Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.7G225500 Prunus persica HOM05D006031 ORTHO05D007417 1.3e-108 396.4 198 100.0
RcHm_v2.0_Chr2g0091271 Rosa chinensis HOM05D006031 ORTHO05D007417 8.4e-87 323.9 178 90.4
MD02G1057400 Malus domestica HOM05D006031 ORTHO05D007417 1.1e-83 313.5 178 87.6
FAN26G0948 Fragaria x ananassa HOM05D006031 ORTHO05D007417 3.6e-82 308.5 178 87.1
FAN26G3395 Fragaria x ananassa HOM05D006031 ORTHO05D007417 3.6e-82 308.5 178 87.1
QL02p044744 Quercus lobata HOM05D006031 ORTHO05D007417 3.6e-82 308.5 178 85.4
FAN23G2797 Fragaria x ananassa HOM05D006031 ORTHO05D007417 4.8e-82 308.1 178 87.6
GSVIVG01015348001 Vitis vinifera HOM05D006031 ORTHO05D007417 1.1e-81 307.0 178 83.1
FvH4_1g05640 Fragaria vesca HOM05D006031 ORTHO05D007417 2.4e-81 305.8 178 87.1
Dinv41637 Davidia involucrata HOM05D006031 ORTHO05D007417 9.0e-81 303.9 178 83.1
PGR102G2811 Punica granatum HOM05D006031 ORTHO05D007417 9.0e-81 303.9 180 81.7
Actinidia20400 Actinidia chinensis HOM05D006031 ORTHO05D007417 2.6e-80 302.4 178 83.1
Thecc.09G105700 Theobroma cacao HOM05D006031 ORTHO05D007417 3.4e-80 302.0 178 82.6
CANSAT56G1289 Cannabis sativa HOM05D006031 ORTHO05D007417 1.3e-79 300.1 178 82.0
CiPaw.03G228000 Carya illinoinensis HOM05D006031 ORTHO05D007417 1.3e-79 300.1 178 83.1
Manes.03G024000 Manihot esculenta HOM05D006031 ORTHO05D007417 2.2e-79 299.3 178 82.6
TWI63G0954 Tripterygium wilfordii HOM05D006031 ORTHO05D007417 2.2e-79 299.3 178 82.0
COL.COLO4_34809 Corchorus olitorius HOM05D006031 ORTHO05D007417 2.9e-79 298.9 178 81.5
Atru.chr7.1388 Acer truncatum HOM05D006031 ORTHO05D007417 4.9e-79 298.1 178 82.0
A01p09080 Brassica napus HOM05D006031 ORTHO05D007417 8.4e-79 297.4 178 80.3
Migut.K00493 Erythranthe guttata HOM05D006031 ORTHO05D007417 8.4e-79 297.4 178 80.3
Eucgr.C03802 Eucalyptus grandis HOM05D006031 ORTHO05D007417 1.1e-78 297.0 178 80.3
Glyma.01G145300 Glycine max HOM05D006031 ORTHO05D007417 1.1e-78 297.0 178 82.0
Phvul.004G168000 Phaseolus vulgaris HOM05D006031 ORTHO05D007417 1.9e-78 296.2 178 82.0
Sabra18G0072100 Salix brachista HOM05D006031 ORTHO05D007417 1.9e-78 296.2 178 81.5
Cpa.g.sc12.30 Carica papaya HOM05D006031 ORTHO05D007417 3.2e-78 295.4 178 80.3
AUR62021455 Chenopodium quinoa HOM05D006031 ORTHO05D007417 3.2e-78 295.4 178 79.2
Hma1.2p1_0945F.1_g240050 Hydrangea macrophylla HOM05D006031 ORTHO05D007417 3.2e-78 295.4 178 80.3
BolC7t46125H Brassica oleracea HOM05D006031 ORTHO05D007417 4.2e-78 295.0 178 79.8
BcaC09g51657 Brassica carinata HOM05D006031 ORTHO05D007417 5.4e-78 294.7 178 79.8
C07p56460 Brassica napus HOM05D006031 ORTHO05D007417 5.4e-78 294.7 178 79.8
BolC1t01025H Brassica oleracea HOM05D006031 ORTHO05D007417 5.4e-78 294.7 178 79.8
BcaC06g32602 Brassica carinata HOM05D006031 ORTHO05D007417 9.3e-78 293.9 178 78.7
VMungo0464G0135 Vigna mungo HOM05D006031 ORTHO05D007417 9.3e-78 293.9 178 80.9
BraA01t00856Z Brassica rapa HOM05D006031 ORTHO05D007417 1.2e-77 293.5 178 79.2
Lalb_Chr22g0352651 Lupinus albus HOM05D006031 ORTHO05D007417 1.2e-77 293.5 178 79.8
Gorai.010G073700 Gossypium raimondii HOM05D006031 ORTHO05D007417 1.6e-77 293.1 178 79.8
Potri.018G083800 Populus trichocarpa HOM05D006031 ORTHO05D007417 1.6e-77 293.1 178 80.3
BraA03t14904Z Brassica rapa HOM05D006031 ORTHO05D007417 2.1e-77 292.7 178 78.7
ECA234G3380 Erigeron canadensis HOM05D006031 ORTHO05D007417 2.7e-77 292.4 178 79.2
C01p10630 Brassica napus HOM05D006031 ORTHO05D007417 3.5e-77 292.0 178 79.2
TAR624G0502 Trochodendron aralioides HOM05D006031 ORTHO05D007417 3.5e-77 292.0 178 80.9
Sc18g0001360 Simmondsia chinensis HOM05D006031 ORTHO05D007417 4.6e-77 291.6 178 77.0
A03p58440 Brassica napus HOM05D006031 ORTHO05D007417 6.0e-77 291.2 178 78.1
Carub.0007s1181 Capsella rubella HOM05D006031 ORTHO05D007417 7.9e-77 290.8 178 78.1
Ca_25548_v3 Cicer arietinum L. HOM05D006031 ORTHO05D007417 7.9e-77 290.8 178 80.3
Gohir.A06G064600 Gossypium hirsutum HOM05D006031 ORTHO05D007417 7.9e-77 290.8 178 79.2
Lsat_1_v5_gn_4_6541 Lactuca sativa HOM05D006031 ORTHO05D007417 7.9e-77 290.8 178 78.1
BcaNung01361 Brassica carinata HOM05D006031 ORTHO05D007417 1.0e-76 290.4 178 78.7
Gohir.D06G063200 Gossypium hirsutum HOM05D006031 ORTHO05D007417 1.0e-76 290.4 178 79.2
Sp7g26830 Schrenkiella parvula HOM05D006031 ORTHO05D007417 1.3e-76 290.0 178 78.1
Thhalv10026253m.g Eutrema salsugineum HOM05D006031 ORTHO05D007417 1.7e-76 289.7 178 78.1
AT4G28830 Arabidopsis thaliana HOM05D006031 ORTHO05D007417 2.3e-76 289.3 178 78.1
CAN.G478.5 Capsicum annuum HOM05D006031 ORTHO05D007417 3.9e-76 288.5 178 78.7
AL7G23660 Arabidopsis lyrata HOM05D006031 ORTHO05D007417 5.1e-76 288.1 178 78.1
arahy.Tifrunner.gnm1.ann1.P4D2XC Arachis hypogaea HOM05D006031 ORTHO05D007417 8.7e-76 287.3 178 78.1
arahy.Tifrunner.gnm1.ann1.4UU729 Arachis hypogaea HOM05D006031 ORTHO05D007417 1.5e-75 286.6 178 77.5
Cc06_g10050 Coffea canephora HOM05D006031 ORTHO05D007417 1.5e-75 286.6 178 76.4
THA.LOC104804018 Tarenaya hassleriana HOM05D006031 ORTHO05D007417 1.9e-75 286.2 178 78.1
Aa31LG2G21560 Aethionema arabicum HOM05D006031 ORTHO05D007417 2.5e-75 285.8 178 75.3
MBI04_g14932_MAGBIO Magnolia biondii HOM05D006031 ORTHO05D007417 2.5e-75 285.8 178 77.5
Medtr1g035260 Medicago truncatula HOM05D006031 ORTHO05D007417 3.3e-75 285.4 178 79.2
Nn2g11655 Nelumbo nucifera HOM05D006031 ORTHO05D007417 4.3e-75 285.0 178 78.7
Ciclev10009448m.g Citrus clementina HOM05D006031 ORTHO05D007417 5.6e-75 284.6 181 79.0
AUR62010942 Chenopodium quinoa HOM05D006031 ORTHO05D007417 9.6e-75 283.9 174 77.6
TPR.G34905 Trifolium pratense HOM05D006031 ORTHO05D007417 9.6e-75 283.9 178 78.7
EL10Ac8g18430 Beta vulgaris HOM05D006031 ORTHO05D007417 1.3e-74 283.5 178 76.4
HanXRQChr17g0570151 Helianthus annuus HOM05D006031 ORTHO05D007417 1.3e-74 283.5 178 77.0
MELO3C004569.2 Cucumis melo HOM05D006031 ORTHO05D007417 2.1e-74 282.7 178 77.5
PSO566G0179 Papaver somniferum HOM05D006031 ORTHO05D007417 2.1e-74 282.7 178 75.3
Nitab4.5_0000010g0020 Nicotiana tabacum HOM05D006031 ORTHO05D007417 2.8e-74 282.3 178 77.0
Hund26230 Selenicereus undatus HOM05D006031 ORTHO05D007417 2.8e-74 282.3 178 75.8
Aqoxy7G01527 Aquilegia oxysepala HOM05D006031 ORTHO05D007417 6.2e-74 281.2 178 77.5
Solyc12g006030.2 Solanum lycopersicum HOM05D006031 ORTHO05D007417 6.2e-74 281.2 178 77.5
PSO782G0755 Papaver somniferum HOM05D006031 ORTHO05D007417 1.1e-73 280.4 178 74.7
Nitab4.5_0000952g0030 Nicotiana tabacum HOM05D006031 ORTHO05D007417 1.4e-73 280.0 178 76.4
Sopen12g002000 Solanum pennellii HOM05D006031 ORTHO05D007417 1.4e-73 280.0 178 77.5
CsaV3_2G002120 Cucumis sativus L. HOM05D006031 ORTHO05D007417 1.8e-73 279.6 178 76.4
SalBow3G0984 Salvia bowleyana HOM05D006031 ORTHO05D007417 2.4e-73 279.3 183 74.3
Os06g0162600 Oryza sativa ssp. japonica HOM05D006031 ORTHO05D007417 2.6e-72 275.8 178 75.3
Zm00001eb271370 Zea mays HOM05D006031 ORTHO05D007417 2.6e-72 275.8 178 77.0
Peaxi162Scf00539g00717 Petunia axillaris HOM05D006031 ORTHO05D007417 1.3e-71 273.5 178 74.7
ClCG11G002340 Citrullus lanatus HOM05D006031 ORTHO05D007417 2.9e-71 272.3 199 69.3
HPP92_005270 Vanilla planifolia HOM05D006031 ORTHO05D007417 2.9e-71 272.3 183 71.6
ATR0315G117 Amborella trichopoda HOM05D006031 ORTHO05D007417 6.4e-71 271.2 178 74.2
Actinidia09434 Actinidia chinensis HOM05D006031 ORTHO05D007417 8.4e-71 270.8 181 74.6
CDE02G2180 Ceratophyllum demersum HOM05D006031 ORTHO05D007417 3.2e-70 268.9 188 69.7
vmacro10877 Vaccinium macrocarpon HOM05D006031 ORTHO05D007417 7.1e-70 267.7 157 80.9
Duzib150G0325 Durio zibethinus HOM05D006031 ORTHO05D007417 2.1e-69 266.2 157 82.8
Lj2g0026722 Lotus japonicus HOM05D006031 ORTHO05D007417 6.0e-69 264.6 157 81.5
CSS0004856 Camellia sinensis var. sinensis HOM05D006031 ORTHO05D007417 7.9e-69 264.2 179 72.6
MSTRG.26365 Avicennia marina HOM05D006031 ORTHO05D007417 6.7e-68 261.2 157 80.3
Ah.09g230920 Amaranthus hybridus HOM05D006031 ORTHO05D007417 1.5e-67 260.0 157 76.4
Mapoly0136s0020 Marchantia polymorpha HOM05D006031 ORTHO05D007417 9.6e-67 257.3 178 67.4
unitig_62.g23476 Utricularia gibba HOM05D006031 ORTHO05D007417 6.2e-66 254.6 188 67.6
CARHR236620 Cardamine hirsuta HOM05D006031 ORTHO05D007417 8.1e-66 254.2 157 76.4
Cfa003225 Carpinus fangiana HOM05D006031 ORTHO05D007417 8.1e-66 254.2 178 74.7
Pp3c6_12910 Physcomitrium patens HOM05D006031 ORTHO05D007417 2.4e-65 252.7 178 68.0
SGA_v2.0_scaffold387G50523 Striga asiatica HOM05D006031 ORTHO05D007417 1.2e-64 250.4 181 68.0
Psat1g044640 Pisum sativum HOM05D006031 ORTHO05D007417 4.5e-64 248.4 157 77.1
SMO164G0018 Selaginella moellendorffii HOM05D006031 ORTHO05D007417 6.5e-63 244.6 178 68.0
SMO304G0145 Selaginella moellendorffii HOM05D006031 ORTHO05D007417 4.2e-62 241.9 178 67.4
AagrBONN_evm.TU.Sc2ySwM_228.3645 Anthoceros agrestis HOM05D006031 ORTHO05D007417 5.5e-62 241.5 178 63.5
Dinv41633 Davidia involucrata HOM05D006031 ORTHO05D007417 3.9e-60 235.3 139 82.0
Haze_25783 Corylus avellana HOM05D006031 ORTHO05D007417 1.9e-59 233.0 141 82.3
Hma1.2p1_0945F.1_g240060 Hydrangea macrophylla HOM05D006031 ORTHO05D007417 1.2e-56 223.8 139 77.0
ClCG06G015420 Citrullus lanatus HOM05D006031 ORTHO05D007417 5.9e-56 221.5 142 75.4
CBR_g49195 Chara braunii HOM05D005459 ORTHO05D006751 8.2e-50 201.1 175 56.0
PGSC0003DMG400013889 Solanum tuberosum HOM05D000011 ORTHO05D007417 6.9e-49 198.0 143 68.5
Rhsim05G0043800 Rhododendron simsii HOM05D006031 ORTHO05D000070 2.6e-48 196.1 221 49.3
DCAR_012059 Daucus carota HOM05D006031 ORTHO05D007417 8.5e-47 191.0 142 66.2
Cre08.g384700 Chlamydomonas reinhardtii HOM05D006031 ORTHO05D007417 5.3e-41 171.8 186 45.7
Lj4A429T15 Lonicera japonica HOM05D006031 ORTHO05D007417 2.5e-38 162.9 95 83.2
Sed0012983 Sechium edule HOM05D006031 ORTHO05D007417 7.2e-38 161.4 105 73.3
PRCOL_00003743 Prasinoderma coloniale HOM05D006031 ORTHO05D007417 9.4e-38 161.0 183 46.4
MCO05G480 Micromonas commoda HOM05D006031 ORTHO05D007417 2.4e-33 146.4 183 47.0
arahy.Tifrunner.gnm1.ann1.PEIA6U Arachis hypogaea HOM05D006031 ORTHO05D007417 7.7e-32 141.4 125 60.0
Zm00001eb271350 Zea mays HOM05D006031 ORTHO05D007417 2.9e-31 139.4 96 70.8
Zm00001eb442390 Zea mays HOM05D006031 ORTHO05D007417 2.9e-31 139.4 96 70.8
Haze_26211 Corylus avellana HOM05D006031 ORTHO05D007417 1.4e-25 120.6 198 38.4
Haze_27462 Corylus avellana HOM05D006031 ORTHO05D007417 1.4e-25 120.6 198 38.4
Lsat_1_v5_gn_8_38160 Lactuca sativa HOM05D006031 ORTHO05D007417 5.5e-22 108.6 104 56.7
PRCOL_00005480 Prasinoderma coloniale HOM05D006031 ORTHO05D007417 5.5e-22 108.6 179 38.0
SEGI_07643 Sequoiadendron giganteum HOM05D006031 ORTHO05D007417 2.3e-20 103.2 76 60.5
AUR62044225 Chenopodium quinoa HOM05D003603 ORTHO05D004186 3.7e-18 95.9 51 88.2
AUR62033208 Chenopodium quinoa HOM05D003603 ORTHO05D004186 4.8e-18 95.5 51 88.2
Zm00001eb271390 Zea mays HOM05D006031 ORTHO05D007417 4.1e-17 92.4 53 84.9
VMungo0464G0776 Vigna mungo HOM05D000002 ORTHO05D000001 6.5e-15 85.1 44 88.6
SEGI_21752 Sequoiadendron giganteum HOM05D006031 ORTHO05D007417 1.2e-13 80.9 57 64.9
Lj4C429T0 Lonicera japonica HOM05D002180 ORTHO05D001339 1.5e-11 73.9 38 89.5
Medtr6g087210 Medicago truncatula HOM05D006031 ORTHO05D007417 2.8e-10 69.7 54 59.3
MBI06_g04307_MAGBIO Magnolia biondii HOM05D006031 ORTHO05D007417 5.4e-09 65.5 134 35.8
Glyma.09G193200 Glycine max HOM05D006031 ORTHO05D007417 2.0e-08 63.5 59 59.3
Thhalv10002738m.g Eutrema salsugineum HOM05D006031 ORTHO05D007417 4.5e-08 62.4 39 76.9
Lsat_1_v5_gn_2_108580 Lactuca sativa HOM05D006031 ORTHO05D007417 1.7e-07 60.5 39 76.9
PGSC0003DMG400015828 Solanum tuberosum HOM05D000124 ORTHO05D397188 1.1e-06 57.8 36 66.7
COL.COLO4_34793 Corchorus olitorius HOM05D006031 ORTHO05D007417 2.5e-06 56.6 33 78.8


User provided reference genes

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