Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.7G224700 Prunus persica HOM05D004971 ORTHO05D006289 1.9e-172 609.0 294 100.0
MD15G1192600 Malus domestica HOM05D004971 ORTHO05D006289 3.1e-122 442.2 288 75.7
RcHm_v2.0_Chr2g0091361 Rosa chinensis HOM05D004971 ORTHO05D006289 5.9e-121 438.0 293 68.9
FvH4_1g05710 Fragaria vesca HOM05D004971 ORTHO05D006289 4.5e-113 411.8 265 70.6
FAN26G3039 Fragaria x ananassa HOM05D001382 ORTHO05D001266 2.2e-112 409.5 264 70.1
FAN28G1806 Fragaria x ananassa HOM05D001382 ORTHO05D006289 3.8e-112 408.7 264 70.1
CANSAT56G2306 Cannabis sativa HOM05D004971 ORTHO05D006289 5.0e-112 408.3 285 68.1
FAN23G0317 Fragaria x ananassa HOM05D001382 ORTHO05D006289 8.5e-112 407.5 294 65.0
FAN19G1252 Fragaria x ananassa HOM05D001382 ORTHO05D001266 1.9e-111 406.4 261 69.7
CANSAT56G1645 Cannabis sativa HOM05D004971 ORTHO05D006289 9.4e-111 404.1 285 67.7
CiPaw.03G227700 Carya illinoinensis HOM05D004971 ORTHO05D006289 2.7e-105 386.0 267 67.4
QL01p004043 Quercus lobata HOM05D004971 ORTHO05D006289 6.6e-104 381.3 276 67.0
Phvul.002G310900 Phaseolus vulgaris HOM05D004971 ORTHO05D006289 3.3e-103 379.0 292 62.3
Glyma.08G035500 Glycine max HOM05D004971 ORTHO05D006289 2.1e-102 376.3 273 64.5
Lalb_Chr05g0223101 Lupinus albus HOM05D004971 ORTHO05D006289 4.4e-100 368.6 289 60.2
Dinv41645 Davidia involucrata HOM05D004971 ORTHO05D006289 4.9e-99 365.2 268 63.4
VMungo0251G3379 Vigna mungo HOM05D004971 ORTHO05D006289 5.4e-98 361.7 273 61.2
Carub.0008s1117 Capsella rubella HOM05D004971 ORTHO05D006289 9.2e-98 360.9 269 62.8
Atru.chr7.1418 Acer truncatum HOM05D004971 ORTHO05D006289 1.2e-97 360.5 290 60.7
AL8G25390 Arabidopsis lyrata HOM05D004971 ORTHO05D006289 4.6e-97 358.6 285 61.1
GSVIVG01015340001 Vitis vinifera HOM05D004971 ORTHO05D006289 4.6e-97 358.6 283 62.9
AT5G51130 Arabidopsis thaliana HOM05D004971 ORTHO05D006289 5.9e-97 358.2 265 63.4
CSS0031404 Camellia sinensis var. sinensis HOM05D004971 ORTHO05D006289 1.0e-96 357.5 286 61.5
CARHR256940 Cardamine hirsuta HOM05D004971 ORTHO05D006289 1.0e-96 357.5 267 62.9
Medtr8g102950 Medicago truncatula HOM05D004971 ORTHO05D006289 5.0e-96 355.1 293 59.0
Lj4g0001585 Lotus japonicus HOM05D004971 ORTHO05D006289 1.9e-95 353.2 264 61.7
Thecc.09G104800 Theobroma cacao HOM05D004971 ORTHO05D006289 4.3e-95 352.1 273 59.7
THA.LOC104811095 Tarenaya hassleriana HOM05D004971 ORTHO05D006289 1.6e-94 350.1 281 59.4
Thhalv10014188m.g Eutrema salsugineum HOM05D004971 ORTHO05D006289 2.1e-94 349.7 263 62.4
Nitab4.5_0000066g0130 Nicotiana tabacum HOM05D004971 ORTHO05D006289 1.0e-93 347.4 273 60.8
Gorai.001G007500 Gossypium raimondii HOM05D004971 ORTHO05D006289 6.8e-93 344.7 291 58.8
Gohir.D07G007800 Gossypium hirsutum HOM05D004971 ORTHO05D006289 8.9e-93 344.4 291 58.8
Nitab4.5_0003331g0010 Nicotiana tabacum HOM05D004971 ORTHO05D006289 1.5e-92 343.6 269 61.0
arahy.Tifrunner.gnm1.ann1.050WC1 Arachis hypogaea HOM05D004971 ORTHO05D006289 2.0e-92 343.2 293 55.3
C03p19180 Brassica napus HOM05D004971 ORTHO05D006289 2.0e-92 343.2 292 57.9
Sabra18G0073100 Salix brachista HOM05D004971 ORTHO05D006289 2.0e-92 343.2 267 60.7
Sp6g13340 Schrenkiella parvula HOM05D004971 ORTHO05D006289 3.4e-92 342.4 262 61.8
BcaB05g24018 Brassica carinata HOM05D004971 ORTHO05D006289 4.4e-92 342.0 262 62.2
BcaC01g06098 Brassica carinata HOM05D004971 ORTHO05D006289 1.3e-91 340.5 263 60.8
BolC3t14306H Brassica oleracea HOM05D004971 ORTHO05D006289 1.3e-91 340.5 263 60.8
BraA03t10920Z Brassica rapa HOM05D004971 ORTHO05D006289 1.7e-91 340.1 263 60.8
Potri.018G084700 Populus trichocarpa HOM05D004971 ORTHO05D006289 1.7e-91 340.1 279 57.3
Aa31LG3G7640 Aethionema arabicum HOM05D004971 ORTHO05D006289 2.2e-91 339.7 290 57.6
BcaC03g14623 Brassica carinata HOM05D004971 ORTHO05D006289 2.9e-91 339.3 262 61.1
BolC2t08195H Brassica oleracea HOM05D004971 ORTHO05D006289 2.9e-91 339.3 262 61.1
Eucgr.C03795 Eucalyptus grandis HOM05D004971 ORTHO05D006289 4.9e-91 338.6 282 56.7
Gohir.A07G004400 Gossypium hirsutum HOM05D004971 ORTHO05D006289 4.9e-91 338.6 296 57.1
PGR102G0147 Punica granatum HOM05D004971 ORTHO05D006289 8.3e-91 337.8 253 62.5
TPR.G23453 Trifolium pratense HOM05D004971 ORTHO05D006289 8.3e-91 337.8 290 57.9
ClCG06G008900 Citrullus lanatus HOM05D004971 ORTHO05D006289 1.1e-90 337.4 273 58.2
BcaC01g06076 Brassica carinata HOM05D004971 ORTHO05D006289 1.9e-90 336.7 264 60.2
A02p12480 Brassica napus HOM05D004971 ORTHO05D006289 1.9e-90 336.7 267 60.7
BraA02t06311Z Brassica rapa HOM05D004971 ORTHO05D006289 1.9e-90 336.7 267 60.7
Oeu000366.2 Olea europaea HOM05D004971 ORTHO05D006289 1.9e-90 336.7 307 55.0
C02p20580 Brassica napus HOM05D004971 ORTHO05D006289 3.2e-90 335.9 262 60.7
A03p16290 Brassica napus HOM05D004971 ORTHO05D006289 4.1e-90 335.5 262 60.3
Rhsim03G0239000 Rhododendron simsii HOM05D004971 ORTHO05D006289 1.7e-88 330.1 264 59.8
TWI12G1172 Tripterygium wilfordii HOM05D004971 ORTHO05D006289 6.6e-88 328.2 275 60.0
Solyc05g050000.3 Solanum lycopersicum HOM05D004971 ORTHO05D006289 1.1e-87 327.4 269 61.0
TAR636G2606 Trochodendron aralioides HOM05D004971 ORTHO05D006289 1.9e-87 326.6 289 55.4
TAR626G1908 Trochodendron aralioides HOM05D001382 ORTHO05D006289 2.5e-87 326.2 289 55.4
Psat7g014440 Pisum sativum HOM05D004971 ORTHO05D006289 3.3e-87 325.9 275 58.5
Sopen05g028390 Solanum pennellii HOM05D004971 ORTHO05D006289 3.3e-87 325.9 268 60.4
AUR62021639 Chenopodium quinoa HOM05D004971 ORTHO05D006289 7.3e-87 324.7 271 56.8
HanXRQChr09g0239411 Helianthus annuus HOM05D004971 ORTHO05D006289 7.3e-87 324.7 289 58.1
arahy.Tifrunner.gnm1.ann1.R8N6MQ Arachis hypogaea HOM05D004971 ORTHO05D006289 2.8e-86 322.8 290 53.1
Sc08g0007770 Simmondsia chinensis HOM05D004971 ORTHO05D006289 3.6e-86 322.4 293 53.9
MSTRG.19566 Avicennia marina HOM05D004971 ORTHO05D006289 8.1e-86 321.2 287 56.4
ECA240G1764 Erigeron canadensis HOM05D004971 ORTHO05D006289 8.1e-86 321.2 293 55.6
Hund26242 Selenicereus undatus HOM05D004971 ORTHO05D006289 1.4e-85 320.5 286 55.2
Migut.J01131 Erythranthe guttata HOM05D004971 ORTHO05D006289 5.2e-85 318.5 265 59.2
Cc06_g10130 Coffea canephora HOM05D004971 ORTHO05D006289 2.6e-84 316.2 262 58.4
COL.COLO4_34800 Corchorus olitorius HOM05D004971 ORTHO05D006289 2.6e-84 316.2 243 59.7
Lsat_1_v5_gn_7_41360 Lactuca sativa HOM05D004971 ORTHO05D006289 5.8e-84 315.1 292 53.1
SGA_v2.0_scaffold20G09148 Striga asiatica HOM05D004971 ORTHO05D006289 5.8e-84 315.1 276 56.2
Cfa003218 Carpinus fangiana HOM05D001382 ORTHO05D001266 9.8e-84 314.3 222 67.1
Nn3g18146 Nelumbo nucifera HOM05D004971 ORTHO05D006289 1.3e-83 313.9 286 54.5
SGA_v2.0_scaffold22G09903 Striga asiatica HOM05D004971 ORTHO05D006289 2.9e-83 312.8 274 56.9
PSO675G4950 Papaver somniferum HOM05D004971 ORTHO05D006289 4.6e-81 305.4 282 54.3
PSO541G6366 Papaver somniferum HOM05D004971 ORTHO05D006289 7.8e-81 304.7 283 53.4
Peaxi162Scf00539g00614 Petunia axillaris HOM05D004971 ORTHO05D006289 1.0e-80 304.3 283 54.1
Aqoxy7G01513 Aquilegia oxysepala HOM05D004971 ORTHO05D006289 1.3e-80 303.9 285 51.9
Actinidia32663 Actinidia chinensis HOM05D004971 ORTHO05D006289 1.5e-79 300.4 273 55.7
PGSC0003DMG400021659 Solanum tuberosum HOM05D004971 ORTHO05D006289 1.9e-79 300.1 253 59.7
Ciclev10009268m.g Citrus clementina HOM05D004971 ORTHO05D006289 2.8e-78 296.2 289 52.6
Oeu017816.1 Olea europaea HOM05D004971 ORTHO05D006289 2.8e-78 296.2 241 61.4
CAN.G399.3 Capsicum annuum HOM05D004971 ORTHO05D006289 4.7e-78 295.4 248 58.1
CsaV3_1G020790 Cucumis sativus L. HOM05D004971 ORTHO05D006289 4.7e-78 295.4 268 54.1
Sed0000382 Sechium edule HOM05D004971 ORTHO05D006289 6.2e-78 295.0 252 56.7
unitig_748.g8739 Utricularia gibba HOM05D004971 ORTHO05D006289 4.0e-77 292.4 275 52.0
HanXRQChr03g0061421 Helianthus annuus HOM05D004971 ORTHO05D006289 5.2e-77 292.0 249 55.4
AUR62008451 Chenopodium quinoa HOM05D004971 ORTHO05D006289 6.8e-77 291.6 247 56.3
HPP92_012921 Vanilla planifolia HOM05D004971 ORTHO05D006289 1.2e-76 290.8 289 49.5
MELO3C024707.2 Cucumis melo HOM05D004971 ORTHO05D006289 2.0e-76 290.0 263 52.9
HPP92_012900 Vanilla planifolia HOM05D004971 ORTHO05D006289 3.4e-76 289.3 289 49.1
Lj7A659G31 Lonicera japonica HOM05D004971 ORTHO05D006289 7.6e-76 288.1 259 56.0
Os08g0540500 Oryza sativa ssp. japonica HOM05D004971 ORTHO05D006289 7.6e-76 288.1 260 50.0
Manes.16G112100 Manihot esculenta HOM05D004971 ORTHO05D006289 1.1e-74 284.3 213 64.3
SHI02711 Sapria himalayana HOM05D004971 ORTHO05D006289 2.7e-73 279.6 268 50.0
vmacro06238 Vaccinium macrocarpon HOM05D004971 ORTHO05D006289 6.0e-73 278.5 301 49.8
DCAR_028679 Daucus carota HOM05D004971 ORTHO05D006289 4.2e-66 255.8 277 49.5
Lalb_Chr14g0371731 Lupinus albus HOM05D004971 ORTHO05D006289 7.1e-66 255.0 279 49.8
AagrBONN_evm.TU.Sc2ySwM_117.3390 Anthoceros agrestis HOM05D004971 ORTHO05D006289 2.7e-65 253.1 272 47.8
CDE11G0552 Ceratophyllum demersum HOM05D004971 ORTHO05D006289 2.3e-64 250.0 266 47.0
Duzib150G1337 Durio zibethinus HOM05D004971 ORTHO05D006289 2.5e-63 246.5 193 61.1
Mapoly0002s0233 Marchantia polymorpha HOM05D004971 ORTHO05D006289 9.6e-63 244.6 323 41.8
SMO241G0030 Selaginella moellendorffii HOM05D004971 ORTHO05D006289 1.3e-62 244.2 277 45.1
SMO232G0003 Selaginella moellendorffii HOM05D004971 ORTHO05D006289 3.6e-62 242.7 278 44.6
SEGI_33858 Sequoiadendron giganteum HOM05D004971 ORTHO05D006289 3.1e-61 239.6 351 38.2
CSS0049746 Camellia sinensis var. sinensis HOM05D004971 ORTHO05D006289 2.9e-59 233.0 197 58.4
Thhalv10006518m.g Eutrema salsugineum HOM05D004971 ORTHO05D006289 1.9e-58 230.3 216 53.7
Thhalv10027230m.g Eutrema salsugineum HOM05D004971 ORTHO05D006289 1.9e-58 230.3 216 53.7
Nitab4.5_0002165g0080 Nicotiana tabacum HOM05D004971 ORTHO05D006289 9.3e-58 228.0 284 44.7
Thhalv10027410m.g Eutrema salsugineum HOM05D004971 ORTHO05D006289 3.0e-56 223.0 216 53.7
Thhalv10026861m.g Eutrema salsugineum HOM05D004971 ORTHO05D006289 5.1e-56 222.2 216 53.7
Thhalv10027350m.g Eutrema salsugineum HOM05D004971 ORTHO05D006289 6.7e-56 221.9 222 50.5
MD02G1058100 Malus domestica HOM05D004971 ORTHO05D006289 6.2e-54 215.3 246 48.0
Pp3c17_15270 Physcomitrium patens HOM05D004971 ORTHO05D006289 3.4e-52 209.5 305 37.4
Lalb_Chr24g0397391 Lupinus albus HOM05D004971 ORTHO05D006289 1.6e-49 200.7 188 51.1
ATR0315G075 Amborella trichopoda HOM05D004971 ORTHO05D006289 1.4e-45 187.6 206 47.1
Ca_17315_v3 Cicer arietinum L. HOM05D004971 ORTHO05D006289 1.4e-42 177.6 179 53.1
CDE05G3470 Ceratophyllum demersum HOM05D004971 ORTHO05D006289 1.0e-40 171.4 123 64.2
Haze_02526 Corylus avellana HOM05D004971 ORTHO05D006289 6.7e-40 168.7 176 54.0
CBR_g687 Chara braunii HOM05D004971 ORTHO05D006289 2.5e-39 166.8 444 28.4
EL10Ac8g18422 Beta vulgaris HOM05D004971 ORTHO05D006289 8.2e-38 161.8 136 58.8
MCO09G154 Micromonas commoda HOM05D004971 ORTHO05D006289 9.0e-37 158.3 292 31.5
Haze_02523 Corylus avellana HOM05D004971 ORTHO05D006289 2.0e-36 157.1 165 54.5
Zm00001eb198370 Zea mays HOM05D004971 ORTHO05D006289 2.7e-33 146.7 158 45.6
PRCOL_00000240 Prasinoderma coloniale HOM05D004971 ORTHO05D006289 1.3e-32 144.4 319 29.5
Cre15.g636450 Chlamydomonas reinhardtii HOM05D004971 ORTHO05D006289 3.9e-32 142.9 387 27.9
MBI04_g02609_MAGBIO Magnolia biondii HOM05D004971 ORTHO05D000022 8.7e-32 141.7 354 30.5
Lj4g0009518 Lotus japonicus HOM05D004971 ORTHO05D006289 3.2e-26 123.2 76 69.7
arahy.Tifrunner.gnm1.ann1.D57MTL Arachis hypogaea HOM05D004971 ORTHO05D006289 7.4e-23 112.1 152 41.4
Lalb_Chr24g0397371 Lupinus albus HOM05D004971 ORTHO05D006289 1.8e-21 107.5 137 42.3
arahy.Tifrunner.gnm1.ann1.2J0XRF Arachis hypogaea HOM05D004971 ORTHO05D006289 6.9e-21 105.5 151 37.1
CSS0032398 Camellia sinensis var. sinensis HOM05D004971 ORTHO05D006289 9.1e-21 105.1 73 67.1
Cpa.g.sc40.24 Carica papaya HOM05D004971 ORTHO05D006289 1.7e-19 100.9 53 75.5
MBI19_g42779_MAGBIO Magnolia biondii HOM05D004971 ORTHO05D006289 8.5e-19 98.6 168 36.3
Nitab4.5_0002165g0090 Nicotiana tabacum HOM05D004971 ORTHO05D006289 1.2e-17 94.7 51 76.5
MBI19_g24589_MAGBIO Magnolia biondii HOM05D004971 ORTHO05D006289 5.2e-16 89.4 200 32.0
Actinidia07401 Actinidia chinensis HOM05D004971 ORTHO05D006289 1.3e-14 84.7 56 69.6
Nitab4.5_0001706g0070 Nicotiana tabacum HOM05D004971 ORTHO05D006289 4.5e-12 76.3 95 41.1
FvH4_7g02480 Fragaria vesca HOM05D004971 ORTHO05D022553 1.9e-10 70.9 38 78.9
FvH4_7g02600 Fragaria vesca HOM05D004971 ORTHO05D022553 1.9e-10 70.9 38 78.9
MD02G1058200 Malus domestica HOM05D004971 ORTHO05D006289 8.8e-08 62.0 43 76.7
Nitab4.5_0001706g0080 Nicotiana tabacum HOM05D004971 ORTHO05D006289 1.2e-07 61.6 29 86.2
CiPaw.05G218700 Carya illinoinensis HOM05D004971 ORTHO05D006289 2.8e-06 57.0 32 71.9
MBI19_g24592_MAGBIO Magnolia biondii HOM05D004971 ORTHO05D006289 4.8e-06 56.2 38 57.9
Haze_02522 Corylus avellana HOM05D004971 ORTHO05D006289 6.3e-06 55.8 87 36.8


User provided reference genes

Program Settings