Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.7G225200 Prunus persica HOM05D003644 ORTHO05D004305 8.1e-96 354.0 212 100.0
MD02G1057600 Malus domestica HOM05D003644 ORTHO05D004305 3.2e-68 262.3 215 74.9
MD15G1192000 Malus domestica HOM05D003644 ORTHO05D004305 4.1e-63 245.4 214 76.6
Thecc.09G105500 Theobroma cacao HOM05D003644 ORTHO05D004305 3.8e-61 238.8 213 68.1
QL02p044635 Quercus lobata HOM05D003644 ORTHO05D004305 1.5e-57 226.9 215 71.6
Duzib187G1156 Durio zibethinus HOM05D003644 ORTHO05D004305 1.9e-57 226.5 213 65.7
Haze_25785 Corylus avellana HOM05D003644 ORTHO05D004305 1.6e-56 223.4 213 65.7
Duzib150G1566 Durio zibethinus HOM05D003644 ORTHO05D004305 6.3e-56 221.5 214 63.1
GSVIVG01015346001 Vitis vinifera HOM05D003644 ORTHO05D004305 8.2e-56 221.1 212 59.4
CiPaw.03G227900 Carya illinoinensis HOM05D003644 ORTHO05D004305 3.1e-55 219.2 214 62.6
Duzib168G0231 Durio zibethinus HOM05D003644 ORTHO05D004305 1.4e-52 210.3 213 62.0
CANSAT56G0200 Cannabis sativa HOM05D003644 ORTHO05D004305 1.9e-52 209.9 226 63.3
Manes.03G024200 Manihot esculenta HOM05D003644 ORTHO05D004305 3.6e-51 205.7 214 55.1
Ciclev10010512m.g Citrus clementina HOM05D003644 ORTHO05D004305 6.1e-51 204.9 217 60.8
Potri.018G084100 Populus trichocarpa HOM05D003644 ORTHO05D004305 8.8e-50 201.1 215 59.5
Cpa.g.sc23.57 Carica papaya HOM05D003644 ORTHO05D004305 2.5e-49 199.5 213 56.3
Manes.16G112500 Manihot esculenta HOM05D003644 ORTHO05D004305 2.2e-48 196.4 213 57.7
Potri.006G161100 Populus trichocarpa HOM05D003644 ORTHO05D004305 1.1e-47 194.1 214 55.1
TAR636G2793 Trochodendron aralioides HOM05D003644 ORTHO05D004305 3.1e-47 192.6 213 54.9
Atru.chr7.1390 Acer truncatum HOM05D003644 ORTHO05D004305 9.1e-47 191.0 214 59.8
TAR624G1421 Trochodendron aralioides HOM05D003644 ORTHO05D004305 1.2e-46 190.7 212 54.2
FAN19G0617 Fragaria x ananassa HOM05D003644 ORTHO05D004305 4.5e-46 188.7 219 61.6
FvH4_1g05660 Fragaria vesca HOM05D003644 ORTHO05D004305 2.2e-45 186.4 219 61.2
Glyma.05G229100 Glycine max HOM05D003644 ORTHO05D004305 8.5e-45 184.5 213 53.1
FAN26G3023 Fragaria x ananassa HOM05D003644 ORTHO05D004305 1.9e-44 183.3 219 61.2
VMungo0251G1747 Vigna mungo HOM05D003644 ORTHO05D004305 2.5e-44 183.0 214 53.7
FAN26G0903 Fragaria x ananassa HOM05D003644 ORTHO05D004305 3.2e-44 182.6 219 61.2
Sabra18G0072500 Salix brachista HOM05D003644 ORTHO05D004305 4.2e-44 182.2 239 54.8
FAN28G1311 Fragaria x ananassa HOM05D003644 ORTHO05D004305 7.2e-44 181.4 230 58.3
Phvul.002G311400 Phaseolus vulgaris HOM05D003644 ORTHO05D004305 7.2e-44 181.4 213 53.5
Gorai.010G073900 Gossypium raimondii HOM05D003644 ORTHO05D004305 9.4e-44 181.0 214 55.6
CSS0010496 Camellia sinensis var. sinensis HOM05D003644 ORTHO05D004305 2.1e-43 179.9 218 55.0
CSS0033414 Camellia sinensis var. sinensis HOM05D003644 ORTHO05D004305 2.1e-43 179.9 218 55.0
Glyma.01G145600 Glycine max HOM05D003644 ORTHO05D004305 3.6e-43 179.1 214 62.6
MBI04_g14930_MAGBIO Magnolia biondii HOM05D003644 ORTHO05D004305 4.7e-43 178.7 213 50.7
Dinv41640 Davidia involucrata HOM05D003644 ORTHO05D004305 1.8e-42 176.8 175 64.0
Psat1g044920 Pisum sativum HOM05D003644 ORTHO05D004305 1.8e-42 176.8 212 52.8
VMungo0464G0020 Vigna mungo HOM05D003644 ORTHO05D004305 1.8e-42 176.8 214 57.0
Gohir.D06G063400 Gossypium hirsutum HOM05D003644 ORTHO05D004305 4.4e-41 172.2 211 54.0
Phvul.004G168350 Phaseolus vulgaris HOM05D003644 ORTHO05D004305 4.4e-41 172.2 213 54.5
Lj2g0017641 Lotus japonicus HOM05D003644 ORTHO05D004305 5.7e-41 171.8 213 50.2
CSS0008241 Camellia sinensis var. sinensis HOM05D003644 ORTHO05D004305 9.7e-41 171.0 216 53.7
FAN23G2152 Fragaria x ananassa HOM05D003644 ORTHO05D004305 1.3e-40 170.6 230 54.8
TWI34G1832 Tripterygium wilfordii HOM05D003644 ORTHO05D004305 2.2e-40 169.9 223 59.6
Glyma.09G193400 Glycine max HOM05D003644 ORTHO05D004305 2.8e-40 169.5 214 52.8
Peaxi162Scf00665g00003 Petunia axillaris HOM05D003644 ORTHO05D004305 2.8e-40 169.5 216 50.5
Medtr6g088280 Medicago truncatula HOM05D003644 ORTHO05D004305 8.2e-40 167.9 212 48.6
Gohir.A06G064800 Gossypium hirsutum HOM05D003644 ORTHO05D004305 4.1e-39 165.6 213 53.5
Gohir.D05G026700 Gossypium hirsutum HOM05D003644 ORTHO05D004305 5.3e-39 165.2 216 55.6
TPR.G34913 Trifolium pratense HOM05D003644 ORTHO05D004305 7.0e-39 164.9 223 47.1
THA.LOC104814562 Tarenaya hassleriana HOM05D003644 ORTHO05D004305 9.1e-39 164.5 219 47.9
Nn2g11654 Nelumbo nucifera HOM05D003644 ORTHO05D004305 1.6e-38 163.7 216 48.1
Oeu015581.1 Olea europaea HOM05D003644 ORTHO05D004305 1.6e-38 163.7 210 51.0
arahy.Tifrunner.gnm1.ann1.TDG8V6 Arachis hypogaea HOM05D003644 ORTHO05D004305 2.0e-38 163.3 226 52.2
Glyma.08G036100 Glycine max HOM05D003644 ORTHO05D004305 2.0e-38 163.3 214 49.1
SalBow6G0047 Salvia bowleyana HOM05D003644 ORTHO05D004305 2.0e-38 163.3 214 53.3
Gorai.001G007300 Gossypium raimondii HOM05D003644 ORTHO05D004305 3.5e-38 162.5 217 56.7
Nn3g18137 Nelumbo nucifera HOM05D003644 ORTHO05D004305 4.5e-38 162.2 215 52.1
ClCG06G008860 Citrullus lanatus HOM05D003644 ORTHO05D004305 7.7e-38 161.4 219 52.5
Gohir.A05G025200 Gossypium hirsutum HOM05D003644 ORTHO05D004305 1.3e-37 160.6 216 54.2
Gorai.009G026800 Gossypium raimondii HOM05D003644 ORTHO05D004305 6.5e-37 158.3 224 53.1
Peaxi162Scf00231g00061 Petunia axillaris HOM05D003644 ORTHO05D004305 8.5e-37 157.9 220 49.5
Gohir.D07G007600 Gossypium hirsutum HOM05D003644 ORTHO05D004305 1.9e-36 156.8 217 55.8
Lalb_Chr22g0352641 Lupinus albus HOM05D003644 ORTHO05D004305 1.2e-35 154.1 219 59.4
RcHm_v2.0_Chr2g0091291 Rosa chinensis HOM05D003644 ORTHO05D004305 1.6e-35 153.7 179 61.5
ClCG11G002330 Citrullus lanatus HOM05D003644 ORTHO05D004305 2.1e-35 153.3 217 49.8
PGR142G1369 Punica granatum HOM05D003644 ORTHO05D004305 8.0e-35 151.4 225 47.6
COL.COLO4_34805 Corchorus olitorius HOM05D003644 ORTHO05D004305 1.4e-34 150.6 218 54.1
CsaV3_1G021830 Cucumis sativus L. HOM05D003644 ORTHO05D004305 2.3e-34 149.8 217 52.1
MSTRG.6013 Avicennia marina HOM05D003644 ORTHO05D004305 4.0e-34 149.1 214 44.9
MELO3C024703.2 Cucumis melo HOM05D003644 ORTHO05D004305 8.8e-34 147.9 216 50.9
Sed0019018 Sechium edule HOM05D003644 ORTHO05D004305 1.1e-33 147.5 214 46.7
Sed0013314 Sechium edule HOM05D003644 ORTHO05D004305 1.5e-33 147.1 212 47.6
TWI32G0193 Tripterygium wilfordii HOM05D003644 ORTHO05D004305 2.0e-33 146.7 217 53.9
CsaV3_2G002110 Cucumis sativus L. HOM05D003644 ORTHO05D004305 4.4e-33 145.6 220 48.2
Gohir.A07G004600 Gossypium hirsutum HOM05D003644 ORTHO05D004305 2.2e-32 143.3 207 55.1
MELO3C004570.2 Cucumis melo HOM05D003644 ORTHO05D004305 2.8e-32 142.9 220 48.2
MSTRG.19571 Avicennia marina HOM05D003644 ORTHO05D004305 1.2e-30 137.5 176 48.3
DCAR_012057 Daucus carota HOM05D003644 ORTHO05D004305 2.0e-30 136.7 219 46.6
Sopen12g003210 Solanum pennellii HOM05D003644 ORTHO05D004305 2.0e-30 136.7 215 47.0
THA.LOC104804017 Tarenaya hassleriana HOM05D003644 ORTHO05D004305 2.0e-30 136.7 216 47.2
PGSC0003DMG400000374 Solanum tuberosum HOM05D003644 ORTHO05D004305 2.7e-30 136.3 215 46.5
AL3G48010 Arabidopsis lyrata HOM05D003644 ORTHO05D004305 4.5e-30 135.6 218 47.2
Carub.0007s1180 Capsella rubella HOM05D003644 ORTHO05D004305 4.5e-30 135.6 219 47.5
Thhalv10002311m.g Eutrema salsugineum HOM05D003644 ORTHO05D004305 1.0e-29 134.4 220 45.9
arahy.Tifrunner.gnm1.ann1.X7P2RE Arachis hypogaea HOM05D003644 ORTHO05D004305 1.7e-29 133.7 155 57.4
AT4G28840 Arabidopsis thaliana HOM05D003644 ORTHO05D004305 1.5e-28 130.6 220 45.5
PGSC0003DMG400003139 Solanum tuberosum HOM05D003644 ORTHO05D004305 1.5e-28 130.6 214 42.1
Lalb_Chr05g0223051 Lupinus albus HOM05D003644 ORTHO05D004305 1.9e-28 130.2 172 55.2
Cc06_g10070 Coffea canephora HOM05D003644 ORTHO05D004305 4.2e-28 129.0 215 47.9
arahy.Tifrunner.gnm1.ann1.XM0XDL Arachis hypogaea HOM05D003644 ORTHO05D004305 7.2e-28 128.3 218 48.6
BcaC07g41224 Brassica carinata HOM05D003644 ORTHO05D004305 7.2e-28 128.3 215 41.4
C08p42300 Brassica napus HOM05D003644 ORTHO05D004305 9.4e-28 127.9 215 41.4
BolC8t51790H Brassica oleracea HOM05D003644 ORTHO05D004305 9.4e-28 127.9 215 41.4
Oeu002262.2 Olea europaea HOM05D003644 ORTHO05D004305 1.6e-27 127.1 159 48.4
C01p10620 Brassica napus HOM05D003644 ORTHO05D004305 2.1e-27 126.7 218 42.7
BraA01t00855Z Brassica rapa HOM05D003644 ORTHO05D004305 2.1e-27 126.7 218 42.7
CAN.G1774.6 Capsicum annuum HOM05D003644 ORTHO05D004305 2.7e-27 126.3 177 46.9
A01p09070 Brassica napus HOM05D003644 ORTHO05D004305 3.6e-27 125.9 218 42.7
CARHR110580 Cardamine hirsuta HOM05D003644 ORTHO05D004305 4.7e-27 125.6 218 44.0
C07p56470 Brassica napus HOM05D003644 ORTHO05D004305 6.1e-27 125.2 221 42.1
BolC7t46126H Brassica oleracea HOM05D003644 ORTHO05D004305 6.1e-27 125.2 221 42.1
A03p58450 Brassica napus HOM05D003644 ORTHO05D004305 1.0e-26 124.4 221 42.1
A09p59020 Brassica napus HOM05D003644 ORTHO05D004305 1.4e-26 124.0 215 40.5
BolC1t01024H Brassica oleracea HOM05D003644 ORTHO05D004305 1.4e-26 124.0 218 42.2
BraA09t41288Z Brassica rapa HOM05D003644 ORTHO05D004305 1.4e-26 124.0 215 40.5
BcaC06g32601 Brassica carinata HOM05D003644 ORTHO05D004305 1.8e-26 123.6 221 42.1
Hma1.2p1_0945F.1_g240090 Hydrangea macrophylla HOM05D003644 ORTHO05D004305 1.8e-26 123.6 213 47.9
Sp7g26840 Schrenkiella parvula HOM05D003644 ORTHO05D004305 2.3e-26 123.2 221 48.0
Sopen07g007520 Solanum pennellii HOM05D003644 ORTHO05D004305 3.0e-26 122.9 215 43.7
Sp3g33380 Schrenkiella parvula HOM05D003644 ORTHO05D004305 2.0e-25 120.2 224 44.6
Lalb_Chr16g0388081 Lupinus albus HOM05D003644 ORTHO05D004305 3.4e-25 119.4 126 50.8
Sed0028016 Sechium edule HOM05D003644 ORTHO05D004305 3.4e-25 119.4 216 40.7
PSO566G0277 Papaver somniferum HOM05D003644 ORTHO05D004305 7.5e-25 118.2 217 44.2
BcaNung01359 Brassica carinata HOM05D003644 ORTHO05D004305 1.3e-24 117.5 183 45.4
BcaC09g51666 Brassica carinata HOM05D003644 ORTHO05D004305 2.2e-24 116.7 183 45.4
ECA234G2378 Erigeron canadensis HOM05D003644 ORTHO05D004305 2.2e-24 116.7 183 43.2
PSO782G2161 Papaver somniferum HOM05D003644 ORTHO05D004305 3.7e-24 115.9 217 43.8
AUR62010940 Chenopodium quinoa HOM05D003644 ORTHO05D004305 6.3e-24 115.2 221 39.4
Lsat_1_v5_gn_8_96040 Lactuca sativa HOM05D003644 ORTHO05D004305 1.2e-22 110.9 133 51.1
Actinidia20403 Actinidia chinensis HOM05D003644 ORTHO05D004305 2.7e-22 109.8 210 45.2
Nitab4.5_0014820g0010 Nicotiana tabacum HOM05D003644 ORTHO05D004305 3.5e-22 109.4 156 48.1
Carub.0003s3436 Capsella rubella HOM05D003644 ORTHO05D004305 5.9e-22 108.6 191 44.0
TPR.G23503 Trifolium pratense HOM05D003644 ORTHO05D004305 7.7e-22 108.2 174 46.6
arahy.Tifrunner.gnm1.ann1.R9ZCFD Arachis hypogaea HOM05D003644 ORTHO05D004305 1.0e-21 107.8 167 49.1
Migut.K00491 Erythranthe guttata HOM05D003644 ORTHO05D004305 2.9e-21 106.3 181 45.9
Aa31LG2G21540 Aethionema arabicum HOM05D003644 ORTHO05D004305 3.8e-21 105.9 178 48.9
COL.COLO4_17464 Corchorus olitorius HOM05D003644 ORTHO05D004305 5.0e-21 105.5 163 45.4
C09p15050 Brassica napus HOM05D003644 ORTHO05D004305 6.5e-21 105.1 173 43.4
Aa31LG8G17030 Aethionema arabicum HOM05D003644 ORTHO05D004305 1.1e-20 104.4 166 42.2
BcaNung04091 Brassica carinata HOM05D003644 ORTHO05D004305 1.9e-20 103.6 191 42.4
BcaB08g34898 Brassica carinata HOM05D003644 ORTHO05D004305 3.2e-20 102.8 192 38.0
BcaC07g41225 Brassica carinata HOM05D003644 ORTHO05D004305 3.2e-20 102.8 192 38.0
HanXRQChr12g0358181 Helianthus annuus HOM05D003644 ORTHO05D004305 7.2e-20 101.7 179 40.8
A09p12690 Brassica napus HOM05D003644 ORTHO05D004305 9.4e-20 101.3 175 43.4
Actinidia09436 Actinidia chinensis HOM05D003644 ORTHO05D004305 2.1e-19 100.1 220 39.5
BolC7t40541H Brassica oleracea HOM05D003644 ORTHO05D004305 2.7e-19 99.8 217 38.2
PGR102G0050 Punica granatum HOM05D003644 ORTHO05D004305 1.0e-18 97.8 218 45.4
Actinidia32668 Actinidia chinensis HOM05D003644 ORTHO05D004305 1.4e-18 97.4 157 45.2
BcaC04g22808 Brassica carinata HOM05D003644 ORTHO05D004305 4.0e-18 95.9 176 45.5
BolC9t54408H Brassica oleracea HOM05D003644 ORTHO05D004305 4.0e-18 95.9 176 45.5
Thhalv10026355m.g Eutrema salsugineum HOM05D003644 ORTHO05D004305 4.0e-18 95.9 212 35.4
Hund09225 Selenicereus undatus HOM05D003644 ORTHO05D004305 4.0e-18 95.9 221 43.4
AT2G20080 Arabidopsis thaliana HOM05D003644 ORTHO05D004305 2.0e-17 93.6 216 39.4
DCAR_010477 Daucus carota HOM05D003644 ORTHO05D004305 2.6e-17 93.2 216 37.0
HanXRQChr14g0449921 Helianthus annuus HOM05D003644 ORTHO05D004305 2.6e-17 93.2 209 39.2
Solyc12g007240.3 Solanum lycopersicum HOM05D003644 ORTHO05D004305 4.4e-17 92.4 143 42.0
C07p01040 Brassica napus HOM05D003644 ORTHO05D004305 1.7e-16 90.5 217 36.9
Hund09226 Selenicereus undatus HOM05D003644 ORTHO05D004305 2.8e-16 89.7 195 35.9
EL10Ac8g18428 Beta vulgaris HOM05D003644 ORTHO05D004305 3.7e-16 89.4 218 35.8
A07p00580 Brassica napus HOM05D003644 ORTHO05D004305 4.9e-16 89.0 216 36.1
Aqoxy7G01525 Aquilegia oxysepala HOM05D003644 ORTHO05D004305 8.3e-16 88.2 213 34.3
Sc18g0001380 Simmondsia chinensis HOM05D003644 ORTHO05D004305 1.4e-15 87.4 216 39.4
Sc08g0007690 Simmondsia chinensis HOM05D003644 ORTHO05D004305 3.1e-15 86.3 214 40.2
Hund26238 Selenicereus undatus HOM05D003644 ORTHO05D004305 1.2e-14 84.3 215 35.3
Eucgr.C01280 Eucalyptus grandis HOM05D003644 ORTHO05D004305 5.9e-14 82.0 218 40.4
BcaC06g36690 Brassica carinata HOM05D003644 ORTHO05D004305 1.0e-13 81.3 124 42.7
BraA07t27854Z Brassica rapa HOM05D003644 ORTHO05D004305 1.7e-13 80.5 141 41.8
Nitab4.5_0002431g0010 Nicotiana tabacum HOM05D003644 ORTHO05D004305 1.7e-13 80.5 94 52.1
BcaB03g16807 Brassica carinata HOM05D003644 ORTHO05D004305 2.3e-13 80.1 218 34.4
BraA09t36915Z Brassica rapa HOM05D003644 ORTHO05D004305 3.3e-12 76.3 171 36.3
Lsat_1_v5_gn_5_147641 Lactuca sativa HOM05D003644 ORTHO05D004305 6.1e-11 72.0 129 43.4
Psat7g014640 Pisum sativum HOM05D003644 ORTHO05D004305 4.0e-10 69.3 172 41.3
Solyc07g018370.3 Solanum lycopersicum HOM05D003644 ORTHO05D004305 4.0e-10 69.3 106 45.3
AL7G23640 Arabidopsis lyrata HOM05D003644 ORTHO05D004305 5.2e-10 68.9 127 38.6
Oeu018442.1 Olea europaea HOM05D003644 ORTHO05D004305 1.5e-09 67.4 92 44.6
Medtr8g102890 Medicago truncatula HOM05D003644 ORTHO05D004305 2.6e-09 66.6 126 44.4
Nitab4.5_0001004g0030 Nicotiana tabacum HOM05D003644 ORTHO05D004305 4.4e-09 65.9 133 43.6
CARHR236630 Cardamine hirsuta HOM05D003644 ORTHO05D004305 5.7e-09 65.5 66 69.7
Zm00001eb360290 Zea mays HOM05D003644 ORTHO05D004305 5.7e-09 65.5 181 32.6
Zm00001eb156860 Zea mays HOM05D003644 ORTHO05D004305 7.5e-09 65.1 176 30.1
BcaB03g16801 Brassica carinata HOM05D003644 ORTHO05D004305 9.8e-09 64.7 43 69.8
Ah.09g230900 Amaranthus hybridus HOM05D003644 ORTHO05D004305 1.7e-08 63.9 201 33.8
unitig_578.g15927 Utricularia gibba HOM05D003644 ORTHO05D004305 4.9e-08 62.4 112 39.3
Rhsim05G0043500 Rhododendron simsii HOM05D003644 ORTHO05D004305 8.3e-08 61.6 72 51.4
HPP92_019983 Vanilla planifolia HOM05D003644 ORTHO05D004305 1.1e-07 61.2 181 32.0
Sc08g0007700 Simmondsia chinensis HOM05D003644 ORTHO05D004305 2.7e-06 56.6 166 31.9
Os05g0559316 Oryza sativa ssp. japonica HOM05D003644 ORTHO05D004305 5.9e-06 55.5 89 40.4


User provided reference genes

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