Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.7G239600 Prunus persica HOM05D004174 ORTHO05D004624 7.2e-256 886.7 443 100.0
MD02G1035600 Malus domestica HOM05D004174 ORTHO05D004624 7.6e-221 770.4 448 86.6
MD00G1107300 Malus domestica HOM05D004174 ORTHO05D004624 3.3e-216 755.0 444 85.8
FvH4_1g03600 Fragaria vesca HOM05D004174 ORTHO05D004624 1.4e-211 739.6 445 83.6
FAN19G0954 Fragaria x ananassa HOM05D004174 ORTHO05D004624 3.2e-211 738.4 445 83.4
FAN23G0992 Fragaria x ananassa HOM05D004174 ORTHO05D004624 2.1e-210 735.7 445 83.1
FAN28G1355 Fragaria x ananassa HOM05D004174 ORTHO05D004624 1.9e-208 729.2 445 82.5
CiPaw.03G241700 Carya illinoinensis HOM05D004174 ORTHO05D004624 1.6e-207 726.1 449 82.0
RcHm_v2.0_Chr2g0089131 Rosa chinensis HOM05D004174 ORTHO05D004624 3.6e-207 724.9 440 83.0
FAN26G3217 Fragaria x ananassa HOM05D004174 ORTHO05D004624 1.8e-206 722.6 444 81.8
Cfa003346 Carpinus fangiana HOM05D004174 ORTHO05D004624 9.3e-203 710.3 442 80.8
Haze_25614 Corylus avellana HOM05D004174 ORTHO05D004624 1.1e-200 703.4 442 80.8
Dinv36548 Davidia involucrata HOM05D004174 ORTHO05D004624 1.5e-192 676.4 406 81.8
MD15G1175700 Malus domestica HOM05D004174 ORTHO05D004624 8.2e-191 670.6 496 73.0
Manes.06G050000 Manihot esculenta HOM05D004174 ORTHO05D004624 1.1e-190 670.2 445 78.0
Manes.14G130500 Manihot esculenta HOM05D004174 ORTHO05D004624 1.8e-190 669.5 445 76.6
Actinidia26403 Actinidia chinensis HOM05D004174 ORTHO05D004624 4.0e-190 668.3 440 76.6
Thecc.09G123000 Theobroma cacao HOM05D004174 ORTHO05D004624 4.9e-188 661.4 446 75.1
CANSAT11G0280 Cannabis sativa HOM05D004174 ORTHO05D004624 8.4e-188 660.6 448 74.8
QL02p087765 Quercus lobata HOM05D004174 ORTHO05D004624 8.4e-188 660.6 408 79.9
TWI34G0924 Tripterygium wilfordii HOM05D004174 ORTHO05D004624 1.1e-187 660.2 410 79.3
Potri.018G070400 Populus trichocarpa HOM05D004174 ORTHO05D004624 1.9e-187 659.4 449 73.3
Actinidia07434 Actinidia chinensis HOM05D004174 ORTHO05D004624 3.2e-187 658.7 440 75.0
Atru.chr7.1197 Acer truncatum HOM05D004174 ORTHO05D004624 5.5e-187 657.9 443 74.9
Gohir.A13G199200 Gossypium hirsutum HOM05D004174 ORTHO05D004624 3.5e-186 655.2 451 73.6
Hma1.2p1_0665F.1_g199150 Hydrangea macrophylla HOM05D004174 ORTHO05D004624 1.8e-185 652.9 441 75.1
Ciclev10008313m.g Citrus clementina HOM05D004174 ORTHO05D004624 2.3e-185 652.5 436 75.9
Gohir.D13G204700 Gossypium hirsutum HOM05D004174 ORTHO05D004624 3.0e-185 652.1 455 73.0
Gorai.013G233600 Gossypium raimondii HOM05D004174 ORTHO05D004624 1.1e-184 650.2 455 72.7
Eucgr.C04181 Eucalyptus grandis HOM05D004174 ORTHO05D004624 5.7e-184 647.9 427 74.9
vmacro06177 Vaccinium macrocarpon HOM05D004174 ORTHO05D004624 9.7e-184 647.1 443 74.5
COL.COLO4_05761 Corchorus olitorius HOM05D004174 ORTHO05D004624 3.7e-183 645.2 411 76.4
TAR383G0558 Trochodendron aralioides HOM05D004174 ORTHO05D004624 8.2e-183 644.0 419 77.3
Sabra18G0061500 Salix brachista HOM05D004174 ORTHO05D004624 3.8e-180 635.2 450 72.0
Potri.006G154200 Populus trichocarpa HOM05D004174 ORTHO05D004624 1.1e-179 633.6 408 75.7
Nn8g39387 Nelumbo nucifera HOM05D004174 ORTHO05D004624 5.5e-179 631.3 448 72.8
ClCG11G002850 Citrullus lanatus HOM05D004174 ORTHO05D004624 7.2e-179 630.9 395 75.9
THA.LOC104811038 Tarenaya hassleriana HOM05D004174 ORTHO05D004624 9.4e-179 630.6 440 71.1
Oeu058056.1 Olea europaea HOM05D004174 ORTHO05D004624 3.6e-178 628.6 402 75.1
Hund09144 Selenicereus undatus HOM05D004174 ORTHO05D004624 4.6e-178 628.2 440 71.6
TWI32G1270 Tripterygium wilfordii HOM05D004174 ORTHO05D004624 4.6e-178 628.2 442 72.6
AL6G31620 Arabidopsis lyrata HOM05D004174 ORTHO05D004624 1.0e-177 627.1 445 71.9
Duzib150G0384 Durio zibethinus HOM05D004174 ORTHO05D004624 1.4e-177 626.7 409 75.3
Cc06_g08790 Coffea canephora HOM05D004174 ORTHO05D004624 3.0e-177 625.5 387 78.3
MELO3C004525.2 Cucumis melo HOM05D004174 ORTHO05D004624 1.1e-176 623.6 412 73.3
CARHR192760 Cardamine hirsuta HOM05D004174 ORTHO05D004624 3.3e-176 622.1 444 70.3
Aqoxy7G02096 Aquilegia oxysepala HOM05D004174 ORTHO05D004624 5.7e-176 621.3 440 71.1
Carub.0006s1845 Capsella rubella HOM05D004174 ORTHO05D004624 9.7e-176 620.5 446 71.3
Sed0019119 Sechium edule HOM05D004174 ORTHO05D004624 9.7e-176 620.5 407 74.0
PGR102G0881 Punica granatum HOM05D004174 ORTHO05D004624 1.3e-175 620.2 452 70.8
Thhalv10013566m.g Eutrema salsugineum HOM05D004174 ORTHO05D004624 1.7e-175 619.8 446 70.2
CsaV3_2G002690 Cucumis sativus L. HOM05D004174 ORTHO05D004624 2.2e-175 619.4 412 72.8
Duzib187G0531 Durio zibethinus HOM05D004174 ORTHO05D004624 4.8e-175 618.2 430 73.0
AT5G20070 Arabidopsis thaliana HOM05D004174 ORTHO05D004624 1.1e-174 617.1 444 70.7
MSTRG.19607 Avicennia marina HOM05D004174 ORTHO05D004624 1.4e-174 616.7 402 74.4
Aa31LG8G2170 Aethionema arabicum HOM05D004174 ORTHO05D004624 3.1e-174 615.5 440 71.1
Peaxi162Scf02490g00007 Petunia axillaris HOM05D004174 ORTHO05D004624 4.1e-174 615.1 441 70.7
EL10Ac8g18616 Beta vulgaris HOM05D004174 ORTHO05D004624 5.3e-174 614.8 436 70.6
Psat1g025760 Pisum sativum HOM05D004174 ORTHO05D004624 3.4e-173 612.1 443 71.6
Ca_03159_v3 Cicer arietinum L. HOM05D004174 ORTHO05D004624 5.9e-173 611.3 411 73.7
Medtr2g054680 Medicago truncatula HOM05D004174 ORTHO05D004624 7.7e-173 610.9 432 71.8
Sp6g24340 Schrenkiella parvula HOM05D004174 ORTHO05D004624 5.0e-172 608.2 427 70.7
A02p06020 Brassica napus HOM05D004174 ORTHO05D004624 1.4e-171 606.7 405 74.1
BraA02t05553Z Brassica rapa HOM05D004174 ORTHO05D004624 1.4e-171 606.7 405 74.1
BcaB01g04811 Brassica carinata HOM05D004174 ORTHO05D004624 1.2e-170 603.6 424 71.5
THA.LOC104799651 Tarenaya hassleriana HOM05D004174 ORTHO05D004624 1.2e-170 603.6 423 70.7
BcaC03g13730 Brassica carinata HOM05D004174 ORTHO05D004624 1.6e-170 603.2 405 73.3
COL.COLO4_17917 Corchorus olitorius HOM05D004174 ORTHO05D004624 2.1e-170 602.8 393 75.8
CAN.G1966.1 Capsicum annuum HOM05D004174 ORTHO05D004624 2.7e-170 602.4 413 72.6
VMungo1309G2067 Vigna mungo HOM05D004174 ORTHO05D004624 4.7e-170 601.7 443 69.8
CSS0035220 Camellia sinensis var. sinensis HOM05D004174 ORTHO05D004624 3.0e-169 599.0 392 76.3
BolC3t13612H Brassica oleracea HOM05D004174 ORTHO05D004624 3.9e-169 598.6 430 70.2
Sc18g0000710 Simmondsia chinensis HOM05D004174 ORTHO05D004624 6.7e-169 597.8 388 75.3
Sopen06g031500 Solanum pennellii HOM05D004174 ORTHO05D004624 6.7e-169 597.8 390 74.4
C03p11380 Brassica napus HOM05D004174 ORTHO05D004624 8.8e-169 597.4 430 70.2
PGSC0003DMG400024321 Solanum tuberosum HOM05D004174 ORTHO05D004624 8.8e-169 597.4 384 75.0
TPR.G31095 Trifolium pratense HOM05D004174 ORTHO05D004624 8.8e-169 597.4 410 73.7
BcaB05g22875 Brassica carinata HOM05D004174 ORTHO05D004624 1.5e-168 596.7 405 72.8
Phvul.009G197200 Phaseolus vulgaris HOM05D004174 ORTHO05D004624 2.6e-168 595.9 413 71.4
A03p09800 Brassica napus HOM05D004174 ORTHO05D004624 3.3e-168 595.5 416 72.4
BraA03t10295Z Brassica rapa HOM05D004174 ORTHO05D004624 3.3e-168 595.5 416 72.4
SalBow3G2402 Salvia bowleyana HOM05D004174 ORTHO05D004624 9.7e-168 594.0 429 71.1
Solyc06g075080.4 Solanum lycopersicum HOM05D004174 ORTHO05D004624 9.7e-168 594.0 390 74.1
BNapus_Darmor_BZH_scaffold_38p01820 Brassica napus HOM05D004174 ORTHO05D004624 2.2e-167 592.8 405 72.8
Nitab4.5_0006698g0010 Nicotiana tabacum HOM05D004174 ORTHO05D004624 3.7e-167 592.0 443 70.2
MBI04_g24208_MAGBIO Magnolia biondii HOM05D004174 ORTHO05D004624 6.3e-167 591.3 437 70.0
DCAR_017828 Daucus carota HOM05D004174 ORTHO05D004624 1.4e-166 590.1 407 71.5
Glyma.06G216700 Glycine max HOM05D004174 ORTHO05D004624 2.0e-165 586.3 446 69.7
Lalb_Chr23g0275331 Lupinus albus HOM05D004174 ORTHO05D004624 7.7e-165 584.3 452 66.8
PSO170G6838 Papaver somniferum HOM05D004174 ORTHO05D004624 2.2e-164 582.8 410 72.2
HanXRQChr12g0368841 Helianthus annuus HOM05D004174 ORTHO05D004624 5.0e-164 581.6 394 73.1
Lsat_1_v5_gn_8_58900 Lactuca sativa HOM05D004174 ORTHO05D004624 3.2e-163 578.9 393 71.5
PSO455G0049 Papaver somniferum HOM05D004174 ORTHO05D004624 7.2e-163 577.8 410 71.7
Migut.J01169 Erythranthe guttata HOM05D004174 ORTHO05D004624 1.2e-162 577.0 388 72.7
Nitab4.5_0000106g0230 Nicotiana tabacum HOM05D004174 ORTHO05D004624 3.6e-162 575.5 419 70.4
Rhsim03G0246500 Rhododendron simsii HOM05D004174 ORTHO05D004624 1.0e-161 573.9 357 78.7
Lj1g0010752 Lotus japonicus HOM05D004174 ORTHO05D004624 1.4e-161 573.5 452 68.1
SGA_v2.0_scaffold229G43324 Striga asiatica HOM05D004174 ORTHO05D004624 6.7e-161 571.2 418 67.5
HanXRQChr03g0062501 Helianthus annuus HOM05D004174 ORTHO05D004624 8.8e-161 570.9 393 72.0
Gohir.D08G260000 Gossypium hirsutum HOM05D004174 ORTHO05D004624 1.1e-158 563.9 402 69.4
Gorai.004G277900 Gossypium raimondii HOM05D004174 ORTHO05D004624 2.4e-158 562.8 418 68.4
Lsat_1_v5_gn_7_42401 Lactuca sativa HOM05D004174 ORTHO05D004624 3.1e-158 562.4 390 70.3
HanXRQChr06g0180241 Helianthus annuus HOM05D004174 ORTHO05D004624 4.1e-158 562.0 391 71.6
arahy.Tifrunner.gnm1.ann1.SBVG8E Arachis hypogaea HOM05D004174 ORTHO05D004624 2.0e-157 559.7 410 66.6
arahy.Tifrunner.gnm1.ann1.E6UBTJ Arachis hypogaea HOM05D004174 ORTHO05D004624 1.5e-155 553.5 422 65.2
TPR.G10694 Trifolium pratense HOM05D004174 ORTHO05D004624 1.9e-155 553.1 396 68.4
Glyma.17G116600 Glycine max HOM05D004174 ORTHO05D004624 4.7e-154 548.5 422 64.9
Psat4g040360 Pisum sativum HOM05D004174 ORTHO05D004624 6.1e-154 548.1 391 69.3
Lalb_Chr08g0234871 Lupinus albus HOM05D004174 ORTHO05D004624 4.0e-153 545.4 402 68.9
AUR62033476 Chenopodium quinoa HOM05D004174 ORTHO05D004624 6.8e-153 544.7 439 65.1
MELO3C026643.2 Cucumis melo HOM05D004174 ORTHO05D004624 1.7e-151 540.0 396 67.2
Medtr4g113990 Medicago truncatula HOM05D004174 ORTHO05D004624 1.7e-151 540.0 389 68.1
GSVIVG01015501001 Vitis vinifera HOM05D004174 ORTHO05D004624 1.7e-151 540.0 306 85.3
VMungo1215G2625 Vigna mungo HOM05D004174 ORTHO05D004624 2.4e-150 536.2 389 68.1
Phvul.003G162700 Phaseolus vulgaris HOM05D004174 ORTHO05D004624 2.0e-149 533.1 389 67.6
DCAR_009201 Daucus carota HOM05D004174 ORTHO05D004624 4.5e-149 531.9 384 68.5
ATR1156G006 Amborella trichopoda HOM05D004174 ORTHO05D004624 7.7e-149 531.2 419 66.1
Dinv41532 Davidia involucrata HOM05D004174 ORTHO05D004624 3.8e-148 528.9 346 77.2
Lalb_Chr07g0178801 Lupinus albus HOM05D004174 ORTHO05D004624 1.1e-147 527.3 388 67.8
Sed0008859 Sechium edule HOM05D004174 ORTHO05D004624 3.7e-143 512.3 383 65.0
HPP92_000685 Vanilla planifolia HOM05D004174 ORTHO05D004624 6.3e-143 511.5 388 65.2
HPP92_000661 Vanilla planifolia HOM05D004174 ORTHO05D004624 4.1e-142 508.8 398 63.8
ECA240G3275 Erigeron canadensis HOM05D004174 ORTHO05D004624 2.3e-140 503.1 330 73.3
Zm00001eb377430 Zea mays HOM05D004174 ORTHO05D004624 1.1e-139 500.7 399 64.7
CDE02G3646 Ceratophyllum demersum HOM05D004174 ORTHO05D004624 1.5e-139 500.4 388 65.7
FAN26G0665 Fragaria x ananassa HOM05D004174 ORTHO05D004624 1.4e-134 483.8 263 87.8
ClCG06G010920 Citrullus lanatus HOM05D004174 ORTHO05D004624 1.0e-132 477.6 396 59.3
Os06g0141166 Oryza sativa ssp. japonica HOM05D004174 ORTHO05D004624 1.8e-129 466.8 408 59.8
SEGI_17043 Sequoiadendron giganteum HOM05D004174 ORTHO05D004624 2.4e-126 456.4 382 61.0
Lj7A632G45 Lonicera japonica HOM05D004174 ORTHO05D004624 3.5e-117 426.0 280 75.7
Ah.02g124290 Amaranthus hybridus HOM05D004174 ORTHO05D004624 3.2e-110 402.9 250 76.0
Ah.14g080300 Amaranthus hybridus HOM05D004174 ORTHO05D004624 3.2e-110 402.9 246 76.8
Gohir.A08G239300 Gossypium hirsutum HOM05D004174 ORTHO05D004624 5.4e-110 402.1 282 71.3
Lj4g0002160 Lotus japonicus HOM05D004174 ORTHO05D004624 1.6e-106 390.6 282 69.5
AagrBONN_evm.TU.Sc2ySwM_368.699 Anthoceros agrestis HOM05D004174 ORTHO05D004624 1.6e-101 374.0 412 49.0
SEGI_09002 Sequoiadendron giganteum HOM05D004174 ORTHO05D004624 3.5e-93 346.3 274 59.1
Mapoly0103s0044 Marchantia polymorpha HOM05D004174 ORTHO05D004624 3.0e-92 343.2 432 45.6
Lj4A460T58 Lonicera japonica HOM05D004174 ORTHO05D004624 1.3e-90 337.8 234 70.5
Pp3c3_2090 Physcomitrium patens HOM05D004174 ORTHO05D004624 3.1e-89 333.2 393 46.8
SMO169G0291 Selaginella moellendorffii HOM05D004174 ORTHO05D004624 1.4e-86 324.3 256 61.7
AUR62030487 Chenopodium quinoa HOM05D004174 ORTHO05D004624 3.0e-76 290.0 174 79.9
AUR62011109 Chenopodium quinoa HOM05D004174 ORTHO05D004624 1.1e-75 288.1 197 73.1
Glyma.05G008302 Glycine max HOM05D004174 ORTHO05D004624 1.8e-65 254.2 176 69.3
SEGI_03330 Sequoiadendron giganteum HOM05D004174 ORTHO05D004624 7.7e-64 248.8 278 47.5
BolC2t07007H Brassica oleracea HOM05D004174 ORTHO05D004624 4.2e-62 243.0 200 60.5
Cpa.g.sc648.3 Carica papaya HOM05D004174 ORTHO05D004624 5.5e-62 242.7 199 63.8
AUR62011090 Chenopodium quinoa HOM05D003948 ORTHO05D004610 9.1e-57 225.3 199 61.3
Ah.14g080310 Amaranthus hybridus HOM05D004174 ORTHO05D004624 7.0e-49 199.1 166 62.7
AUR62015314 Chenopodium quinoa HOM05D004174 ORTHO05D004624 2.0e-43 181.0 218 46.8
Sabra06G0122300 Salix brachista HOM05D004174 ORTHO05D004624 2.8e-42 177.2 232 47.0
Cc11_g15180 Coffea canephora HOM05D004174 ORTHO05D004624 8.2e-42 175.6 118 73.7
Cre09.g396900 Chlamydomonas reinhardtii HOM05D004174 ORTHO05D004624 7.7e-40 169.1 231 40.7
MD02G1035400 Malus domestica HOM05D004174 ORTHO05D004624 1.0e-36 158.7 82 90.2
Haze_27339 Corylus avellana HOM05D004174 ORTHO05D004624 7.0e-33 146.0 164 50.6
Cfa023976 Carpinus fangiana HOM05D003934 ORTHO05D005108 1.3e-31 141.7 379 30.1
Pp3c14_12120 Physcomitrium patens HOM05D004174 ORTHO05D004624 3.8e-31 140.2 323 33.1
SEGI_13131 Sequoiadendron giganteum HOM05D004174 ORTHO05D004624 1.5e-30 138.3 302 34.1
Lj4C460T3 Lonicera japonica HOM05D004174 ORTHO05D004624 6.8e-28 129.4 76 81.6
MCO10G159 Micromonas commoda HOM05D004174 ORTHO05D004624 2.4e-25 120.9 346 30.3
Mapoly0019s0154 Marchantia polymorpha HOM05D004174 ORTHO05D004624 2.7e-24 117.5 437 28.8
Ah.12g053390 Amaranthus hybridus HOM05D004174 ORTHO05D004624 3.8e-23 113.6 63 81.0
Ah.12g055680 Amaranthus hybridus HOM05D004174 ORTHO05D004624 1.1e-22 112.1 63 79.4
Ah.05g171270 Amaranthus hybridus HOM05D004174 ORTHO05D004624 1.9e-22 111.3 63 79.4
CBR_g46446 Chara braunii HOM05D004174 ORTHO05D004624 6.8e-20 102.8 119 48.7
PRCOL_00006603 Prasinoderma coloniale HOM05D004174 ORTHO05D004624 4.9e-18 96.7 141 36.9
VMungo0647G2130 Vigna mungo HOM05D004174 ORTHO05D004624 1.1e-17 95.5 146 39.7
Psat3g000160 Pisum sativum HOM05D004174 ORTHO05D004624 4.1e-17 93.6 119 47.9
Cre13.g582476 Chlamydomonas reinhardtii HOM05D004174 ORTHO05D004624 1.1e-14 85.5 182 33.0
SMO141G0190 Selaginella moellendorffii HOM05D004174 ORTHO05D004624 2.2e-10 71.2 190 32.1
VMungo1215G0447 Vigna mungo HOM05D006361 ORTHO05D007824 2.9e-10 70.9 67 47.8
Ah.12g053410 Amaranthus hybridus HOM05D004174 ORTHO05D004624 1.9e-09 68.2 38 78.9
BcaNung04410 Brassica carinata HOM05D005723 ORTHO05D005968 8.6e-07 59.3 190 30.0
Duzib093G0286 Durio zibethinus HOM05D005723 ORTHO05D005968 7.3e-06 56.2 151 33.1
A05p02710 Brassica napus HOM05D005723 ORTHO05D005968 9.5e-06 55.8 181 29.3


User provided reference genes

Program Settings