05D009327 2.9e-08 65.5 99 38.4
FAN19G1054 Fragaria x ananassa HOM05D058803 ORTHO05D045847 7.1e-07 60.8 49 65.3
FvH4_1g06080 Fragaria vesca HOM05D058803 ORTHO05D045847 7.8e-06 57.4 49 63.3


User provided reference genes

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