Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.7G244000 Prunus persica HOM05D005333 ORTHO05D005776 1.5e-53 212.6 107 100.0
Prupe.7G066500 Prunus persica HOM05D005333 ORTHO05D005776 4.7e-52 207.6 107 97.2
MD15G1172100 Malus domestica HOM05D005333 ORTHO05D005776 2.0e-42 175.6 101 84.2
MD02G1030500 Malus domestica HOM05D005333 ORTHO05D005776 7.1e-40 167.2 107 81.3
RcHm_v2.0_Chr2g0088271 Rosa chinensis HOM05D005333 ORTHO05D005776 3.1e-35 151.8 108 74.1
Cfa003386 Carpinus fangiana HOM05D005333 ORTHO05D005776 4.9e-33 144.4 104 70.2
GSVIVG01015545001 Vitis vinifera HOM05D005333 ORTHO05D005776 9.3e-32 140.2 107 67.3
QL02p088661 Quercus lobata HOM05D005333 ORTHO05D005776 2.1e-31 139.0 104 70.2
CiPaw.03G244900 Carya illinoinensis HOM05D005333 ORTHO05D005776 2.7e-31 138.7 107 68.2
Dinv36517 Davidia involucrata HOM05D005333 ORTHO05D005776 3.5e-31 138.3 104 67.3
Rhsim03G0248400 Rhododendron simsii HOM05D005333 ORTHO05D005776 4.6e-31 137.9 107 70.1
TWI34G1084 Tripterygium wilfordii HOM05D005333 ORTHO05D005776 6.0e-31 137.5 107 68.2
Manes.14G133000 Manihot esculenta HOM05D005333 ORTHO05D005776 1.3e-30 136.3 104 67.3
Haze_25566 Corylus avellana HOM05D005333 ORTHO05D005776 1.7e-30 136.0 98 69.4
Atru.chr1.953 Acer truncatum HOM05D005333 ORTHO05D005776 3.9e-30 134.8 108 64.8
CANSAT11G0814 Cannabis sativa HOM05D005333 ORTHO05D005776 3.9e-30 134.8 107 67.3
Hma1.2p1_0018F.1_g012330 Hydrangea macrophylla HOM05D005333 ORTHO05D005776 3.9e-30 134.8 104 65.4
Dinv41504 Davidia involucrata HOM05D005333 ORTHO05D005776 5.1e-30 134.4 94 73.4
ClCG06G011210 Citrullus lanatus HOM05D005333 ORTHO05D005776 8.7e-30 133.7 104 64.4
FvH4_1g03150 Fragaria vesca HOM05D005333 ORTHO05D005776 8.7e-30 133.7 105 68.6
FAN19G1630 Fragaria x ananassa HOM05D005333 ORTHO05D005776 8.7e-30 133.7 105 68.6
Cpa.g.sc46.7 Carica papaya HOM05D005333 ORTHO05D005776 1.1e-29 133.3 104 66.3
Duzib187G1708 Durio zibethinus HOM05D005333 ORTHO05D005776 1.9e-29 132.5 107 62.6
Ciclev10010005m.g Citrus clementina HOM05D005333 ORTHO05D005776 2.5e-29 132.1 107 64.5
vmacro20565 Vaccinium macrocarpon HOM05D005333 ORTHO05D005776 5.6e-29 131.0 101 66.3
FAN26G1318 Fragaria x ananassa HOM05D005333 ORTHO05D005776 7.3e-29 130.6 104 66.3
Gohir.A06G055500 Gossypium hirsutum HOM05D005333 ORTHO05D005776 7.3e-29 130.6 107 63.6
Gorai.010G063500 Gossypium raimondii HOM05D005333 ORTHO05D005776 7.3e-29 130.6 107 63.6
Thecc.09G127500 Theobroma cacao HOM05D005333 ORTHO05D005776 1.3e-28 129.8 107 61.7
FAN23G1698 Fragaria x ananassa HOM05D005333 ORTHO05D005776 1.6e-28 129.4 128 56.2
DCAR_014887 Daucus carota HOM05D005333 ORTHO05D005776 2.1e-28 129.0 106 66.0
FAN28G2446 Fragaria x ananassa HOM05D000315 ORTHO05D001379 2.1e-28 129.0 104 66.3
Gohir.D06G054400 Gossypium hirsutum HOM05D005333 ORTHO05D005776 2.1e-28 129.0 107 63.6
CsaV3_1G030220 Cucumis sativus L. HOM05D005333 ORTHO05D005776 3.6e-28 128.3 104 60.6
Cc06_g08400 Coffea canephora HOM05D005333 ORTHO05D005776 4.8e-28 127.9 105 65.7
Nn2g12046 Nelumbo nucifera HOM05D005333 ORTHO05D005776 1.4e-27 126.3 101 65.3
Actinidia40477 Actinidia chinensis HOM05D001011 ORTHO05D000851 2.4e-27 125.6 83 73.5
Lalb_Chr12g0197971 Lupinus albus HOM05D005333 ORTHO05D005776 3.1e-27 125.2 102 66.7
AT5G20180 Arabidopsis thaliana HOM05D005333 ORTHO05D005776 1.5e-26 122.9 110 60.9
DCAR_020918 Daucus carota HOM05D005333 ORTHO05D005776 2.0e-26 122.5 107 62.6
Potri.018G131000 Populus trichocarpa HOM05D005333 ORTHO05D005776 2.0e-26 122.5 107 58.9
Duzib168G0900 Durio zibethinus HOM05D005333 ORTHO05D005776 3.4e-26 121.7 107 60.7
Nitab4.5_0000028g0370 Nicotiana tabacum HOM05D005333 ORTHO05D005776 3.4e-26 121.7 107 58.9
Hund09250 Selenicereus undatus HOM05D005333 ORTHO05D005776 3.4e-26 121.7 104 58.7
arahy.Tifrunner.gnm1.ann1.83L7WY Arachis hypogaea HOM05D005333 ORTHO05D005776 4.5e-26 121.3 103 62.1
arahy.Tifrunner.gnm1.ann1.U3NP9C Arachis hypogaea HOM05D005333 ORTHO05D005776 7.6e-26 120.6 103 61.2
AL6G31740 Arabidopsis lyrata HOM05D005333 ORTHO05D005776 9.9e-26 120.2 110 58.2
Lj4g0022056 Lotus japonicus HOM05D005333 ORTHO05D005776 1.7e-25 119.4 105 61.0
Medtr4g114610 Medicago truncatula HOM05D005333 ORTHO05D005776 2.2e-25 119.0 104 59.6
Potri.006G069000 Populus trichocarpa HOM05D005333 ORTHO05D005776 2.9e-25 118.6 107 58.9
Carub.0006s1858 Capsella rubella HOM05D005333 ORTHO05D005776 3.8e-25 118.2 110 56.4
Eucgr.C01530 Eucalyptus grandis HOM05D005333 ORTHO05D005776 4.9e-25 117.9 102 60.8
Nitab4.5_0006661g0010 Nicotiana tabacum HOM05D005333 ORTHO05D005776 6.4e-25 117.5 107 57.0
AUR62013349 Chenopodium quinoa HOM05D005333 ORTHO05D005776 8.4e-25 117.1 107 57.0
MSTRG.12252 Avicennia marina HOM05D005333 ORTHO05D005776 1.1e-24 116.7 104 59.6
EL10Ac8g18671 Beta vulgaris HOM05D005333 ORTHO05D005776 1.1e-24 116.7 107 55.1
Sc08g0006540 Simmondsia chinensis HOM05D005333 ORTHO05D005776 1.1e-24 116.7 104 57.7
Eucgr.C01196 Eucalyptus grandis HOM05D005333 ORTHO05D005776 1.9e-24 115.9 104 60.6
THA.LOC104799642 Tarenaya hassleriana HOM05D005333 ORTHO05D005776 2.4e-24 115.5 109 55.0
Psat4g038680 Pisum sativum HOM05D005333 ORTHO05D005776 3.2e-24 115.2 104 60.6
Oeu044201.1 Olea europaea HOM05D005333 ORTHO05D005776 4.2e-24 114.8 103 60.2
Sed0012264 Sechium edule HOM05D005333 ORTHO05D005776 5.4e-24 114.4 101 59.4
Thhalv10015097m.g Eutrema salsugineum HOM05D005333 ORTHO05D005776 7.1e-24 114.0 110 55.5
Sp6g24220 Schrenkiella parvula HOM05D005333 ORTHO05D005776 7.1e-24 114.0 110 54.5
AUR62011139 Chenopodium quinoa HOM05D005333 ORTHO05D005776 9.3e-24 113.6 107 56.1
Lj4g0001981 Lotus japonicus HOM05D005333 ORTHO05D005776 1.2e-23 113.2 105 59.0
TPR.G26498 Trifolium pratense HOM05D005333 ORTHO05D005776 2.7e-23 112.1 104 55.8
Migut.H01282 Erythranthe guttata HOM05D005333 ORTHO05D005776 4.6e-23 111.3 104 59.6
C03p11490 Brassica napus HOM05D005333 ORTHO05D005776 6.0e-23 110.9 110 53.6
PGR102G2059 Punica granatum HOM05D005333 ORTHO05D005776 6.0e-23 110.9 110 58.2
SGA_v2.0_scaffold49G18402 Striga asiatica HOM05D005333 ORTHO05D005776 6.0e-23 110.9 111 54.1
MELO3C010337.2 Cucumis melo HOM05D005333 ORTHO05D005776 1.0e-22 110.2 83 63.9
Peaxi162Scf00046g00622 Petunia axillaris HOM05D005333 ORTHO05D005776 1.0e-22 110.2 104 55.8
A03p09910 Brassica napus HOM05D005333 ORTHO05D005776 1.3e-22 109.8 110 52.7
BolC3t13621H Brassica oleracea HOM05D005333 ORTHO05D005776 1.3e-22 109.8 110 53.6
BraA03t10304Z Brassica rapa HOM05D005333 ORTHO05D005776 1.3e-22 109.8 110 53.6
SGA_v2.0_scaffold109G31056 Striga asiatica HOM05D005333 ORTHO05D005776 1.3e-22 109.8 106 54.7
Glyma.17G114100 Glycine max HOM05D005333 ORTHO05D005776 2.3e-22 109.0 102 56.9
MBI01_g15682_MAGBIO Magnolia biondii HOM05D005333 ORTHO05D005776 2.3e-22 109.0 78 69.2
Sopen07g004160 Solanum pennellii HOM05D005333 ORTHO05D005776 3.0e-22 108.6 107 54.2
MBI01_g45309_MAGBIO Magnolia biondii HOM05D005333 ORTHO05D005776 3.9e-22 108.2 78 69.2
Solyc07g008270.3 Solanum lycopersicum HOM05D005333 ORTHO05D005776 3.9e-22 108.2 107 54.2
Ciclev10010320m.g Citrus clementina HOM05D005333 ORTHO05D005776 6.7e-22 107.5 104 53.8
Lalb_Chr07g0179001 Lupinus albus HOM05D005333 ORTHO05D005776 6.7e-22 107.5 102 59.8
PGSC0003DMG400019893 Solanum tuberosum HOM05D005333 ORTHO05D005776 1.1e-21 106.7 107 53.3
Aqoxy7G03689 Aquilegia oxysepala HOM05D005333 ORTHO05D005776 2.5e-21 105.5 103 56.3
Glyma.13G166400 Glycine max HOM05D005333 ORTHO05D005776 2.5e-21 105.5 102 54.9
CARHR192640 Cardamine hirsuta HOM05D005333 ORTHO05D005776 5.6e-21 104.4 112 50.9
ECA246G0448 Erigeron canadensis HOM05D005333 ORTHO05D005776 1.6e-20 102.8 112 53.6
Phvul.003G165300 Phaseolus vulgaris HOM05D005333 ORTHO05D005776 1.6e-20 102.8 101 54.5
COL.COLO4_35113 Corchorus olitorius HOM05D005333 ORTHO05D005776 2.1e-20 102.4 160 41.9
Rhsim01G0068900 Rhododendron simsii HOM05D005333 ORTHO05D005776 2.1e-20 102.4 77 72.7
BcaB05g22866 Brassica carinata HOM05D005333 ORTHO05D005776 3.7e-20 101.7 110 49.1
Lsat_1_v5_gn_5_31321 Lactuca sativa HOM05D005333 ORTHO05D005776 4.8e-20 101.3 111 51.4
Aa31LG1G14430 Aethionema arabicum HOM05D005333 ORTHO05D005776 6.2e-20 100.9 108 50.9
CDE10G0227 Ceratophyllum demersum HOM05D005333 ORTHO05D005776 6.2e-20 100.9 78 62.8
BraA02t05559Z Brassica rapa HOM05D005333 ORTHO05D005776 4.0e-19 98.2 107 48.6
Hma1.2p1_0931F.1_g238060 Hydrangea macrophylla HOM05D005333 ORTHO05D005776 5.3e-19 97.8 74 67.6
BcaC03g13741 Brassica carinata HOM05D005333 ORTHO05D005776 6.9e-19 97.4 107 48.6
BolC2t07023H Brassica oleracea HOM05D005333 ORTHO05D005776 6.9e-19 97.4 107 48.6
VMungo1215G0455 Vigna mungo HOM05D005333 ORTHO05D005776 6.9e-19 97.4 102 51.0
CDE04G2910 Ceratophyllum demersum HOM05D005333 ORTHO05D005776 2.0e-18 95.9 79 60.8
CDE10G0631 Ceratophyllum demersum HOM05D005333 ORTHO05D005776 5.8e-18 94.4 78 61.5
SGA_v2.0_scaffold3596G54365 Striga asiatica HOM05D005333 ORTHO05D005776 5.8e-18 94.4 101 49.5
MD05G1026100 Malus domestica HOM05D005333 ORTHO05D005776 7.6e-18 94.0 51 86.3
A02p06080 Brassica napus HOM05D005333 ORTHO05D005776 1.3e-17 93.2 107 46.7
Nn2g12039 Nelumbo nucifera HOM05D005333 ORTHO05D005776 2.2e-17 92.4 51 84.3
BNapus_Darmor_BZH_scaffold_38p01760 Brassica napus HOM05D005333 ORTHO05D005776 2.9e-17 92.0 108 45.4
SalBow6G5031 Salvia bowleyana HOM05D005333 ORTHO05D005776 2.9e-17 92.0 52 82.7
HanXRQChr06g0182851 Helianthus annuus HOM05D005333 ORTHO05D005776 6.4e-17 90.9 104 48.1
unitig_748.g8609 Utricularia gibba HOM05D005333 ORTHO05D005776 4.2e-16 88.2 58 70.7
Actinidia21980 Actinidia chinensis HOM05D001011 ORTHO05D005776 2.7e-15 85.5 74 60.8
Atru.chr7.1705 Acer truncatum HOM05D006080 ORTHO05D007382 7.9e-15 84.0 64 65.6
Sabra18G0111200 Salix brachista HOM05D002758 ORTHO05D005776 3.3e-13 78.6 112 44.6
AagrBONN_evm.TU.Sc2ySwM_344.103 Anthoceros agrestis HOM05D005333 ORTHO05D005776 2.1e-12 75.9 108 44.4
Mapoly0008s0076 Marchantia polymorpha HOM05D005333 ORTHO05D005776 3.7e-12 75.1 103 41.7
Zm00001eb212180 Zea mays HOM05D005333 ORTHO05D005776 3.7e-12 75.1 107 43.0
Pp3c15_5230 Physcomitrium patens HOM05D005333 ORTHO05D005776 4.8e-12 74.7 106 39.6
Os03g0811800 Oryza sativa ssp. japonica HOM05D005333 ORTHO05D005776 1.8e-11 72.8 107 43.9
AagrBONN_evm.TU.Sc2ySwM_344.112 Anthoceros agrestis HOM05D005333 ORTHO05D005776 4.0e-11 71.6 103 47.6
Zm00001eb103590 Zea mays HOM05D001170 ORTHO05D006602 2.0e-10 69.3 52 61.5
AL5G13030 Arabidopsis lyrata HOM05D005333 ORTHO05D005776 5.8e-10 67.8 52 63.5
CBR_g19308 Chara braunii HOM05D005333 ORTHO05D005776 2.9e-09 65.5 41 70.7
SMO116G0310 Selaginella moellendorffii HOM05D005333 ORTHO05D005776 8.4e-09 63.9 63 55.6
Zm00001eb091680 Zea mays HOM05D001170 ORTHO05D006602 8.4e-09 63.9 52 61.5
Zm00001eb091690 Zea mays HOM05D001170 ORTHO05D006602 8.4e-09 63.9 52 61.5
PRCOL_00005826 Prasinoderma coloniale HOM05D005333 ORTHO05D005776 1.4e-08 63.2 44 56.8
ATR0618G145 Amborella trichopoda HOM05D005333 ORTHO05D005776 1.9e-08 62.8 49 59.2
SMO197G0073 Selaginella moellendorffii HOM05D005333 ORTHO05D005776 5.5e-08 61.2 61 49.2
COL.COLO4_00391 Corchorus olitorius HOM05D006856 ORTHO05D008513 2.3e-06 55.8 38 65.8
ATCG00760 Arabidopsis thaliana HOM05D005333 ORTHO05D005776 3.0e-06 55.5 38 60.5
BolC7t41709H Brassica oleracea HOM05D005333 ORTHO05D005776 3.0e-06 55.5 38 60.5
BolSC29t60528H Brassica oleracea HOM05D005333 ORTHO05D005776 3.0e-06 55.5 38 60.5
BolSC29t60609H Brassica oleracea HOM05D005333 ORTHO05D005776 3.0e-06 55.5 38 60.5
BolSC35t60669H Brassica oleracea HOM05D005333 ORTHO05D005776 3.0e-06 55.5 38 60.5
BolSC35t60730H Brassica oleracea HOM05D005333 ORTHO05D005776 3.0e-06 55.5 38 60.5
BraA06t25383Z Brassica rapa HOM05D005333 ORTHO05D005776 3.0e-06 55.5 38 60.5
BraSC103t45446Z Brassica rapa HOM05D005333 ORTHO05D005776 3.0e-06 55.5 38 60.5
BraSC138t45554Z Brassica rapa HOM05D005333 ORTHO05D005776 3.0e-06 55.5 38 60.5
BraSC143t45636Z Brassica rapa HOM05D005333 ORTHO05D005776 3.0e-06 55.5 38 60.5
BraSC58t46440Z Brassica rapa HOM05D005333 ORTHO05D005776 3.0e-06 55.5 38 60.5
BraSC58t46501Z Brassica rapa HOM05D005333 ORTHO05D005776 3.0e-06 55.5 38 60.5
BraSC59t46571Z Brassica rapa HOM05D005333 ORTHO05D005776 3.0e-06 55.5 38 60.5
DCAR_032519 Daucus carota HOM05D005333 ORTHO05D005776 3.0e-06 55.5 38 60.5
FAN10G1907 Fragaria x ananassa HOM05D002824 ORTHO05D005776 3.0e-06 55.5 38 60.5
PSO548G0025 Papaver somniferum HOM05D005333 ORTHO05D005776 3.0e-06 55.5 38 60.5
PGR111G0044 Punica granatum HOM05D005333 ORTHO05D005776 3.0e-06 55.5 38 60.5
Gorai.009G350300 Gossypium raimondii HOM05D005333 ORTHO05D005776 6.7e-06 54.3 38 60.5


User provided reference genes

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