Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.7G229700 Prunus persica HOM05D007609 ORTHO05D009539 1.6e-50 202.6 110 100.0
FAN28G0995 Fragaria x ananassa HOM05D007609 ORTHO05D009539 6.9e-14 80.9 107 55.1
FvH4_1g05030 Fragaria vesca HOM05D007609 ORTHO05D009539 4.4e-13 78.2 109 54.1
Haze_25706 Corylus avellana HOM05D007609 ORTHO05D009539 5.8e-13 77.8 114 44.7
FAN26G1953 Fragaria x ananassa HOM05D007609 ORTHO05D009539 5.8e-13 77.8 109 54.1
FAN26G2876 Fragaria x ananassa HOM05D007609 ORTHO05D009539 5.8e-13 77.8 109 54.1
RcHm_v2.0_Chr2g0090641 Rosa chinensis HOM05D007609 ORTHO05D009539 1.7e-12 76.3 111 52.3
CSS0012617 Camellia sinensis var. sinensis HOM05D007609 ORTHO05D009539 3.8e-12 75.1 97 47.4
Hma1.2p1_0018F.1_g013450 Hydrangea macrophylla HOM05D007609 ORTHO05D009539 2.1e-10 69.3 43 65.1
Lj2g0010717 Lotus japonicus HOM05D007609 ORTHO05D009539 2.7e-10 68.9 103 37.9
Sabra18G0066900 Salix brachista HOM05D007609 ORTHO05D009539 2.7e-10 68.9 104 38.5
Potri.018G078900 Populus trichocarpa HOM05D007609 ORTHO05D009539 4.6e-10 68.2 104 42.3
Cpa.g.sc451.1 Carica papaya HOM05D007609 ORTHO05D009539 6.0e-10 67.8 107 39.3
Ciclev10010038m.g Citrus clementina HOM05D007609 ORTHO05D009539 1.3e-09 66.6 107 42.1
Aqoxy7G01699 Aquilegia oxysepala HOM05D007609 ORTHO05D009539 1.7e-09 66.2 100 39.0
Atru.chr7.1339 Acer truncatum HOM05D007609 ORTHO05D009539 6.6e-09 64.3 92 41.3
Cfa003264 Carpinus fangiana HOM05D007609 ORTHO05D009539 6.6e-09 64.3 111 46.8
Gohir.A07G006801 Gossypium hirsutum HOM05D007609 ORTHO05D009539 6.6e-09 64.3 36 75.0
Gohir.D07G005100 Gossypium hirsutum HOM05D007609 ORTHO05D009539 8.7e-09 63.9 36 75.0
Gorai.001G004700 Gossypium raimondii HOM05D007609 ORTHO05D009539 8.7e-09 63.9 36 75.0
Lsat_1_v5_gn_5_101501 Lactuca sativa HOM05D007609 ORTHO05D009539 8.7e-09 63.9 35 77.1
FAN23G1574 Fragaria x ananassa HOM05D007609 ORTHO05D009539 1.1e-08 63.5 73 56.2
Thecc.09G111700 Theobroma cacao HOM05D007609 ORTHO05D009539 2.5e-08 62.4 33 75.8
vmacro18908 Vaccinium macrocarpon HOM05D007609 ORTHO05D009539 3.3e-08 62.0 30 76.7
Gohir.A06G061700 Gossypium hirsutum HOM05D007609 ORTHO05D009539 7.3e-08 60.8 36 66.7
Gorai.010G069800 Gossypium raimondii HOM05D007609 ORTHO05D009539 7.3e-08 60.8 36 66.7
Hma1.2p1_0092F.1_g046650 Hydrangea macrophylla HOM05D007609 ORTHO05D009539 9.6e-08 60.5 30 76.7
Rhsim08G0221700 Rhododendron simsii HOM05D007609 ORTHO05D009539 9.6e-08 60.5 30 73.3
Nn2g11764 Nelumbo nucifera HOM05D007609 ORTHO05D009539 1.3e-07 60.1 109 45.0
QL02p085521 Quercus lobata HOM05D007609 ORTHO05D009539 1.3e-07 60.1 92 51.1
Manes.03G019500 Manihot esculenta HOM05D007609 ORTHO05D009539 1.6e-07 59.7 38 63.2
Sc18g0001160 Simmondsia chinensis HOM05D007609 ORTHO05D009539 1.6e-07 59.7 33 72.7
Gohir.D06G060000 Gossypium hirsutum HOM05D007609 ORTHO05D009539 2.1e-07 59.3 34 67.6
HanXRQChr10g0317871 Helianthus annuus HOM05D007609 ORTHO05D009539 2.1e-07 59.3 32 71.9
Potri.006G159300 Populus trichocarpa HOM05D007609 ORTHO05D009539 3.6e-07 58.5 32 75.0
Eucgr.C03849 Eucalyptus grandis HOM05D007609 ORTHO05D009539 4.8e-07 58.2 36 69.4
TAR383G0714 Trochodendron aralioides HOM05D007609 ORTHO05D009539 4.8e-07 58.2 97 39.2
COL.COLO4_34908 Corchorus olitorius HOM05D007609 ORTHO05D009539 6.2e-07 57.8 33 72.7
Lsat_1_v5_gn_4_103641 Lactuca sativa HOM05D007609 ORTHO05D009539 6.2e-07 57.8 29 75.9
Manes.16G116800 Manihot esculenta HOM05D007609 ORTHO05D009539 6.2e-07 57.8 73 39.7
DCAR_028717 Daucus carota HOM05D007609 ORTHO05D009539 1.1e-06 57.0 26 80.8
Lalb_Chr22g0352851 Lupinus albus HOM05D007609 ORTHO05D009539 1.4e-06 56.6 34 61.8
Glyma.09G189800 Glycine max HOM05D007609 ORTHO05D009539 1.8e-06 56.2 103 35.9
TPR.G35275 Trifolium pratense HOM05D007609 ORTHO05D009539 1.8e-06 56.2 96 34.4
AUR62011005 Chenopodium quinoa HOM05D007609 ORTHO05D009539 2.4e-06 55.8 23 91.3
Dinv38045 Davidia involucrata HOM05D007609 ORTHO05D009539 2.4e-06 55.8 41 58.5
PGSC0003DMG400016536 Solanum tuberosum HOM05D007609 ORTHO05D009539 2.4e-06 55.8 37 62.2
TAR626G0143 Trochodendron aralioides HOM05D007609 ORTHO05D025968 2.4e-06 55.8 104 38.5
Gohir.A08G241000 Gossypium hirsutum HOM05D007609 ORTHO05D009539 4.0e-06 55.1 37 56.8
Gohir.D08G261700 Gossypium hirsutum HOM05D007609 ORTHO05D009539 4.0e-06 55.1 37 56.8
Gorai.004G279800 Gossypium raimondii HOM05D007609 ORTHO05D009539 4.0e-06 55.1 37 56.8
Medtr8g083460 Medicago truncatula HOM05D007609 ORTHO05D009539 4.0e-06 55.1 28 71.4
Solyc06g066700.1 Solanum lycopersicum HOM05D007609 ORTHO05D009539 4.0e-06 55.1 28 71.4
Nitab4.5_0000351g0200 Nicotiana tabacum HOM05D007609 ORTHO05D009539 5.3e-06 54.7 28 71.4
Phvul.004G162600 Phaseolus vulgaris HOM05D007609 ORTHO05D009539 5.3e-06 54.7 35 60.0
CsaV3_1G030560 Cucumis sativus L. HOM05D007609 ORTHO05D009539 6.9e-06 54.3 34 67.6
Lj4g0003308 Lotus japonicus HOM05D007609 ORTHO05D009539 6.9e-06 54.3 32 62.5
Medtr6g086445 Medicago truncatula HOM05D007609 ORTHO05D009539 6.9e-06 54.3 32 62.5
Nn8g39210 Nelumbo nucifera HOM05D007609 ORTHO05D009539 6.9e-06 54.3 97 39.2
PGSC0003DMG400005604 Solanum tuberosum HOM05D007609 ORTHO05D009539 6.9e-06 54.3 28 71.4
ATR0559G294 Amborella trichopoda HOM05D007609 ORTHO05D009539 9.0e-06 53.9 27 74.1
Sed0020512 Sechium edule HOM05D007609 ORTHO05D009539 9.0e-06 53.9 29 72.4


User provided reference genes

Program Settings