Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.7G233100 Prunus persica HOM05D005593 ORTHO05D006515 0.0e+00 1604.3 841 100.0
MD15G1182400 Malus domestica HOM05D005593 ORTHO05D006515 7.0e-292 1007.3 832 70.0
RcHm_v2.0_Chr2g0090061 Rosa chinensis HOM05D005593 ORTHO05D006515 2.8e-248 862.4 873 61.5
FAN19G1075 Fragaria x ananassa HOM05D005593 ORTHO05D006515 6.0e-235 818.1 867 58.9
FAN23G2457 Fragaria x ananassa HOM05D005593 ORTHO05D006515 1.3e-232 810.4 866 58.8
FAN26G1119 Fragaria x ananassa HOM05D005593 ORTHO05D006515 6.2e-232 808.1 876 58.4
FAN28G0021 Fragaria x ananassa HOM05D005593 ORTHO05D006515 7.1e-220 768.1 867 56.4
Cfa003241 Carpinus fangiana HOM05D005593 ORTHO05D006515 2.6e-193 679.9 862 51.4
CiPaw.04G162900 Carya illinoinensis HOM05D005593 ORTHO05D006515 8.5e-181 638.3 860 48.6
Haze_25764 Corylus avellana HOM05D005593 ORTHO05D006515 2.4e-175 620.2 868 47.9
CiPaw.03G229900 Carya illinoinensis HOM05D005593 ORTHO05D006515 9.1e-175 618.2 977 44.0
Dinv41619 Davidia involucrata HOM05D005593 ORTHO05D006515 5.0e-173 612.5 876 46.7
QL02p044157 Quercus lobata HOM05D005593 ORTHO05D006515 8.5e-173 611.7 863 46.9
QL02p043456 Quercus lobata HOM05D005593 ORTHO05D006515 3.0e-170 603.2 825 48.5
Dinv36648 Davidia involucrata HOM05D005593 ORTHO05D006515 5.4e-167 592.4 875 45.6
Ciclev10007444m.g Citrus clementina HOM05D005593 ORTHO05D006515 1.0e-165 588.2 865 46.6
Thecc.09G108000 Theobroma cacao HOM05D005593 ORTHO05D006515 2.1e-163 580.5 861 45.1
Manes.16G114300 Manihot esculenta HOM05D005593 ORTHO05D006515 2.4e-151 540.4 894 42.6
TAR383G0262 Trochodendron aralioides HOM05D005593 ORTHO05D006515 2.7e-150 537.0 888 42.9
Cpa.g.sc23.90 Carica papaya HOM05D005593 ORTHO05D006515 1.9e-148 530.8 903 42.4
Duzib150G1551 Durio zibethinus HOM05D005593 ORTHO05D006515 1.2e-147 528.1 893 42.7
CANSAT56G2752 Cannabis sativa HOM05D005593 ORTHO05D006515 3.6e-147 526.6 897 44.5
Duzib187G0236 Durio zibethinus HOM05D005593 ORTHO05D006515 1.1e-143 515.0 922 41.0
Potri.018G082300 Populus trichocarpa HOM05D005593 ORTHO05D006515 1.4e-143 514.6 904 42.1
GSVIVG01015371001 Vitis vinifera HOM05D005593 ORTHO05D006515 9.5e-140 501.9 689 47.6
TWI63G0748 Tripterygium wilfordii HOM05D005593 ORTHO05D006515 3.1e-138 496.9 895 39.2
Sabra18G0070100 Salix brachista HOM05D005593 ORTHO05D006515 3.4e-137 493.4 877 42.6
CSS0003686 Camellia sinensis var. sinensis HOM05D005593 ORTHO05D006515 9.9e-137 491.9 976 38.9
Gorai.010G072700 Gossypium raimondii HOM05D005593 ORTHO05D006515 1.6e-134 484.6 889 40.3
Gohir.A06G063700 Gossypium hirsutum HOM05D005593 ORTHO05D006515 1.7e-133 481.1 910 39.6
Gohir.D06G062400 Gossypium hirsutum HOM05D005593 ORTHO05D006515 1.5e-132 478.0 897 39.8
Manes.03G022200 Manihot esculenta HOM05D005593 ORTHO05D006515 3.6e-131 473.4 896 40.0
Rhsim01G0100000 Rhododendron simsii HOM05D005593 ORTHO05D006515 8.1e-123 445.7 1032 36.2
Lj2g0010013 Lotus japonicus HOM05D005593 ORTHO05D006515 2.0e-121 441.0 869 41.5
arahy.Tifrunner.gnm1.ann1.F0KYD5 Arachis hypogaea HOM05D005593 ORTHO05D006515 4.4e-121 439.9 854 40.3
Glyma.07G084900 Glycine max HOM05D005593 ORTHO05D006515 4.9e-120 436.4 871 41.3
vmacro20713 Vaccinium macrocarpon HOM05D005593 ORTHO05D006515 6.4e-120 436.0 1035 35.7
Cc06_g09850 Coffea canephora HOM05D005593 ORTHO05D006515 5.4e-119 433.0 875 37.8
Psat1g043640 Pisum sativum HOM05D005593 ORTHO05D006515 5.4e-119 433.0 861 39.6
Nn2g11698 Nelumbo nucifera HOM05D005593 ORTHO05D006515 1.2e-118 431.8 895 38.5
Lalb_Chr22g0352731 Lupinus albus HOM05D005593 ORTHO05D006515 6.6e-117 426.0 863 38.7
Glyma.09G192000 Glycine max HOM05D005593 ORTHO05D006515 1.9e-116 424.5 873 40.9
Medtr6g087760 Medicago truncatula HOM05D005593 ORTHO05D006515 4.3e-116 423.3 875 38.4
Nn3g18070 Nelumbo nucifera HOM05D005593 ORTHO05D006515 4.3e-116 423.3 890 36.9
Lalb_Chr14g0371581 Lupinus albus HOM05D005593 ORTHO05D006515 1.1e-114 418.7 860 38.7
Phvul.004G165100 Phaseolus vulgaris HOM05D005593 ORTHO05D006515 3.1e-114 417.2 873 39.9
CSS0038657 Camellia sinensis var. sinensis HOM05D005593 ORTHO05D006515 4.0e-114 416.8 967 35.8
VMungo0464G1894 Vigna mungo HOM05D005593 ORTHO05D006515 2.9e-112 410.6 879 38.7
Gohir.D07G006300 Gossypium hirsutum HOM05D005593 ORTHO05D006515 3.2e-111 407.1 853 39.2
Gorai.001G005900 Gossypium raimondii HOM05D005593 ORTHO05D006515 9.3e-111 405.6 851 38.9
Oeu064588.2 Olea europaea HOM05D005593 ORTHO05D006515 9.3e-111 405.6 895 36.5
Peaxi162Scf00231g00216 Petunia axillaris HOM05D005593 ORTHO05D006515 2.1e-107 394.4 910 35.6
Nitab4.5_0000097g0120 Nicotiana tabacum HOM05D005593 ORTHO05D006515 4.8e-107 393.3 963 35.1
Ca_25537_v3 Cicer arietinum L. HOM05D005593 ORTHO05D006515 4.9e-104 383.3 868 37.6
TWI34G0806 Tripterygium wilfordii HOM05D005593 ORTHO05D006515 4.9e-104 383.3 601 44.3
TPR.G10037 Trifolium pratense HOM05D005593 ORTHO05D006515 1.4e-103 381.7 877 36.9
DCAR_012067 Daucus carota HOM05D005593 ORTHO05D006515 8.7e-101 372.5 912 35.1
ClCG06G008720 Citrullus lanatus HOM05D005593 ORTHO05D006515 1.8e-98 364.8 862 34.5
Aqoxy7G01612 Aquilegia oxysepala HOM05D005593 ORTHO05D006515 1.5e-97 361.7 894 34.1
Nitab4.5_0013892g0010 Nicotiana tabacum HOM05D005593 ORTHO05D006515 1.5e-97 361.7 970 34.1
MELO3C024628.2 Cucumis melo HOM05D005593 ORTHO05D006515 3.4e-97 360.5 850 34.0
Phvul.002G312500 Phaseolus vulgaris HOM05D005593 ORTHO05D006515 4.5e-97 360.1 856 35.4
Peaxi162Scf01363g00023 Petunia axillaris HOM05D005593 ORTHO05D006515 9.3e-95 352.4 884 33.6
Peaxi162Scf00207g01317 Petunia axillaris HOM05D005593 ORTHO05D006515 7.9e-94 349.4 887 34.3
Sed0013092 Sechium edule HOM05D005593 ORTHO05D006515 2.2e-91 341.3 854 34.3
Actinidia20382 Actinidia chinensis HOM05D005593 ORTHO05D006515 7.7e-89 332.8 784 36.7
PGR142G3553 Punica granatum HOM05D005593 ORTHO05D006515 1.9e-87 328.2 857 35.5
Sc08g0007580 Simmondsia chinensis HOM05D005593 ORTHO05D006515 3.2e-87 327.4 884 34.0
VMungo0251G1265 Vigna mungo HOM05D005593 ORTHO05D006515 7.2e-87 326.2 855 33.5
Nitab4.5_0009314g0010 Nicotiana tabacum HOM05D005593 ORTHO05D006515 1.4e-85 322.0 881 34.3
MSTRG.19579 Avicennia marina HOM05D005593 ORTHO05D006515 3.3e-84 317.4 852 34.5
PGSC0003DMG400015636 Solanum tuberosum HOM05D005593 ORTHO05D006515 5.7e-84 316.6 952 32.0
PSO832G1383 Papaver somniferum HOM05D005593 ORTHO05D006515 1.3e-83 315.5 950 32.0
Glyma.08G037800 Glycine max HOM05D005593 ORTHO05D006515 2.2e-83 314.7 844 33.8
CsaV3_1G024390 Cucumis sativus L. HOM05D005593 ORTHO05D006515 6.3e-83 313.2 826 32.8
PSO782G3244 Papaver somniferum HOM05D005593 ORTHO05D006515 4.7e-78 297.0 958 30.9
Sopen07g016890 Solanum pennellii HOM05D005593 ORTHO05D006515 2.0e-76 291.6 908 31.4
Nitab4.5_0002904g0040 Nicotiana tabacum HOM05D005593 ORTHO05D006515 4.4e-76 290.4 855 32.9
Solyc07g032710.4 Solanum lycopersicum HOM05D005593 ORTHO05D006515 9.7e-76 289.3 912 31.2
COL.COLO4_34842 Corchorus olitorius HOM05D005593 ORTHO05D006515 6.3e-75 286.6 663 34.8
EL10Ac8g18455 Beta vulgaris HOM05D005593 ORTHO05D006515 1.1e-74 285.8 924 32.5
Glyma.05G230300 Glycine max HOM05D005593 ORTHO05D006515 1.5e-73 282.0 841 32.5
ECA234G4430 Erigeron canadensis HOM05D005593 ORTHO05D006515 2.9e-72 277.7 871 32.1
PGSC0003DMG400000308 Solanum tuberosum HOM05D005593 ORTHO05D006515 7.2e-71 273.1 856 32.1
Sopen12g003130 Solanum pennellii HOM05D005593 ORTHO05D006515 9.4e-71 272.7 855 31.5
ClCG11G002410 Citrullus lanatus HOM05D005593 ORTHO05D006515 8.0e-70 269.6 890 32.8
CsaV3_2G002210 Cucumis sativus L. HOM05D005593 ORTHO05D006515 1.8e-69 268.5 855 32.6
SalBow6G5362 Salvia bowleyana HOM05D005593 ORTHO05D006515 2.3e-69 268.1 858 32.3
Dinv11466 Davidia involucrata HOM05D005593 ORTHO05D006515 3.9e-69 267.3 301 55.5
HanXRQChr12g0355541 Helianthus annuus HOM05D000246 ORTHO05D008363 2.2e-67 261.5 853 30.4
AUR62010967 Chenopodium quinoa HOM05D005593 ORTHO05D006515 9.1e-66 256.1 931 30.3
Solyc12g007140.3 Solanum lycopersicum HOM05D005593 ORTHO05D006515 1.3e-64 252.3 742 32.9
Gohir.A07G005700 Gossypium hirsutum HOM05D005593 ORTHO05D006515 2.5e-63 248.1 578 36.7
MELO3C004562.2 Cucumis melo HOM05D005593 ORTHO05D006515 3.2e-63 247.7 853 32.5
AUR62021477 Chenopodium quinoa HOM05D005593 ORTHO05D006515 3.6e-62 244.2 921 29.2
Lsat_1_v5_gn_5_103481 Lactuca sativa HOM05D005593 ORTHO05D006515 2.3e-61 241.5 856 29.6
Ah.14g082180 Amaranthus hybridus HOM05D005593 ORTHO05D006515 1.1e-58 232.6 875 29.6
arahy.Tifrunner.gnm1.ann1.31F9U3 Arachis hypogaea HOM05D005593 ORTHO05D006515 5.9e-57 226.9 488 39.3
MBI04_g19171_MAGBIO Magnolia biondii HOM05D005593 ORTHO05D006515 1.3e-56 225.7 1070 26.4
Hund09560 Selenicereus undatus HOM05D005593 ORTHO05D006515 7.2e-55 219.9 932 29.6
THA.LOC104804597 Tarenaya hassleriana HOM05D005593 ORTHO05D006515 2.7e-54 218.0 864 30.4
DCAR_028703 Daucus carota HOM05D005593 ORTHO05D006515 1.4e-50 205.7 736 30.0
Ah.09g231030 Amaranthus hybridus HOM05D005593 ORTHO05D006515 3.5e-49 201.1 874 28.8
Hund09124 Selenicereus undatus HOM05D005593 ORTHO05D006515 1.0e-48 199.5 929 28.0
Sed0018005 Sechium edule HOM05D005593 ORTHO05D006515 1.7e-48 198.7 683 31.8
Aa31sc586G30 Aethionema arabicum HOM05D005593 ORTHO05D006515 6.6e-48 196.8 850 27.6
Carub.0003s2504 Capsella rubella HOM05D005593 ORTHO05D006515 5.2e-45 187.2 865 27.1
Sed0026051 Sechium edule HOM05D005593 ORTHO05D006515 8.9e-45 186.4 600 30.8
A07p07590 Brassica napus HOM05D005593 ORTHO05D006515 2.8e-43 181.4 864 29.3
Rhsim01G0099800 Rhododendron simsii HOM05D005593 ORTHO05D006515 8.3e-43 179.9 404 39.6
BraA07t28551Z Brassica rapa HOM05D005593 ORTHO05D006515 1.4e-42 179.1 864 29.2
Sp3g22410 Schrenkiella parvula HOM05D005593 ORTHO05D006515 3.9e-40 171.0 860 26.3
Lj7E653T1 Lonicera japonica HOM05D005593 ORTHO05D006515 8.6e-40 169.9 154 61.7
Rhsim01G0098000 Rhododendron simsii HOM05D005593 ORTHO05D006515 3.6e-38 164.5 154 60.4
C07p11350 Brassica napus HOM05D005593 ORTHO05D006515 8.0e-38 163.3 861 27.9
AL3G40252 Arabidopsis lyrata HOM05D005593 ORTHO05D006515 1.0e-37 162.9 857 26.1
BcaC06g35744 Brassica carinata HOM05D005593 ORTHO05D006515 1.0e-37 162.9 858 27.4
CARHR100960 Cardamine hirsuta HOM05D005593 ORTHO05D006515 6.8e-37 160.2 857 26.7
BolC7t41613H Brassica oleracea HOM05D005593 ORTHO05D006515 7.5e-36 156.8 858 27.0
AT3G24630 Arabidopsis thaliana HOM05D005593 ORTHO05D006515 9.8e-36 156.4 853 26.6
BcaB06g26676 Brassica carinata HOM05D005593 ORTHO05D006515 2.2e-35 155.2 860 26.2
Rhsim01G0099500 Rhododendron simsii HOM05D005593 ORTHO05D006515 1.6e-33 149.1 552 28.1
Thhalv10002425m.g Eutrema salsugineum HOM05D005593 ORTHO05D006515 1.3e-32 146.0 866 26.1
Eucgr.C01030 Eucalyptus grandis HOM05D005593 ORTHO05D006515 2.3e-32 145.2 159 46.5
TWI34G0072 Tripterygium wilfordii HOM05D005593 ORTHO05D006515 2.3e-32 145.2 211 39.8
BolC7t41614H Brassica oleracea HOM05D005593 ORTHO05D006515 5.2e-29 134.0 327 35.5
HPP92_023948 Vanilla planifolia HOM05D005593 ORTHO05D006515 1.0e-24 119.8 765 23.8
ATR0315G161 Amborella trichopoda HOM05D005593 ORTHO05D006515 1.8e-21 109.0 958 24.2
CSS0008305 Camellia sinensis var. sinensis HOM05D005593 ORTHO05D006515 5.8e-20 104.0 209 34.4
HPP92_023915 Vanilla planifolia HOM05D005593 ORTHO05D006515 1.6e-17 95.9 309 30.4
MD02G1039400 Malus domestica HOM05D049677 ORTHO05D006515 2.3e-16 92.0 77 71.4
Cfa005599 Carpinus fangiana HOM05D005593 ORTHO05D006515 3.1e-13 81.6 55 72.7
Nitab4.5_0000110g0630 Nicotiana tabacum HOM05D006788 ORTHO05D008265 3.4e-12 78.2 879 23.8
Manes.18G027700 Manihot esculenta HOM05D006788 ORTHO05D008265 4.4e-12 77.8 271 32.5
CSS0004157 Camellia sinensis var. sinensis HOM05D006788 ORTHO05D008265 9.9e-12 76.6 256 30.5
CSS0005112 Camellia sinensis var. sinensis HOM05D006788 ORTHO05D008265 9.9e-12 76.6 256 30.5
Solyc04g080270.4 Solanum lycopersicum HOM05D006788 ORTHO05D008265 2.9e-11 75.1 908 23.7
ATR0733G187 Amborella trichopoda HOM05D006788 ORTHO05D008265 3.8e-11 74.7 386 27.5
HPP92_023926 Vanilla planifolia HOM05D005593 ORTHO05D006515 3.8e-11 74.7 125 40.0
Dinv39415 Davidia involucrata HOM05D006788 ORTHO05D008265 4.9e-11 74.3 230 33.0
Nitab4.5_0009150g0020 Nicotiana tabacum HOM05D006788 ORTHO05D008265 1.1e-10 73.2 919 23.7
Atru.chr13.488 Acer truncatum HOM05D006788 ORTHO05D008265 2.4e-10 72.0 293 29.7
Lj4A785T32 Lonicera japonica HOM05D006788 ORTHO05D008265 2.4e-10 72.0 902 23.9
Sopen04g033860 Solanum pennellii HOM05D006788 ORTHO05D008265 2.4e-10 72.0 910 23.0
CDE02G1606 Ceratophyllum demersum HOM05D005593 ORTHO05D006515 4.2e-10 71.2 227 26.0
Prupe.1G380200 Prunus persica HOM05D006788 ORTHO05D008265 5.4e-10 70.9 887 24.4
PGSC0003DMG400005137 Solanum tuberosum HOM05D006788 ORTHO05D008265 1.2e-09 69.7 916 23.1
Lsat_1_v5_gn_5_29160 Lactuca sativa HOM05D006788 ORTHO05D008265 2.7e-09 68.6 773 22.8
Nn5g29585 Nelumbo nucifera HOM05D006788 ORTHO05D008265 2.7e-09 68.6 903 21.6
SGA_v2.0_scaffold326G48711 Striga asiatica HOM05D006788 ORTHO05D008265 4.6e-09 67.8 871 21.9
Migut.N00496 Erythranthe guttata HOM05D006788 ORTHO05D008265 6.0e-09 67.4 780 22.8
MD08G1035200 Malus domestica HOM05D006788 ORTHO05D008265 6.0e-09 67.4 856 23.0
Potri.002G261700 Populus trichocarpa HOM05D006788 ORTHO05D008265 7.8e-09 67.0 955 21.7
PSO700G0053 Papaver somniferum HOM05D006788 ORTHO05D008265 1.3e-08 66.2 911 23.5
Ciclev10018661m.g Citrus clementina HOM05D006788 ORTHO05D008265 1.7e-08 65.9 871 23.1
Duzib093G0366 Durio zibethinus HOM05D006788 ORTHO05D008265 2.3e-08 65.5 207 31.9
Potri.014G185300 Populus trichocarpa HOM05D006788 ORTHO05D008265 3.9e-08 64.7 933 21.9
Sabra14G0142000 Salix brachista HOM05D006788 ORTHO05D008265 3.9e-08 64.7 911 21.4
Lalb_Chr16g0388151 Lupinus albus HOM05D005593 ORTHO05D006515 5.1e-08 64.3 226 31.9
Thecc.08G025800 Theobroma cacao HOM05D006788 ORTHO05D008265 5.1e-08 64.3 218 31.2
MBI16_g34334_MAGBIO Magnolia biondii HOM05D006788 ORTHO05D008265 6.6e-08 63.9 1021 22.0
Hma1.2p1_0203F.1_g086400 Hydrangea macrophylla HOM05D006788 ORTHO05D008265 8.7e-08 63.5 905 24.5
Dinv36075 Davidia involucrata HOM05D006788 ORTHO05D008265 1.1e-07 63.2 937 22.8
Manes.05G160500 Manihot esculenta HOM05D006788 ORTHO05D008265 1.5e-07 62.8 929 21.9
DCAR_008759 Daucus carota HOM05D006788 ORTHO05D008265 1.9e-07 62.4 881 22.5
FvH4_2g39870 Fragaria vesca HOM05D006788 ORTHO05D008265 1.9e-07 62.4 851 23.4
Glyma.05G248700 Glycine max HOM05D006788 ORTHO05D008265 1.9e-07 62.4 238 30.7
MELO3C003844.2 Cucumis melo HOM05D006788 ORTHO05D008265 2.5e-07 62.0 305 28.2
MD15G1031800 Malus domestica HOM05D006788 ORTHO05D008265 3.3e-07 61.6 824 22.3
Aqoxy5G01647 Aquilegia oxysepala HOM05D006788 ORTHO05D008265 4.3e-07 61.2 493 26.0
AUR62007432 Chenopodium quinoa HOM05D006788 ORTHO05D008265 7.3e-07 60.5 197 31.5
FAN20G0511 Fragaria x ananassa HOM05D006788 ORTHO05D008265 7.3e-07 60.5 851 23.5
PSO081G0175 Papaver somniferum HOM05D006788 ORTHO05D008265 7.3e-07 60.5 959 22.5
Phvul.002G333000 Phaseolus vulgaris HOM05D006788 ORTHO05D008265 7.3e-07 60.5 281 27.0
Glyma.08G057300 Glycine max HOM05D006788 ORTHO05D008265 1.3e-06 59.7 233 29.2
Peaxi162Scf00417g01019 Petunia axillaris HOM05D006788 ORTHO05D008265 1.3e-06 59.7 951 23.4
VMungo0251G0495 Vigna mungo HOM05D006788 ORTHO05D008265 1.3e-06 59.7 295 25.1
RcHm_v2.0_Chr5g0052261 Rosa chinensis HOM05D006788 ORTHO05D008265 2.1e-06 58.9 869 22.4
AL8G18450 Arabidopsis lyrata HOM05D006788 ORTHO05D008265 4.8e-06 57.8 768 21.1
ClCG05G019050 Citrullus lanatus HOM05D006788 ORTHO05D008265 4.8e-06 57.8 936 23.5
Psat7g000480 Pisum sativum HOM05D006788 ORTHO05D008265 4.8e-06 57.8 61 52.5
FAN27G2706 Fragaria x ananassa HOM05D006788 ORTHO05D008265 8.1e-06 57.0 827 23.6
Gohir.A06G010500 Gossypium hirsutum HOM05D006788 ORTHO05D008265 8.1e-06 57.0 990 22.9


User provided reference genes

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