Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.7G242700 Prunus persica HOM05D005825 ORTHO05D006483 7.0e-184 647.1 322 100.0
MD02G1032800 Malus domestica HOM05D005825 ORTHO05D006483 4.1e-160 568.2 322 86.6
RcHm_v2.0_Chr2g0088431 Rosa chinensis HOM05D005825 ORTHO05D006483 8.1e-140 500.7 326 76.7
Cfa003372 Carpinus fangiana HOM05D005825 ORTHO05D006483 2.2e-137 492.7 328 74.1
FAN19G0135 Fragaria x ananassa HOM05D005825 ORTHO05D006483 1.8e-131 473.0 325 73.8
FvH4_1g03280 Fragaria vesca HOM05D005825 ORTHO05D006483 3.1e-131 472.2 325 73.5
FAN23G1198 Fragaria x ananassa HOM05D005825 ORTHO05D006483 2.6e-130 469.2 327 73.4
FAN26G2420 Fragaria x ananassa HOM05D005825 ORTHO05D006483 7.6e-130 467.6 327 73.1
Cpa.g.sc75.29 Carica papaya HOM05D005825 ORTHO05D006483 4.9e-129 464.9 324 72.2
FAN28G2006 Fragaria x ananassa HOM05D005825 ORTHO05D006483 4.9e-129 464.9 326 72.7
Sed0008025 Sechium edule HOM05D005825 ORTHO05D006483 4.9e-129 464.9 327 70.6
CiPaw.03G244100 Carya illinoinensis HOM05D005825 ORTHO05D006483 6.5e-129 464.5 325 71.7
vmacro20556 Vaccinium macrocarpon HOM05D005825 ORTHO05D006483 2.5e-128 462.6 324 73.5
CANSAT11G1244 Cannabis sativa HOM05D005825 ORTHO05D006483 1.0e-126 457.2 325 70.5
Sabra02G0094300 Salix brachista HOM05D005825 ORTHO05D006483 1.3e-126 456.8 324 71.3
Ca_21683_v3 Cicer arietinum L. HOM05D005825 ORTHO05D006483 3.9e-126 455.3 325 72.0
Dinv36528 Davidia involucrata HOM05D005825 ORTHO05D006483 8.7e-126 454.1 324 70.7
Rhsim01G0070600 Rhododendron simsii HOM05D005825 ORTHO05D006483 8.7e-126 454.1 326 71.2
MELO3C004508.2 Cucumis melo HOM05D005825 ORTHO05D006483 1.9e-125 453.0 327 70.0
TWI34G0282 Tripterygium wilfordii HOM05D005825 ORTHO05D006483 2.5e-125 452.6 332 69.9
CsaV3_2G002850 Cucumis sativus L. HOM05D005825 ORTHO05D006483 2.8e-124 449.1 327 69.4
Lalb_Chr13g0301881 Lupinus albus HOM05D005825 ORTHO05D006483 2.8e-124 449.1 327 70.0
Phvul.003G164300 Phaseolus vulgaris HOM05D005825 ORTHO05D006483 2.8e-124 449.1 324 71.3
DCAR_009187 Daucus carota HOM05D005825 ORTHO05D006483 3.1e-123 445.7 324 68.5
Oeu007499.1 Olea europaea HOM05D005825 ORTHO05D006483 4.1e-123 445.3 328 68.6
MBI16_g24711_MAGBIO Magnolia biondii HOM05D005825 ORTHO05D006483 5.3e-123 444.9 323 68.1
Psat4g040200 Pisum sativum HOM05D005825 ORTHO05D006483 6.9e-123 444.5 325 70.5
Hund09127 Selenicereus undatus HOM05D005825 ORTHO05D006483 1.2e-122 443.7 327 68.5
Glyma.13G167400 Glycine max HOM05D005825 ORTHO05D006483 2.0e-122 443.0 324 69.1
THA.LOC104815280 Tarenaya hassleriana HOM05D005825 ORTHO05D006483 2.6e-122 442.6 324 69.8
Atru.chr7.1162 Acer truncatum HOM05D005825 ORTHO05D006483 3.4e-122 442.2 325 67.7
CSS0017066 Camellia sinensis var. sinensis HOM05D005825 ORTHO05D006483 4.5e-122 441.8 325 68.6
ClCG11G003030 Citrullus lanatus HOM05D005825 ORTHO05D006483 7.6e-122 441.0 323 68.4
Sc08g0006620 Simmondsia chinensis HOM05D005825 ORTHO05D006483 1.3e-121 440.3 335 68.1
Gorai.010G064100 Gossypium raimondii HOM05D005825 ORTHO05D006483 2.2e-121 439.5 327 69.4
EL10Ac8g18654 Beta vulgaris HOM05D005825 ORTHO05D006483 2.9e-121 439.1 324 67.3
CSS0027185 Camellia sinensis var. sinensis HOM05D005825 ORTHO05D006483 3.8e-121 438.7 325 68.3
Lj2C942T8 Lonicera japonica HOM05D005825 ORTHO05D006483 3.8e-121 438.7 350 65.4
PGR142G1018 Punica granatum HOM05D005825 ORTHO05D006483 3.8e-121 438.7 326 68.4
Migut.B01717 Erythranthe guttata HOM05D005825 ORTHO05D006483 5.0e-121 438.3 324 67.6
Nn2g12789 Nelumbo nucifera HOM05D005825 ORTHO05D006483 5.0e-121 438.3 327 67.0
Ciclev10008932m.g Citrus clementina HOM05D005825 ORTHO05D006483 8.4e-121 437.6 321 67.6
Actinidia40470 Actinidia chinensis HOM05D005825 ORTHO05D006483 1.4e-120 436.8 324 68.8
Rhsim01G0071200 Rhododendron simsii HOM05D005825 ORTHO05D006483 1.4e-120 436.8 336 69.0
arahy.Tifrunner.gnm1.ann1.1NB5KJ Arachis hypogaea HOM05D005825 ORTHO05D006483 1.9e-120 436.4 324 68.2
Gohir.D06G054601 Gossypium hirsutum HOM05D005825 ORTHO05D006483 1.9e-120 436.4 327 68.8
Lalb_Chr12g0197941 Lupinus albus HOM05D005825 ORTHO05D006483 1.9e-120 436.4 322 69.6
Peaxi162Scf00157g01524 Petunia axillaris HOM05D005825 ORTHO05D006483 1.9e-120 436.4 323 68.1
AL4G19680 Arabidopsis lyrata HOM05D005825 ORTHO05D006483 2.5e-120 436.0 325 67.4
Duzib168G1077 Durio zibethinus HOM05D005825 ORTHO05D006483 2.5e-120 436.0 325 68.0
Eucgr.C01173 Eucalyptus grandis HOM05D005825 ORTHO05D006483 2.5e-120 436.0 332 67.2
PSO675G5818 Papaver somniferum HOM05D005825 ORTHO05D006483 2.5e-120 436.0 325 67.7
Sabra14G0011800 Salix brachista HOM05D005825 ORTHO05D006483 2.5e-120 436.0 324 69.1
Sp4g09150 Schrenkiella parvula HOM05D005825 ORTHO05D006483 2.5e-120 436.0 324 66.7
arahy.Tifrunner.gnm1.ann1.9UEQ51 Arachis hypogaea HOM05D005825 ORTHO05D006483 3.2e-120 435.6 327 67.0
TAR625G0074 Trochodendron aralioides HOM05D005825 ORTHO05D006483 3.2e-120 435.6 323 68.4
AT2G26680 Arabidopsis thaliana HOM05D005825 ORTHO05D006483 5.5e-120 434.9 325 67.7
Thecc.09G126400 Theobroma cacao HOM05D005825 ORTHO05D006483 5.5e-120 434.9 327 68.5
MSTRG.19597 Avicennia marina HOM05D005825 ORTHO05D006483 7.2e-120 434.5 323 67.5
Carub.0004s0696 Capsella rubella HOM05D005825 ORTHO05D006483 7.2e-120 434.5 325 67.7
Potri.014G017900 Populus trichocarpa HOM05D005825 ORTHO05D006483 7.2e-120 434.5 324 68.5
Aqoxy5G01398 Aquilegia oxysepala HOM05D005825 ORTHO05D006483 9.3e-120 434.1 324 67.9
CAN.G1591.11 Capsicum annuum HOM05D005825 ORTHO05D006483 9.3e-120 434.1 323 66.9
Medtr4g114160 Medicago truncatula HOM05D005825 ORTHO05D006483 9.3e-120 434.1 324 69.1
A04p21320 Brassica napus HOM05D005825 ORTHO05D006483 1.6e-119 433.3 327 66.7
BraA04t17698Z Brassica rapa HOM05D005825 ORTHO05D006483 1.6e-119 433.3 327 66.7
Lj4g0013357 Lotus japonicus HOM05D005825 ORTHO05D006483 4.6e-119 431.8 322 68.0
Sopen12g004430 Solanum pennellii HOM05D005825 ORTHO05D006483 7.9e-119 431.0 323 66.6
Manes.06G058801 Manihot esculenta HOM05D005825 ORTHO05D006483 1.0e-118 430.6 271 77.1
AUR62013360 Chenopodium quinoa HOM05D005825 ORTHO05D006483 1.3e-118 430.3 290 72.8
Lsat_1_v5_gn_8_58680 Lactuca sativa HOM05D005825 ORTHO05D006483 1.3e-118 430.3 326 66.3
PSO782G3266 Papaver somniferum HOM05D005825 ORTHO05D006483 1.8e-118 429.9 328 66.8
SalBow3G4290 Salvia bowleyana HOM05D005825 ORTHO05D006483 1.8e-118 429.9 324 67.9
Solyc12g009430.2 Solanum lycopersicum HOM05D005825 ORTHO05D006483 1.8e-118 429.9 323 66.3
Aa31LG5G9110 Aethionema arabicum HOM05D003776 ORTHO05D004459 2.3e-118 429.5 325 67.4
Hma1.2p1_0018F.1_g012420 Hydrangea macrophylla HOM05D005825 ORTHO05D006483 5.1e-118 428.3 324 67.6
VMungo1215G3451 Vigna mungo HOM05D005825 ORTHO05D006483 5.1e-118 428.3 324 68.2
Hma1.2p1_2368F.1_g320700 Hydrangea macrophylla HOM05D005825 ORTHO05D006483 1.1e-117 427.2 324 67.6
Ah.09g226210 Amaranthus hybridus HOM05D005825 ORTHO05D006483 1.5e-117 426.8 324 65.4
C04p57230 Brassica napus HOM05D005825 ORTHO05D006483 1.9e-117 426.4 332 64.5
Lj2A929T15 Lonicera japonica HOM05D005825 ORTHO05D006483 1.9e-117 426.4 350 64.9
BcaB06g28186 Brassica carinata HOM05D005825 ORTHO05D006483 3.3e-117 425.6 322 66.1
Gohir.A06G056101 Gossypium hirsutum HOM05D005825 ORTHO05D006483 5.7e-117 424.9 329 66.9
unitig_748.g8100 Utricularia gibba HOM05D005825 ORTHO05D006483 2.2e-116 422.9 325 66.5
BolC4t27250H Brassica oleracea HOM05D005825 ORTHO05D006483 3.7e-116 422.2 329 64.4
Haze_25579 Corylus avellana HOM05D005825 ORTHO05D006483 1.8e-115 419.9 314 67.2
BcaC02g08209 Brassica carinata HOM05D005825 ORTHO05D006483 3.1e-115 419.1 327 64.5
HanXRQChr17g0537731 Helianthus annuus HOM05D005825 ORTHO05D006483 4.1e-115 418.7 323 66.6
Thhalv10002044m.g Eutrema salsugineum HOM05D005825 ORTHO05D006483 5.3e-115 418.3 324 65.7
PGSC0003DMG400002918 Solanum tuberosum HOM05D005825 ORTHO05D006483 2.6e-114 416.0 320 65.0
DCAR_017816 Daucus carota HOM05D005825 ORTHO05D006483 3.4e-114 415.6 361 62.3
arahy.Tifrunner.gnm1.ann1.85XGXJ Arachis hypogaea HOM05D005825 ORTHO05D006483 4.5e-114 415.2 324 64.5
arahy.Tifrunner.gnm1.ann1.R6UVTB Arachis hypogaea HOM05D005825 ORTHO05D006483 1.3e-113 413.7 324 64.5
SGA_v2.0_scaffold299G47720 Striga asiatica HOM05D005825 ORTHO05D006483 2.9e-113 412.5 323 65.0
Nitab4.5_0014105g0010 Nicotiana tabacum HOM05D005825 ORTHO05D006483 2.5e-112 409.5 317 65.6
HanXRQChr17g0537711 Helianthus annuus HOM05D005825 ORTHO05D006483 3.2e-112 409.1 321 66.0
Nitab4.5_0002658g0050 Nicotiana tabacum HOM05D005825 ORTHO05D006483 2.7e-111 406.0 317 64.7
Thhalv10023596m.g Eutrema salsugineum HOM05D005825 ORTHO05D006483 1.0e-110 404.1 326 63.2
HPP92_017605 Vanilla planifolia HOM05D005825 ORTHO05D006483 3.0e-110 402.5 326 63.8
CDE04G1080 Ceratophyllum demersum HOM05D005825 ORTHO05D006483 1.1e-109 400.6 329 64.1
QL10p023454 Quercus lobata HOM05D005825 ORTHO05D006483 3.3e-109 399.1 503 46.1
ATR0225G021 Amborella trichopoda HOM05D005825 ORTHO05D006483 8.2e-108 394.4 319 62.4
Os03g0566600 Oryza sativa ssp. japonica HOM05D005825 ORTHO05D006483 2.1e-103 379.8 261 71.6
Zm00001eb043030 Zea mays HOM05D005825 ORTHO05D006483 3.6e-103 379.0 264 70.5
HanXRQChr06g0180341 Helianthus annuus HOM05D005825 ORTHO05D006483 1.1e-99 367.5 289 65.1
AUR62011128 Chenopodium quinoa HOM05D005825 ORTHO05D006483 5.3e-99 365.2 326 59.5
SHI03392 Sapria himalayana HOM05D005825 ORTHO05D006483 5.3e-99 365.2 384 52.1
Potri.002G119800 Populus trichocarpa HOM05D005825 ORTHO05D006483 1.4e-83 313.9 187 82.9
SMO147G0115 Selaginella moellendorffii HOM05D005825 ORTHO05D006483 3.1e-83 312.8 311 51.4
AagrBONN_evm.TU.Sc2ySwM_344.1792 Anthoceros agrestis HOM05D005825 ORTHO05D006483 1.2e-82 310.8 265 57.4
TPR.G10697 Trifolium pratense HOM05D005825 ORTHO05D006483 2.9e-81 306.2 182 83.5
ECA246G2031 Erigeron canadensis HOM05D000004 ORTHO05D000002 8.5e-81 304.7 198 75.3
CiPaw.04G171000 Carya illinoinensis HOM05D005825 ORTHO05D006483 6.8e-78 295.0 175 80.0
GSVIVG01015529001 Vitis vinifera HOM05D005825 ORTHO05D006483 1.3e-76 290.8 170 82.4
Glyma.17G115000 Glycine max HOM05D005825 ORTHO05D006483 1.4e-75 287.3 175 81.1
Cc06_g08520 Coffea canephora HOM05D005825 ORTHO05D006483 3.3e-72 276.2 167 79.0
CARHR118580 Cardamine hirsuta HOM05D005825 ORTHO05D006483 2.0e-66 256.9 209 64.6
Ca_13270_v3 Cicer arietinum L. HOM05D005825 ORTHO05D006483 2.2e-52 210.3 187 59.4
Actinidia21988 Actinidia chinensis HOM05D005825 ORTHO05D006483 3.0e-49 199.9 122 78.7
Ca_14592_v3 Cicer arietinum L. HOM05D005825 ORTHO05D006483 1.5e-48 197.6 187 57.8
Eucgr.G00617 Eucalyptus grandis HOM05D005825 ORTHO05D006483 2.0e-45 187.2 118 74.6
VMungo0647G0470 Vigna mungo HOM05D005825 ORTHO05D006483 3.4e-45 186.4 135 64.4
Eucgr.B02426 Eucalyptus grandis HOM05D005825 ORTHO05D006483 4.9e-44 182.6 118 72.9
CARHR118590 Cardamine hirsuta HOM05D005825 ORTHO05D006483 1.2e-42 177.9 119 70.6
Eucgr.C03225 Eucalyptus grandis HOM05D005825 ORTHO05D006483 2.3e-41 173.7 112 72.3
Eucgr.E01840 Eucalyptus grandis HOM05D005825 ORTHO05D006483 7.1e-35 152.1 118 65.3
Eucgr.B02447 Eucalyptus grandis HOM05D005825 ORTHO05D006483 1.0e-33 148.3 95 74.7
TAR381G0761 Trochodendron aralioides HOM05D005825 ORTHO05D006483 3.3e-32 143.3 152 53.3
CAN.G204.2 Capsicum annuum HOM05D005825 ORTHO05D006483 1.1e-19 101.7 70 68.6
SalBow6G2945 Salvia bowleyana HOM05D000060 ORTHO05D000082 4.9e-12 76.3 122 41.8
VMungo0464G1687 Vigna mungo HOM05D005825 ORTHO05D006483 1.4e-11 74.7 49 73.5
Zm00001eb219900 Zea mays HOM05D005825 ORTHO05D006483 5.5e-11 72.8 162 34.0
MCO17G084 Micromonas commoda HOM05D051517 ORTHO05D006483 7.1e-11 72.4 173 28.9
Cre12.g488550 Chlamydomonas reinhardtii HOM05D024924 ORTHO05D006483 2.1e-10 70.9 155 34.2
PRCOL_00003044 Prasinoderma coloniale HOM05D024924 ORTHO05D006483 1.5e-08 64.7 152 31.6
Cre09.g386756 Chlamydomonas reinhardtii HOM05D005825 ORTHO05D006483 2.5e-08 63.9 191 28.8
Cre02.g103000 Chlamydomonas reinhardtii HOM05D024924 ORTHO05D006483 1.3e-07 61.6 135 32.6
Cre09.g386747 Chlamydomonas reinhardtii HOM05D005825 ORTHO05D006483 6.3e-07 59.3 165 30.3
Cre12.g552600 Chlamydomonas reinhardtii HOM05D024924 ORTHO05D006483 2.4e-06 57.4 156 30.1
MCO17G075 Micromonas commoda HOM05D051517 ORTHO05D006483 3.1e-06 57.0 176 26.1


User provided reference genes

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