Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.7G235100 Prunus persica HOM05D006393 ORTHO05D008088 2.1e-158 562.4 294 100.0
MD02G1061500 Malus domestica HOM05D006393 ORTHO05D008088 4.3e-140 501.5 288 88.2
FvH4_1g04221 Fragaria vesca HOM05D006393 ORTHO05D008088 3.8e-136 488.4 288 84.4
RcHm_v2.0_Chr2g0089771 Rosa chinensis HOM05D006393 ORTHO05D008088 1.1e-135 486.9 288 85.1
Haze_25669 Corylus avellana HOM05D006393 ORTHO05D008088 7.2e-135 484.2 288 85.1
Cfa003299 Carpinus fangiana HOM05D006393 ORTHO05D008088 3.6e-134 481.9 288 85.4
CiPaw.03G236400 Carya illinoinensis HOM05D006393 ORTHO05D008088 2.3e-133 479.2 288 83.3
QL02p086364 Quercus lobata HOM05D006393 ORTHO05D008088 5.1e-133 478.0 287 82.6
Atru.chr7.1280 Acer truncatum HOM05D006393 ORTHO05D008088 9.7e-132 473.8 288 81.6
Manes.16G064200 Manihot esculenta HOM05D006393 ORTHO05D008088 1.1e-130 470.3 288 80.9
TWI34G1546 Tripterygium wilfordii HOM05D006393 ORTHO05D008088 1.6e-129 466.5 288 79.9
Ciclev10008889m.g Citrus clementina HOM05D006393 ORTHO05D008088 3.8e-128 461.8 288 80.9
Cpa.g.sc23.161 Carica papaya HOM05D006393 ORTHO05D008088 4.2e-127 458.4 288 79.2
PGR102G0276 Punica granatum HOM05D006393 ORTHO05D008088 7.2e-127 457.6 288 79.9
Thecc.09G116800 Theobroma cacao HOM05D006393 ORTHO05D008088 7.2e-127 457.6 288 78.8
Sed0023374 Sechium edule HOM05D006393 ORTHO05D008088 9.4e-127 457.2 288 77.1
Rhsim01G0090600 Rhododendron simsii HOM05D006393 ORTHO05D008088 1.2e-126 456.8 288 79.2
Potri.018G073000 Populus trichocarpa HOM05D006393 ORTHO05D008088 1.0e-125 453.8 288 78.8
CSS0031330 Camellia sinensis var. sinensis HOM05D006393 ORTHO05D008088 1.8e-125 453.0 288 78.8
GSVIVG01015453001 Vitis vinifera HOM05D006393 ORTHO05D008088 3.0e-125 452.2 288 78.5
COL.COLO4_34948 Corchorus olitorius HOM05D006393 ORTHO05D008088 5.2e-125 451.4 290 77.6
vmacro20677 Vaccinium macrocarpon HOM05D006393 ORTHO05D008088 8.8e-125 450.7 283 77.7
CsaV3_1G030940 Cucumis sativus L. HOM05D006393 ORTHO05D008088 2.0e-124 449.5 288 77.1
Actinidia09396 Actinidia chinensis HOM05D006393 ORTHO05D008088 2.6e-124 449.1 288 78.1
ClCG06G010490 Citrullus lanatus HOM05D006393 ORTHO05D008088 4.4e-124 448.4 289 78.2
FAN23G0113 Fragaria x ananassa HOM05D006393 ORTHO05D008088 4.4e-124 448.4 288 79.9
MELO3C025307.2 Cucumis melo HOM05D006393 ORTHO05D008088 1.3e-123 446.8 288 77.1
Aqoxy7G01879 Aquilegia oxysepala HOM05D006393 ORTHO05D008088 4.8e-123 444.9 287 76.0
Duzib168G1441 Durio zibethinus HOM05D006393 ORTHO05D008088 4.8e-123 444.9 288 76.7
Migut.C00826 Erythranthe guttata HOM05D006393 ORTHO05D008088 9.1e-122 440.7 288 75.3
Gohir.D06G058100 Gossypium hirsutum HOM05D006393 ORTHO05D008088 9.1e-122 440.7 288 76.4
Gorai.010G068300 Gossypium raimondii HOM05D006393 ORTHO05D008088 1.2e-121 440.3 288 76.4
Hma1.2p1_0018F.1_g013070 Hydrangea macrophylla HOM05D006393 ORTHO05D008088 2.0e-121 439.5 288 77.1
Hund09172 Selenicereus undatus HOM05D006393 ORTHO05D008088 3.5e-121 438.7 288 75.7
AT5G19930 Arabidopsis thaliana HOM05D006393 ORTHO05D008088 1.0e-120 437.2 280 78.6
Gohir.A06G059900 Gossypium hirsutum HOM05D006393 ORTHO05D008088 1.0e-120 437.2 288 75.7
Nn8g39292 Nelumbo nucifera HOM05D006393 ORTHO05D008088 1.3e-120 436.8 288 76.4
Sp6g24450 Schrenkiella parvula HOM05D006393 ORTHO05D008088 2.9e-120 435.6 280 77.5
arahy.Tifrunner.gnm1.ann1.RZM4QH Arachis hypogaea HOM05D006393 ORTHO05D008088 6.5e-120 434.5 282 77.3
CAN.G1665.6 Capsicum annuum HOM05D006393 ORTHO05D008088 6.5e-120 434.5 288 76.0
Nitab4.5_0002551g0020 Nicotiana tabacum HOM05D006393 ORTHO05D008088 8.5e-120 434.1 288 76.0
Aa31LG9G6050 Aethionema arabicum HOM05D006393 ORTHO05D008088 1.1e-119 433.7 280 76.4
AL6G31460 Arabidopsis lyrata HOM05D006393 ORTHO05D008088 1.5e-119 433.3 280 77.9
Sabra18G0063700 Salix brachista HOM05D006393 ORTHO05D008088 2.5e-119 432.6 288 76.4
Carub.0006s1830 Capsella rubella HOM05D006393 ORTHO05D008088 3.2e-119 432.2 280 76.8
arahy.Tifrunner.gnm1.ann1.3AE437 Arachis hypogaea HOM05D006393 ORTHO05D008088 4.2e-119 431.8 280 77.1
PSO782G0281 Papaver somniferum HOM05D006393 ORTHO05D008088 4.2e-119 431.8 282 77.0
BcaC04g19399 Brassica carinata HOM05D006393 ORTHO05D008088 7.2e-119 431.0 280 77.5
C09p56120 Brassica napus HOM05D006393 ORTHO05D008088 7.2e-119 431.0 280 77.5
BolC9t58479H Brassica oleracea HOM05D006393 ORTHO05D008088 7.2e-119 431.0 280 77.5
Thhalv10014278m.g Eutrema salsugineum HOM05D006393 ORTHO05D008088 9.4e-119 430.6 280 77.9
Lalb_Chr13g0302251 Lupinus albus HOM05D006393 ORTHO05D008088 9.4e-119 430.6 283 75.6
MSTRG.1197 Avicennia marina HOM05D006393 ORTHO05D008088 1.6e-118 429.9 284 75.4
BraA10t44056Z Brassica rapa HOM05D006393 ORTHO05D008088 1.6e-118 429.9 280 77.1
A10p19800 Brassica napus HOM05D006393 ORTHO05D008088 2.1e-118 429.5 280 77.1
DCAR_010438 Daucus carota HOM05D006393 ORTHO05D008088 2.1e-118 429.5 288 74.0
Solyc10g079970.2 Solanum lycopersicum HOM05D006393 ORTHO05D008088 2.1e-118 429.5 288 74.7
BcaB08g36553 Brassica carinata HOM05D006393 ORTHO05D008088 4.7e-118 428.3 280 76.1
Sopen10g030590 Solanum pennellii HOM05D006393 ORTHO05D008088 4.7e-118 428.3 288 74.7
SGA_v2.0_scaffold92G28235 Striga asiatica HOM05D006393 ORTHO05D008088 8.0e-118 427.6 288 75.3
PGSC0003DMG401029823 Solanum tuberosum HOM05D006393 ORTHO05D008088 5.2e-117 424.9 288 74.0
AUR62033415 Chenopodium quinoa HOM05D006393 ORTHO05D008088 8.8e-117 424.1 288 71.9
Lj7A639G46 Lonicera japonica HOM05D006393 ORTHO05D008088 1.7e-115 419.9 322 67.4
Psat4g042480 Pisum sativum HOM05D006393 ORTHO05D008088 4.1e-114 415.2 283 74.2
unitig_37.g13035 Utricularia gibba HOM05D006393 ORTHO05D008088 4.1e-114 415.2 288 70.8
THA.LOC104815111 Tarenaya hassleriana HOM05D006393 ORTHO05D008088 9.1e-114 414.1 284 75.4
Eucgr.C04142 Eucalyptus grandis HOM05D006393 ORTHO05D008088 3.5e-113 412.1 251 79.3
Ca_21724_v3 Cicer arietinum L. HOM05D006393 ORTHO05D008088 1.3e-112 410.2 282 72.0
HanXRQChr03g0062141 Helianthus annuus HOM05D006393 ORTHO05D008088 1.5e-111 406.8 288 70.8
VMungo1215G0586 Vigna mungo HOM05D006393 ORTHO05D008088 2.5e-111 406.0 282 72.3
MBI04_g35350_MAGBIO Magnolia biondii HOM05D006393 ORTHO05D008088 5.5e-111 404.8 249 79.5
MBI01_g13571_MAGBIO Magnolia biondii HOM05D006393 ORTHO05D008088 7.2e-111 404.4 286 72.7
TPR.G26762 Trifolium pratense HOM05D006393 ORTHO05D008088 3.6e-110 402.1 283 70.7
Phvul.003G159300 Phaseolus vulgaris HOM05D006393 ORTHO05D008088 6.1e-110 401.4 282 70.9
EL10Ac8g18557 Beta vulgaris HOM05D006393 ORTHO05D008088 8.0e-110 401.0 288 69.8
Medtr4g112990 Medicago truncatula HOM05D006393 ORTHO05D008088 1.4e-109 400.2 283 69.3
Lj4g0026371 Lotus japonicus HOM05D006393 ORTHO05D008088 2.3e-109 399.4 282 72.7
CDE06G0973 Ceratophyllum demersum HOM05D006393 ORTHO05D008088 2.0e-108 396.4 279 70.6
Glyma.17G120200 Glycine max HOM05D006393 ORTHO05D008088 1.7e-107 393.3 285 70.5
AUR62011040 Chenopodium quinoa HOM05D006393 ORTHO05D008088 2.8e-107 392.5 264 73.1
Oeu046267.2 Olea europaea HOM05D006393 ORTHO05D008088 1.6e-105 386.7 426 51.6
Os01g0507300 Oryza sativa ssp. japonica HOM05D006393 ORTHO05D008088 1.3e-104 383.6 279 68.8
Lsat_1_v5_gn_7_42880 Lactuca sativa HOM05D006393 ORTHO05D008088 2.9e-104 382.5 288 67.0
Nitab4.5_0010615g0010 Nicotiana tabacum HOM05D006393 ORTHO05D008088 6.6e-104 381.3 249 75.9
Ah.14g081310 Amaranthus hybridus HOM05D006393 ORTHO05D008088 3.3e-103 379.0 348 58.6
HPP92_008697 Vanilla planifolia HOM05D006393 ORTHO05D008088 2.1e-102 376.3 288 66.0
HPP92_009792 Vanilla planifolia HOM05D006393 ORTHO05D008088 6.1e-102 374.8 288 64.9
Zm00001eb122440 Zea mays HOM05D006393 ORTHO05D008088 1.8e-101 373.2 271 69.7
Zm00001eb106640 Zea mays HOM05D006393 ORTHO05D008088 1.5e-100 370.2 285 64.2
Cc06_g09230 Coffea canephora HOM05D006393 ORTHO05D008088 2.9e-99 365.9 236 78.0
Peaxi162Scf00223g01425 Petunia axillaris HOM05D006393 ORTHO05D008088 1.8e-98 363.2 301 65.1
Sc07g0007380 Simmondsia chinensis HOM05D006393 ORTHO05D008088 5.0e-96 355.1 236 74.2
Os01g0178200 Oryza sativa ssp. japonica HOM05D006393 ORTHO05D008088 1.9e-95 353.2 322 58.1
ATR0083G026 Amborella trichopoda HOM05D006393 ORTHO05D008088 7.3e-95 351.3 288 64.6
SEGI_37175 Sequoiadendron giganteum HOM05D006393 ORTHO05D008088 2.1e-94 349.7 288 60.8
SalBow7G4467 Salvia bowleyana HOM05D006393 ORTHO05D008088 5.2e-93 345.1 288 61.1
Dinv41564 Davidia involucrata HOM05D006752 ORTHO05D008088 3.2e-90 335.9 196 82.1
ECA240G0151 Erigeron canadensis HOM05D006393 ORTHO05D008088 1.3e-88 330.5 222 73.9
Mapoly0052s0018 Marchantia polymorpha HOM05D006393 ORTHO05D008088 1.6e-86 323.6 284 55.6
CARHR192920 Cardamine hirsuta HOM05D006393 ORTHO05D008088 2.0e-84 316.6 200 77.5
Pp3c12_24880 Physcomitrium patens HOM05D006393 ORTHO05D008088 3.5e-81 305.8 282 54.3
SMO340G0297 Selaginella moellendorffii HOM05D006393 ORTHO05D008088 6.0e-81 305.1 284 53.9
Oeu027539.2 Olea europaea HOM05D006393 ORTHO05D008088 1.3e-75 287.3 290 55.9
Peaxi162Scf00223g01424 Petunia axillaris HOM05D006393 ORTHO05D008088 1.3e-75 287.3 243 63.8
TAR636G2166 Trochodendron aralioides HOM05D006393 ORTHO05D008088 6.9e-61 238.4 143 81.8
CDE07G1479 Ceratophyllum demersum HOM05D006393 ORTHO05D008088 2.5e-55 219.9 165 63.6
PRCOL_00002470 Prasinoderma coloniale HOM05D006393 ORTHO05D008088 5.3e-53 212.2 271 44.3
Cre17.g726350 Chlamydomonas reinhardtii HOM05D006393 ORTHO05D008088 6.0e-49 198.7 319 39.2
SEGI_23420 Sequoiadendron giganteum HOM05D006393 ORTHO05D008088 8.1e-46 188.3 181 51.4
Psat6g218400 Pisum sativum HOM05D006393 ORTHO05D008088 1.0e-40 171.4 116 77.6
Eucgr.L03082 Eucalyptus grandis HOM05D006393 ORTHO05D008088 1.8e-40 170.6 130 66.2
SEGI_36873 Sequoiadendron giganteum HOM05D006393 ORTHO05D008088 1.4e-37 161.0 181 50.3
Cre02.g118200 Chlamydomonas reinhardtii HOM05D006393 ORTHO05D008088 3.1e-37 159.8 265 39.6
Glyma.05G012000 Glycine max HOM05D006393 ORTHO05D008088 1.5e-36 157.5 117 70.1
MCO12G460 Micromonas commoda HOM05D006393 ORTHO05D008088 1.7e-35 154.1 164 52.4
Psat5g214680 Pisum sativum HOM05D006393 ORTHO05D008088 7.4e-31 138.7 95 73.7
SEGI_10855 Sequoiadendron giganteum HOM05D006393 ORTHO05D008088 6.9e-29 132.1 189 42.3
Eucgr.E03680 Eucalyptus grandis HOM05D006393 ORTHO05D008088 1.5e-28 131.0 93 71.0
Zm00001eb342450 Zea mays HOM05D006393 ORTHO05D008088 2.5e-26 123.6 161 46.0
vmacro16552 Vaccinium macrocarpon HOM05D006393 ORTHO05D008088 9.1e-13 78.6 144 41.7
TAR636G3545 Trochodendron aralioides HOM05D006393 ORTHO05D008088 7.2e-10 68.9 50 66.0
SEGI_30446 Sequoiadendron giganteum HOM05D006393 ORTHO05D000979 8.0e-09 65.5 68 48.5
SEGI_14370 Sequoiadendron giganteum HOM05D006393 ORTHO05D008088 5.2e-08 62.8 58 53.4
Actinidia20331 Actinidia chinensis HOM05D006393 ORTHO05D008088 9.7e-07 58.5 34 79.4
EL10Ac4g08415 Beta vulgaris HOM05D005699 ORTHO05D007496 8.2e-06 55.5 252 25.8


User provided reference genes

Program Settings