Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.7G243100 Prunus persica HOM05D003537 ORTHO05D004180 3.1e-53 211.8 132 100.0
MD15G1173100 Malus domestica HOM05D003537 ORTHO05D004180 4.2e-42 174.9 132 81.1
MD02G1031600 Malus domestica HOM05D003537 ORTHO05D004180 5.5e-42 174.5 132 73.5
RcHm_v2.0_Chr2g0088401 Rosa chinensis HOM05D003537 ORTHO05D004180 3.0e-40 168.7 130 79.2
FAN23G0028 Fragaria x ananassa HOM05D003537 ORTHO05D004180 5.1e-40 167.9 130 71.5
FvH4_1g03260 Fragaria vesca HOM05D003537 ORTHO05D004180 9.7e-39 163.7 130 81.5
FAN19G1671 Fragaria x ananassa HOM05D003537 ORTHO05D004180 9.7e-39 163.7 130 81.5
FAN28G2448 Fragaria x ananassa HOM05D003537 ORTHO05D004180 4.8e-38 161.4 130 80.8
Cpa.g.sc75.27 Carica papaya HOM05D003537 ORTHO05D004180 1.2e-36 156.8 132 62.1
Cfa003377 Carpinus fangiana HOM05D003537 ORTHO05D004180 2.9e-35 152.1 132 75.0
QL10p023445 Quercus lobata HOM05D003537 ORTHO05D004180 1.9e-34 149.4 130 57.7
Haze_25576 Corylus avellana HOM05D003537 ORTHO05D004180 7.2e-34 147.5 132 62.1
Manes.06G058601 Manihot esculenta HOM05D003537 ORTHO05D004180 2.7e-33 145.6 132 56.1
CANSAT11G2285 Cannabis sativa HOM05D003537 ORTHO05D004180 6.1e-33 144.4 132 62.1
Duzib150G0412 Durio zibethinus HOM05D003537 ORTHO05D004180 1.3e-32 143.3 132 53.8
Manes.14G132200 Manihot esculenta HOM05D003537 ORTHO05D004180 5.1e-32 141.4 127 66.1
Gohir.A06G055900 Gossypium hirsutum HOM05D003537 ORTHO05D004180 8.7e-32 140.6 132 55.3
TAR625G0117 Trochodendron aralioides HOM05D003537 ORTHO05D004180 8.7e-32 140.6 132 67.4
Atru.chr7.1160 Acer truncatum HOM05D003537 ORTHO05D004180 1.1e-31 140.2 132 65.2
CiPaw.04G171200 Carya illinoinensis HOM05D003537 ORTHO05D004180 1.1e-31 140.2 137 56.2
Gohir.D06G054550 Gossypium hirsutum HOM05D003537 ORTHO05D004180 1.1e-31 140.2 132 55.3
Actinidia40471 Actinidia chinensis HOM05D003537 ORTHO05D004180 1.5e-31 139.8 132 56.1
Gorai.010G063900 Gossypium raimondii HOM05D003537 ORTHO05D004180 2.5e-31 139.0 132 56.8
Nn8g39452 Nelumbo nucifera HOM05D003537 ORTHO05D004180 5.7e-31 137.9 132 68.9
PGR142G2689 Punica granatum HOM05D003537 ORTHO05D004180 7.4e-31 137.5 132 52.3
TWI34G1168 Tripterygium wilfordii HOM05D003537 ORTHO05D004180 7.4e-31 137.5 132 65.2
Dinv41510 Davidia involucrata HOM05D003537 ORTHO05D004180 9.7e-31 137.1 132 68.2
Gohir.A13G199600 Gossypium hirsutum HOM05D003537 ORTHO05D004180 9.7e-31 137.1 132 53.8
Gohir.D13G205100 Gossypium hirsutum HOM05D003537 ORTHO05D004180 9.7e-31 137.1 132 52.3
Gorai.013G234000 Gossypium raimondii HOM05D003537 ORTHO05D004180 9.7e-31 137.1 132 52.3
Glyma.04G147800 Glycine max HOM05D003537 ORTHO05D004180 2.2e-30 136.0 132 65.2
Ciclev10009876m.g Citrus clementina HOM05D003537 ORTHO05D004180 2.8e-30 135.6 131 55.7
GSVIVG01015532001 Vitis vinifera HOM05D003537 ORTHO05D004180 2.8e-30 135.6 133 59.4
Actinidia21987 Actinidia chinensis HOM05D003537 ORTHO05D004180 3.7e-30 135.2 133 54.1
Glyma.06G222000 Glycine max HOM05D003537 ORTHO05D004180 3.7e-30 135.2 134 70.1
Thecc.09G126600 Theobroma cacao HOM05D003537 ORTHO05D004180 8.2e-30 134.0 132 52.3
Ca_21681_v3 Cicer arietinum L. HOM05D003537 ORTHO05D004180 1.1e-29 133.7 133 57.1
TWI63G0509 Tripterygium wilfordii HOM05D003537 ORTHO05D004180 1.4e-29 133.3 132 61.4
arahy.Tifrunner.gnm1.ann1.F0XIJD Arachis hypogaea HOM05D003537 ORTHO05D004180 2.4e-29 132.5 134 57.5
arahy.Tifrunner.gnm1.ann1.P86YY0 Arachis hypogaea HOM05D003537 ORTHO05D004180 2.4e-29 132.5 134 57.5
Glyma.17G114800 Glycine max HOM05D003537 ORTHO05D004180 3.1e-29 132.1 134 52.2
Nn2g12030 Nelumbo nucifera HOM05D003537 ORTHO05D004180 6.9e-29 131.0 133 62.4
TAR636G0369 Trochodendron aralioides HOM05D003537 ORTHO05D004180 6.9e-29 131.0 132 57.6
Phvul.003G164500 Phaseolus vulgaris HOM05D003537 ORTHO05D004180 1.5e-28 129.8 133 68.4
THA.LOC104808988 Tarenaya hassleriana HOM05D003537 ORTHO05D004180 1.5e-28 129.8 133 60.2
VMungo1215G2386 Vigna mungo HOM05D003537 ORTHO05D004180 2.0e-28 129.4 133 65.4
ClCG11G003050 Citrullus lanatus HOM05D003537 ORTHO05D004180 3.4e-28 128.6 138 59.4
Lalb_Chr07g0178961 Lupinus albus HOM05D003537 ORTHO05D004180 3.4e-28 128.6 133 62.4
CsaV3_2G002870 Cucumis sativus L. HOM05D003537 ORTHO05D004180 5.9e-28 127.9 135 51.9
Sed0005083 Sechium edule HOM05D003537 ORTHO05D004180 7.7e-28 127.5 135 56.3
Psat4g040120 Pisum sativum HOM05D003537 ORTHO05D004180 1.0e-27 127.1 134 59.7
Medtr4g114180 Medicago truncatula HOM05D003537 ORTHO05D004180 2.2e-27 125.9 134 50.7
Cc06_g08500 Coffea canephora HOM05D003537 ORTHO05D004180 6.5e-27 124.4 133 50.4
Lj4g0026965 Lotus japonicus HOM05D003537 ORTHO05D004180 1.4e-26 123.2 133 55.6
Peaxi162Scf00157g01525 Petunia axillaris HOM05D003537 ORTHO05D004180 1.6e-25 119.8 132 56.1
Nitab4.5_0002658g0060 Nicotiana tabacum HOM05D003537 ORTHO05D004180 2.1e-25 119.4 134 48.5
Nitab4.5_0010481g0030 Nicotiana tabacum HOM05D003537 ORTHO05D004180 2.1e-25 119.4 134 52.2
Glyma.13G167200 Glycine max HOM05D003537 ORTHO05D004180 3.6e-25 118.6 132 47.0
Hma1.2p1_0018F.1_g012400 Hydrangea macrophylla HOM05D003537 ORTHO05D004180 3.6e-25 118.6 140 47.9
Duzib168G0240 Durio zibethinus HOM05D003537 ORTHO05D004180 1.0e-24 117.1 110 54.5
EL10Ac8g18657 Beta vulgaris HOM05D003537 ORTHO05D004180 1.4e-24 116.7 133 53.4
THA.LOC104815279 Tarenaya hassleriana HOM05D003537 ORTHO05D004180 1.8e-24 116.3 134 59.0
Lsat_1_v5_gn_7_45281 Lactuca sativa HOM05D003537 ORTHO05D004180 3.0e-24 115.5 134 52.2
TPR.G10724 Trifolium pratense HOM05D003537 ORTHO05D004180 5.1e-24 114.8 144 48.6
Eucgr.C01175 Eucalyptus grandis HOM05D003537 ORTHO05D004180 6.7e-24 114.4 120 48.3
Oeu018469.1 Olea europaea HOM05D003537 ORTHO05D004180 1.5e-23 113.2 132 56.8
Potri.018G068300 Populus trichocarpa HOM05D003537 ORTHO05D004180 2.0e-23 112.8 136 47.8
Solyc12g009440.2 Solanum lycopersicum HOM05D003537 ORTHO05D004180 2.6e-23 112.5 134 58.2
ECA240G1743 Erigeron canadensis HOM05D003537 ORTHO05D004180 4.4e-23 111.7 135 53.3
Sopen12g004440 Solanum pennellii HOM05D003537 ORTHO05D004180 4.4e-23 111.7 134 58.2
MBI01_g36269_MAGBIO Magnolia biondii HOM05D003537 ORTHO05D004180 1.3e-22 110.2 137 65.0
Oeu007500.1 Olea europaea HOM05D003537 ORTHO05D004180 4.8e-22 108.2 132 59.8
A01p25800 Brassica napus HOM05D003537 ORTHO05D004180 6.3e-22 107.8 139 57.6
BraA01t02496Z Brassica rapa HOM05D003537 ORTHO05D004180 8.2e-22 107.5 139 57.6
Lalb_Chr13g0301861 Lupinus albus HOM05D003537 ORTHO05D004180 1.1e-21 107.1 131 61.8
Rhsim01G0071100 Rhododendron simsii HOM05D003537 ORTHO05D004180 1.8e-21 106.3 133 54.9
MELO3C004506.2 Cucumis melo HOM05D003537 ORTHO05D004180 2.4e-21 105.9 148 49.3
BcaB05g23065 Brassica carinata HOM05D003537 ORTHO05D004180 3.1e-21 105.5 141 60.3
arahy.Tifrunner.gnm1.ann1.4IXQ36 Arachis hypogaea HOM05D003537 ORTHO05D004180 6.9e-21 104.4 107 58.9
arahy.Tifrunner.gnm1.ann1.EPB35R Arachis hypogaea HOM05D003537 ORTHO05D004180 6.9e-21 104.4 107 58.9
BolC1t03207H Brassica oleracea HOM05D003537 ORTHO05D004180 1.2e-20 103.6 139 59.0
BraA06t25666Z Brassica rapa HOM05D003537 ORTHO05D004180 2.0e-20 102.8 103 69.9
PSO170G5454 Papaver somniferum HOM05D003537 ORTHO05D004180 2.0e-20 102.8 138 50.0
QL02p021910 Quercus lobata HOM05D003537 ORTHO05D004180 2.6e-20 102.4 130 44.6
CARHR156330 Cardamine hirsuta HOM05D003537 ORTHO05D004180 3.4e-20 102.1 141 55.3
A06p19950 Brassica napus HOM05D003537 ORTHO05D004180 4.5e-20 101.7 147 51.7
BraA06t25078Z Brassica rapa HOM05D003537 ORTHO05D004180 4.5e-20 101.7 134 53.0
PSO455G0045 Papaver somniferum HOM05D003537 ORTHO05D004180 4.5e-20 101.7 136 49.3
vmacro20557 Vaccinium macrocarpon HOM05D003537 ORTHO05D004180 4.5e-20 101.7 133 54.1
BcaC09g49812 Brassica carinata HOM05D003537 ORTHO05D004180 5.9e-20 101.3 139 59.7
C01p32690 Brassica napus HOM05D003537 ORTHO05D004180 5.9e-20 101.3 139 59.7
AUR62011130 Chenopodium quinoa HOM05D003537 ORTHO05D004180 5.9e-20 101.3 136 57.4
Aa31LG8G16720 Aethionema arabicum HOM05D003537 ORTHO05D004180 1.0e-19 100.5 125 50.4
A06p27250 Brassica napus HOM05D003537 ORTHO05D004180 1.7e-19 99.8 134 53.0
AUR62013357 Chenopodium quinoa HOM05D003537 ORTHO05D004180 1.7e-19 99.8 136 56.6
Ciclev10009875m.g Citrus clementina HOM05D003537 ORTHO05D004180 1.4e-18 96.7 132 55.3
BcaB02g10692 Brassica carinata HOM05D003537 ORTHO05D004180 1.9e-18 96.3 100 67.0
CiPaw.08G011800 Carya illinoinensis HOM05D003537 ORTHO05D004180 1.9e-18 96.3 132 57.6
PGSC0003DMG400002918 Solanum tuberosum HOM05D005825 ORTHO05D006483 1.9e-18 96.3 108 61.1
CDE06G2093 Ceratophyllum demersum HOM05D003537 ORTHO05D004180 3.2e-18 95.5 130 53.8
Sp5g14270 Schrenkiella parvula HOM05D003537 ORTHO05D004180 4.2e-18 95.1 141 53.9
FAN15G0527 Fragaria x ananassa HOM05D003537 ORTHO05D004180 5.5e-18 94.7 131 57.3
FAN27G1347 Fragaria x ananassa HOM05D003537 ORTHO05D004180 5.5e-18 94.7 131 57.3
Ah.14g079820 Amaranthus hybridus HOM05D003537 ORTHO05D004180 7.2e-18 94.4 132 46.2
AL5G26940 Arabidopsis lyrata HOM05D003537 ORTHO05D004180 1.2e-17 93.6 140 40.7
CDE04G0424 Ceratophyllum demersum HOM05D003537 ORTHO05D004180 1.2e-17 93.6 130 53.1
Haze_21529 Corylus avellana HOM05D003537 ORTHO05D004180 1.2e-17 93.6 132 43.9
Lalb_Chr08g0244061 Lupinus albus HOM05D003537 ORTHO05D004180 1.2e-17 93.6 137 56.2
RhsimUnG0194700 Rhododendron simsii HOM05D003537 ORTHO05D004180 1.2e-17 93.6 114 57.0
arahy.Tifrunner.gnm1.ann1.9FI3T7 Arachis hypogaea HOM05D003537 ORTHO05D004180 1.6e-17 93.2 132 40.2
arahy.Tifrunner.gnm1.ann1.DMU7Q7 Arachis hypogaea HOM05D003537 ORTHO05D004180 1.6e-17 93.2 132 40.2
BcaB01g00893 Brassica carinata HOM05D003537 ORTHO05D004180 1.6e-17 93.2 134 38.8
C03p71880 Brassica napus HOM05D003537 ORTHO05D004180 1.6e-17 93.2 147 53.7
HanXRQChr09g0242821 Helianthus annuus HOM05D003537 ORTHO05D004180 1.6e-17 93.2 138 59.4
Dinv18245 Davidia involucrata HOM05D003537 ORTHO05D004180 2.1e-17 92.8 132 54.5
MSTRG.21979 Avicennia marina HOM05D003537 ORTHO05D004180 2.7e-17 92.4 132 38.6
Prupe.1G480000 Prunus persica HOM05D003537 ORTHO05D004180 2.7e-17 92.4 131 55.0
FAN26G0344 Fragaria x ananassa HOM05D003537 ORTHO05D004180 3.6e-17 92.0 57 86.0
SGA_v2.0_scaffold12G06124 Striga asiatica HOM05D003537 ORTHO05D004180 3.6e-17 92.0 129 41.9
Migut.K00479 Erythranthe guttata HOM05D003537 ORTHO05D004180 4.7e-17 91.7 136 42.6
FvH4_2g29200 Fragaria vesca HOM05D003537 ORTHO05D004180 4.7e-17 91.7 131 56.5
AT3G47650 Arabidopsis thaliana HOM05D003537 ORTHO05D004180 6.1e-17 91.3 140 50.7
BcaC01g01786 Brassica carinata HOM05D003537 ORTHO05D004180 6.1e-17 91.3 147 49.0
Cpa.g.sc259.5 Carica papaya HOM05D003537 ORTHO05D004180 6.1e-17 91.3 136 57.4
RcHm_v2.0_Chr6g0298061 Rosa chinensis HOM05D003537 ORTHO05D004180 8.0e-17 90.9 131 55.0
Potri.018G028500 Populus trichocarpa HOM05D003537 ORTHO05D004180 1.4e-16 90.1 103 57.3
Gohir.A06G098204 Gossypium hirsutum HOM05D003537 ORTHO05D004180 1.8e-16 89.7 133 46.6
Gorai.010G114400 Gossypium raimondii HOM05D003537 ORTHO05D004180 1.8e-16 89.7 134 47.0
Thecc.09G026400 Theobroma cacao HOM05D003537 ORTHO05D004180 1.8e-16 89.7 132 55.3
Carub.0005s1378 Capsella rubella HOM05D003537 ORTHO05D004180 2.3e-16 89.4 139 54.7
HPP92_000667 Vanilla planifolia HOM05D003537 ORTHO05D004180 2.3e-16 89.4 136 52.2
Os06g0332800 Oryza sativa ssp. japonica HOM05D003537 ORTHO05D004180 5.2e-16 88.2 95 72.6
Sabra18G0030700 Salix brachista HOM05D003537 ORTHO05D004180 8.8e-16 87.4 102 58.8
Glyma.04G067500 Glycine max HOM05D003537 ORTHO05D004180 1.1e-15 87.0 123 56.9
unitig_26.g9662 Utricularia gibba HOM05D003537 ORTHO05D004180 1.5e-15 86.7 153 35.9
COL.COLO4_18845 Corchorus olitorius HOM05D003537 ORTHO05D004180 2.0e-15 86.3 95 45.3
Dinv15950 Davidia involucrata HOM05D003537 ORTHO05D004180 2.6e-15 85.9 132 52.3
Thhalv10010812m.g Eutrema salsugineum HOM05D003537 ORTHO05D004180 4.4e-15 85.1 141 48.9
Lj1g0012711 Lotus japonicus HOM05D003537 ORTHO05D004180 4.4e-15 85.1 133 45.1
VMungo1309G0037 Vigna mungo HOM05D003537 ORTHO05D004180 5.7e-15 84.7 119 43.7
TPR.G3106 Trifolium pratense HOM05D003537 ORTHO05D004180 9.7e-15 84.0 139 46.0
CSS0014531 Camellia sinensis var. sinensis HOM05D003537 ORTHO05D004180 2.2e-14 82.8 111 49.5
CsaV3_3G046470 Cucumis sativus L. HOM05D003537 ORTHO05D004180 2.2e-14 82.8 134 44.8
Migut.K00478 Erythranthe guttata HOM05D003537 ORTHO05D004180 2.2e-14 82.8 137 43.8
BcaC01g02287 Brassica carinata HOM05D003537 ORTHO05D004180 8.2e-14 80.9 104 44.2
Lsat_1_v5_gn_8_58621 Lactuca sativa HOM05D003537 ORTHO05D004180 8.2e-14 80.9 78 51.3
Aqoxy7G02181 Aquilegia oxysepala HOM05D003537 ORTHO05D004180 1.4e-13 80.1 136 54.4
Manes.16G121200 Manihot esculenta HOM05D003537 ORTHO05D004180 1.4e-13 80.1 108 56.5
Psat0s2233g0360 Pisum sativum HOM05D003537 ORTHO05D004180 1.4e-13 80.1 145 42.1
Gohir.A06G143050 Gossypium hirsutum HOM05D003537 ORTHO05D004180 1.8e-13 79.7 80 51.2
SGA_v2.0_scaffold17G08031 Striga asiatica HOM05D003537 ORTHO05D004180 2.4e-13 79.3 133 41.4
Glyma.06G069100 Glycine max HOM05D003537 ORTHO05D004180 3.1e-13 79.0 122 54.9
Medtr3g107397 Medicago truncatula HOM05D003537 ORTHO05D004180 4.1e-13 78.6 141 44.0
Hund09242 Selenicereus undatus HOM05D003537 ORTHO05D004180 4.1e-13 78.6 95 64.2
CANSAT25G1571 Cannabis sativa HOM05D003537 ORTHO05D004180 7.0e-13 77.8 136 36.0
ClCG05G016980 Citrullus lanatus HOM05D003537 ORTHO05D004180 7.0e-13 77.8 92 56.5
FAN24G0346 Fragaria x ananassa HOM05D003537 ORTHO05D004180 9.1e-13 77.4 103 50.5
ATR1120G202 Amborella trichopoda HOM05D003537 ORTHO05D004180 2.0e-12 76.3 85 51.8
HanXRQChr16g0505371 Helianthus annuus HOM05D003537 ORTHO05D004180 2.0e-12 76.3 131 36.6
Mapoly0035s0118 Marchantia polymorpha HOM05D002896 ORTHO05D003263 2.0e-12 76.3 77 55.8
GSVIVG01035845001 Vitis vinifera HOM05D003537 ORTHO05D004180 2.0e-12 76.3 95 68.4
Eucgr.C02783 Eucalyptus grandis HOM05D003537 ORTHO05D004180 2.6e-12 75.9 130 36.9
MD15G1124500 Malus domestica HOM05D003537 ORTHO05D004180 3.5e-12 75.5 103 39.8
Gohir.D06G099500 Gossypium hirsutum HOM05D003537 ORTHO05D004180 4.5e-12 75.1 103 49.5
SalBow1G5494 Salvia bowleyana HOM05D003537 ORTHO05D004180 5.9e-12 74.7 104 39.4
Sed0007274 Sechium edule HOM05D003537 ORTHO05D004180 5.9e-12 74.7 111 44.1
DCAR_003091 Daucus carota HOM05D003537 ORTHO05D004180 1.0e-11 73.9 72 62.5
Cc08_g00790 Coffea canephora HOM05D003537 ORTHO05D004180 2.9e-11 72.4 132 39.4
PGR044G0105 Punica granatum HOM05D003537 ORTHO05D004180 3.8e-11 72.0 94 61.7
Pp3c18_21980 Physcomitrium patens HOM05D003537 ORTHO05D004180 8.5e-11 70.9 93 37.6
vmacro23102 Vaccinium macrocarpon HOM05D003537 ORTHO05D004180 2.5e-10 69.3 83 61.4
Atru.BG.3.p Acer truncatum HOM05D003537 ORTHO05D004180 1.6e-09 66.6 67 50.7
Peaxi162Scf00256g00035 Petunia axillaris HOM05D003537 ORTHO05D004180 1.6e-09 66.6 107 36.4
SEGI_36836 Sequoiadendron giganteum HOM05D003537 ORTHO05D004180 4.7e-09 65.1 83 49.4
ECA246G5170 Erigeron canadensis HOM05D003537 ORTHO05D004180 6.1e-09 64.7 88 39.8
GSVIVG01015534001 Vitis vinifera HOM05D003537 ORTHO05D004180 1.4e-08 63.5 66 50.0
MELO3C030460.2 Cucumis melo HOM05D003537 ORTHO05D004180 4.4e-07 58.5 97 47.4
Gohir.A10G065840 Gossypium hirsutum HOM05D003537 ORTHO05D004180 1.7e-06 56.6 47 59.6


User provided reference genes

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