Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.7G230800 Prunus persica HOM05D005853 ORTHO05D007308 1.1e-45 186.8 140 100.0
MD02G1047200 Malus domestica HOM05D005853 ORTHO05D007308 4.2e-32 141.7 141 84.4
RcHm_v2.0_Chr2g0090481 Rosa chinensis HOM05D005853 ORTHO05D007308 2.2e-25 119.4 138 79.7
Thecc.09G110800 Theobroma cacao HOM05D005853 ORTHO05D007308 2.2e-17 92.8 45 93.3
Gohir.A05G022800 Gossypium hirsutum HOM05D005853 ORTHO05D007308 2.9e-17 92.4 43 95.3
Manes.03G020200 Manihot esculenta HOM05D005853 ORTHO05D007308 3.8e-17 92.0 52 82.7
CSS0027693 Camellia sinensis var. sinensis HOM05D005853 ORTHO05D007308 6.5e-17 91.3 46 87.0
Gohir.A05G022900 Gossypium hirsutum HOM05D005853 ORTHO05D007308 8.4e-17 90.9 43 93.0
Gohir.D05G024300 Gossypium hirsutum HOM05D005853 ORTHO05D007308 8.4e-17 90.9 43 93.0
Gorai.009G024400 Gossypium raimondii HOM05D005853 ORTHO05D007308 8.4e-17 90.9 43 93.0
Gorai.009G024500 Gossypium raimondii HOM05D005853 ORTHO05D007308 8.4e-17 90.9 43 93.0
HanXRQChr09g0239771 Helianthus annuus HOM05D005853 ORTHO05D007308 1.1e-16 90.5 66 68.2
Manes.16G116400 Manihot esculenta HOM05D005853 ORTHO05D007308 1.1e-16 90.5 47 87.2
Ah.01g021430 Amaranthus hybridus HOM05D005853 ORTHO05D007308 1.4e-16 90.1 45 88.9
Gohir.D05G024400 Gossypium hirsutum HOM05D005853 ORTHO05D007308 1.4e-16 90.1 42 95.2
TAR636G2025 Trochodendron aralioides HOM05D005853 ORTHO05D007308 1.4e-16 90.1 43 90.7
FvH4_1g04830 Fragaria vesca HOM05D000050 ORTHO05D009634 2.5e-16 89.4 96 88.5
FAN26G1381 Fragaria x ananassa HOM05D000050 ORTHO05D009634 2.5e-16 89.4 96 88.5
Cpa.g.sc23.111 Carica papaya HOM05D005853 ORTHO05D007308 4.2e-16 88.6 46 84.8
Duzib187G1793 Durio zibethinus HOM05D005853 ORTHO05D007308 4.2e-16 88.6 45 86.7
FAN19G0481 Fragaria x ananassa HOM05D000050 ORTHO05D009634 5.5e-16 88.2 49 87.8
PGR102G0312 Punica granatum HOM05D005853 ORTHO05D007308 5.5e-16 88.2 42 90.5
CiPaw.04G164300 Carya illinoinensis HOM05D005853 ORTHO05D007308 7.1e-16 87.8 57 75.4
ECA240G1876 Erigeron canadensis HOM05D005853 ORTHO05D007308 7.1e-16 87.8 90 52.2
Gohir.D06G060700 Gossypium hirsutum HOM05D005853 ORTHO05D007308 7.1e-16 87.8 47 89.4
Gorai.010G070700 Gossypium raimondii HOM05D005853 ORTHO05D007308 7.1e-16 87.8 47 89.4
QL02p085450 Quercus lobata HOM05D005853 ORTHO05D007308 9.3e-16 87.4 56 78.6
MBI13_g01620_MAGBIO Magnolia biondii HOM05D005853 ORTHO05D007308 1.2e-15 87.0 97 56.7
COL.COLO4_34918 Corchorus olitorius HOM05D005853 ORTHO05D007308 1.6e-15 86.7 44 84.1
CSS0003127 Camellia sinensis var. sinensis HOM05D005853 ORTHO05D007308 2.1e-15 86.3 47 87.2
CSS0011641 Camellia sinensis var. sinensis HOM05D005853 ORTHO05D007308 2.1e-15 86.3 47 87.2
Lsat_1_v5_gn_7_40661 Lactuca sativa HOM05D005853 ORTHO05D007308 2.1e-15 86.3 93 53.8
Haze_25712 Corylus avellana HOM05D005853 ORTHO05D007308 2.7e-15 85.9 47 85.1
Gohir.A06G062400 Gossypium hirsutum HOM05D005853 ORTHO05D007308 2.7e-15 85.9 47 87.2
Dinv41601 Davidia involucrata HOM05D005853 ORTHO05D007308 3.5e-15 85.5 48 81.2
Migut.I00880 Erythranthe guttata HOM05D005853 ORTHO05D007308 3.5e-15 85.5 47 80.9
Gohir.A08G241100 Gossypium hirsutum HOM05D005853 ORTHO05D007308 3.5e-15 85.5 45 82.2
Eucgr.J02982 Eucalyptus grandis HOM05D005853 ORTHO05D007308 4.6e-15 85.1 70 61.4
Carub.0003s3118 Capsella rubella HOM05D005853 ORTHO05D007308 6.0e-15 84.7 48 85.4
ClCG06G008520 Citrullus lanatus HOM05D005853 ORTHO05D007308 6.0e-15 84.7 45 91.1
Nn2g11754 Nelumbo nucifera HOM05D005853 ORTHO05D007308 6.0e-15 84.7 43 88.4
TAR624G1380 Trochodendron aralioides HOM05D005853 ORTHO05D007308 6.0e-15 84.7 45 84.4
ATR0724G055 Amborella trichopoda HOM05D005853 ORTHO05D007308 7.9e-15 84.3 47 78.7
AT2G17240 Arabidopsis thaliana HOM05D005853 ORTHO05D007308 7.9e-15 84.3 48 85.4
CDE07G2010 Ceratophyllum demersum HOM05D005853 ORTHO05D007308 7.9e-15 84.3 43 79.1
Thecc.06G089900 Theobroma cacao HOM05D005853 ORTHO05D007308 7.9e-15 84.3 47 78.7
Aa31LG8G14610 Aethionema arabicum HOM05D005853 ORTHO05D007308 1.0e-14 84.0 46 82.6
BcaB03g16471 Brassica carinata HOM05D005853 ORTHO05D007308 1.0e-14 84.0 47 85.1
BcaC01g02942 Brassica carinata HOM05D005853 ORTHO05D007308 1.0e-14 84.0 59 72.9
BcaC06g36242 Brassica carinata HOM05D005853 ORTHO05D007308 1.0e-14 84.0 42 88.1
A07p03810 Brassica napus HOM05D005853 ORTHO05D007308 1.0e-14 84.0 42 88.1
C03p58060 Brassica napus HOM05D005853 ORTHO05D007308 1.0e-14 84.0 59 72.9
C07p06090 Brassica napus HOM05D005853 ORTHO05D007308 1.0e-14 84.0 42 88.1
BolC3t18080H Brassica oleracea HOM05D005853 ORTHO05D007308 1.0e-14 84.0 59 72.9
BolC7t41022H Brassica oleracea HOM05D005853 ORTHO05D007308 1.0e-14 84.0 42 88.1
BraA07t28175Z Brassica rapa HOM05D005853 ORTHO05D007308 1.0e-14 84.0 42 88.1
A06p34130 Brassica napus HOM05D005853 ORTHO05D007308 1.3e-14 83.6 40 92.5
BraA06t26346Z Brassica rapa HOM05D005853 ORTHO05D007308 1.3e-14 83.6 40 92.5
Lsat_1_v5_gn_8_95440 Lactuca sativa HOM05D005853 ORTHO05D007308 1.3e-14 83.6 44 84.1
CDE04G2734 Ceratophyllum demersum HOM05D005853 ORTHO05D007308 1.8e-14 83.2 39 87.2
Nitab4.5_0000129g0220 Nicotiana tabacum HOM05D005853 ORTHO05D007308 1.8e-14 83.2 63 66.7
Nitab4.5_0001983g0030 Nicotiana tabacum HOM05D005853 ORTHO05D007308 1.8e-14 83.2 63 66.7
PGR102G2925 Punica granatum HOM05D005853 ORTHO05D007308 1.8e-14 83.2 47 78.7
AT3G24506 Arabidopsis thaliana HOM05D005853 ORTHO05D007308 2.3e-14 82.8 47 83.0
Potri.018G079700 Populus trichocarpa HOM05D005853 ORTHO05D007308 2.3e-14 82.8 46 80.4
THA.LOC104808760 Tarenaya hassleriana HOM05D005853 ORTHO05D007308 2.3e-14 82.8 59 71.2
AL3G39990 Arabidopsis lyrata HOM05D005853 ORTHO05D007308 3.0e-14 82.4 42 85.7
Carub.0003s2483 Capsella rubella HOM05D005853 ORTHO05D007308 3.0e-14 82.4 47 83.0
AL3G50100 Arabidopsis lyrata HOM05D005853 ORTHO05D007308 3.9e-14 82.0 48 83.3
Cc04_g03260 Coffea canephora HOM05D005853 ORTHO05D007308 3.9e-14 82.0 43 86.0
Phvul.010G149900 Phaseolus vulgaris HOM05D005853 ORTHO05D007308 3.9e-14 82.0 45 86.7
TWI34G0492 Tripterygium wilfordii HOM05D005853 ORTHO05D007308 3.9e-14 82.0 47 80.9
Zm00001eb247070 Zea mays HOM05D005853 ORTHO05D007308 3.9e-14 82.0 86 51.2
Sp3g30580 Schrenkiella parvula HOM05D005853 ORTHO05D007308 5.1e-14 81.6 46 80.4
Atru.chr7.1347 Acer truncatum HOM05D005853 ORTHO05D007308 6.7e-14 81.3 38 94.7
MSTRG.22678 Avicennia marina HOM05D005853 ORTHO05D007308 6.7e-14 81.3 47 76.6
Duzib150G0727 Durio zibethinus HOM05D005853 ORTHO05D007308 6.7e-14 81.3 39 89.7
Glyma.07G005500 Glycine max HOM05D005853 ORTHO05D007308 6.7e-14 81.3 42 85.7
Glyma.08G205900 Glycine max HOM05D005853 ORTHO05D007308 6.7e-14 81.3 42 85.7
Oeu033499.2 Olea europaea HOM05D005853 ORTHO05D007308 6.7e-14 81.3 43 81.4
Peaxi162Scf00329g00432 Petunia axillaris HOM05D005853 ORTHO05D007308 6.7e-14 81.3 46 78.3
THA.LOC104804586 Tarenaya hassleriana HOM05D005853 ORTHO05D007308 6.7e-14 81.3 43 83.7
BcaB08g34716 Brassica carinata HOM05D005853 ORTHO05D007308 8.7e-14 80.9 46 78.3
Lalb_Chr22g0351311 Lupinus albus HOM05D005853 ORTHO05D007308 8.7e-14 80.9 49 77.6
Medtr4g012810 Medicago truncatula HOM05D005853 ORTHO05D007308 8.7e-14 80.9 49 77.6
Os02g0614200 Oryza sativa ssp. japonica HOM05D005853 ORTHO05D007308 8.7e-14 80.9 48 79.2
CiPaw.03G232300 Carya illinoinensis HOM05D005853 ORTHO05D007308 1.5e-13 80.1 36 97.2
PSO210G7285 Papaver somniferum HOM05D005853 ORTHO05D007308 1.5e-13 80.1 39 87.2
Sc12g0009330 Simmondsia chinensis HOM05D005853 ORTHO05D007308 1.5e-13 80.1 40 85.0
Hma1.2p1_1455F.1_g284500 Hydrangea macrophylla HOM05D005853 ORTHO05D007308 2.5e-13 79.3 46 78.3
PSO210G6545 Papaver somniferum HOM05D005853 ORTHO05D007308 2.5e-13 79.3 39 84.6
Ciclev10009718m.g Citrus clementina HOM05D005853 ORTHO05D007308 3.3e-13 79.0 42 83.3
MSTRG.11072 Avicennia marina HOM05D005853 ORTHO05D007308 4.3e-13 78.6 46 78.3
Solyc04g008710.4 Solanum lycopersicum HOM05D005853 ORTHO05D007308 4.3e-13 78.6 47 76.6
Sopen04g003890 Solanum pennellii HOM05D005853 ORTHO05D007308 4.3e-13 78.6 47 76.6
Zm00001eb184630 Zea mays HOM05D005853 ORTHO05D007308 4.3e-13 78.6 47 76.6
Sed0019935 Sechium edule HOM05D005853 ORTHO05D007308 5.7e-13 78.2 45 82.2
VMungo0331G1451 Vigna mungo HOM05D005853 ORTHO05D007308 5.7e-13 78.2 39 87.2
Lj3g0010943 Lotus japonicus HOM05D005853 ORTHO05D007308 7.4e-13 77.8 38 89.5
GSVIVG01015393001 Vitis vinifera HOM05D005853 ORTHO05D007308 7.4e-13 77.8 36 94.4
Prupe.3G069800 Prunus persica HOM05D005853 ORTHO05D007308 9.6e-13 77.4 42 83.3
Sed0009205 Sechium edule HOM05D005853 ORTHO05D007308 9.6e-13 77.4 35 97.1
unitig_22.g5469 Utricularia gibba HOM05D005853 ORTHO05D007308 1.3e-12 77.0 41 80.5
GSVIVG01017090001 Vitis vinifera HOM05D005853 ORTHO05D007308 1.3e-12 77.0 36 91.7
CsaV3_1G030480 Cucumis sativus L. HOM05D005853 ORTHO05D007308 1.6e-12 76.6 42 83.3
CANSAT56G2684 Cannabis sativa HOM05D005853 ORTHO05D007308 2.1e-12 76.3 46 78.3
DCAR_028712 Daucus carota HOM05D005181 ORTHO05D006086 2.8e-12 75.9 44 77.3
SalBow2G1576 Salvia bowleyana HOM05D005853 ORTHO05D007308 3.7e-12 75.5 44 75.0
Thhalv10022893m.g Eutrema salsugineum HOM05D005853 ORTHO05D007308 4.8e-12 75.1 46 78.3
MD09G1211800 Malus domestica HOM05D005853 ORTHO05D007308 6.3e-12 74.7 84 53.6
Psat7g250480 Pisum sativum HOM05D005853 ORTHO05D007308 8.2e-12 74.3 71 54.9
SGA_v2.0_scaffold5G02572 Striga asiatica HOM05D005853 ORTHO05D007308 1.1e-11 73.9 47 68.1
MELO3C025336.2 Cucumis melo HOM05D005853 ORTHO05D007308 1.8e-11 73.2 63 61.9
Pp3c1_36270 Physcomitrium patens HOM05D005853 ORTHO05D007308 1.8e-11 73.2 36 86.1
Pp3c2_3480 Physcomitrium patens HOM05D005853 ORTHO05D007308 1.8e-11 73.2 36 86.1
FvH4_6g31380 Fragaria vesca HOM05D005853 ORTHO05D007308 2.4e-11 72.8 43 81.4
RcHm_v2.0_Chr2g0138141 Rosa chinensis HOM05D005853 ORTHO05D007308 2.4e-11 72.8 43 81.4
SMO347G0073 Selaginella moellendorffii HOM05D005853 ORTHO05D007308 3.1e-11 72.4 35 85.7
Aqoxy7G03791 Aquilegia oxysepala HOM05D005853 ORTHO05D007308 4.1e-11 72.0 88 46.6
SEGI_01601 Sequoiadendron giganteum HOM05D005853 ORTHO05D007308 6.9e-11 71.2 45 71.1
PGSC0003DMG400025300 Solanum tuberosum HOM05D005853 ORTHO05D007308 6.9e-11 71.2 39 79.5
arahy.Tifrunner.gnm1.ann1.84WEKL Arachis hypogaea HOM05D005853 ORTHO05D007308 9.0e-11 70.9 71 52.1
arahy.Tifrunner.gnm1.ann1.JCT5CV Arachis hypogaea HOM05D005853 ORTHO05D007308 9.0e-11 70.9 71 52.1
Mapoly0029s0025 Marchantia polymorpha HOM05D005853 ORTHO05D007308 1.2e-10 70.5 35 80.0
CBR_g48216 Chara braunii HOM05D005853 ORTHO05D007308 2.6e-10 69.3 51 60.8
TPR.G17682 Trifolium pratense HOM05D005853 ORTHO05D007308 2.6e-10 69.3 43 74.4
Oeu024066.2 Olea europaea HOM05D005853 ORTHO05D007308 7.9e-07 57.8 100 36.0


User provided reference genes

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