Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.7G223800 Prunus persica HOM05D002733 ORTHO05D003856 2.6e-149 531.9 258 100.0
Prupe.7G223900 Prunus persica HOM05D002733 ORTHO05D003856 3.7e-127 458.4 259 85.7
Prupe.7G224000 Prunus persica HOM05D002733 ORTHO05D003856 1.7e-87 326.6 247 68.8
MD00G1107900 Malus domestica HOM05D002733 ORTHO05D003856 3.4e-72 275.8 255 59.6
MD02G1059300 Malus domestica HOM05D002733 ORTHO05D003856 2.1e-69 266.5 259 54.1
RcHm_v2.0_Chr2g0120751 Rosa chinensis HOM05D002733 ORTHO05D003856 1.3e-60 237.3 250 50.4
RcHm_v2.0_Chr7g0192641 Rosa chinensis HOM05D002733 ORTHO05D003856 3.5e-53 212.6 251 47.4
MD15G1316300 Malus domestica HOM05D002733 ORTHO05D003856 7.9e-53 211.5 148 67.6
FAN28G1642 Fragaria x ananassa HOM05D000949 ORTHO05D001276 1.1e-51 207.6 240 47.5
FvH4_1g24261 Fragaria vesca HOM05D002733 ORTHO05D003856 4.8e-50 202.2 232 47.4
FAN13G0375 Fragaria x ananassa HOM05D002733 ORTHO05D003856 8.2e-50 201.4 238 47.1
FAN26G1179 Fragaria x ananassa HOM05D002733 ORTHO05D003856 1.1e-49 201.1 237 46.4
FvH4_5g06160 Fragaria vesca HOM05D002733 ORTHO05D003856 1.8e-49 200.3 188 55.3
FAN18G0094 Fragaria x ananassa HOM05D002733 ORTHO05D003856 4.1e-49 199.1 188 55.3
FAN23G1126 Fragaria x ananassa HOM05D002733 ORTHO05D003856 1.5e-48 197.2 218 49.1
Cfa009897 Carpinus fangiana HOM05D002733 ORTHO05D003856 2.9e-47 193.0 235 45.5
FAN19G2118 Fragaria x ananassa HOM05D002733 ORTHO05D003856 3.8e-47 192.6 207 49.8
COL.COLO4_34789 Corchorus olitorius HOM05D002733 ORTHO05D003856 6.5e-47 191.8 218 47.2
Haze_23259 Corylus avellana HOM05D002733 ORTHO05D003856 6.5e-47 191.8 235 46.0
Potri.001G397100 Populus trichocarpa HOM05D002733 ORTHO05D003856 1.1e-46 191.0 246 44.7
FvH4_1g16231 Fragaria vesca HOM05D002733 ORTHO05D003856 2.7e-45 186.4 211 48.8
FAN23G1485 Fragaria x ananassa HOM05D002733 ORTHO05D003856 2.7e-45 186.4 157 58.6
Sabra16G0260100 Salix brachista HOM05D002733 ORTHO05D003856 6.1e-45 185.3 246 44.3
Manes.03G176000 Manihot esculenta HOM05D002733 ORTHO05D003856 3.0e-44 183.0 226 45.6
Manes.03G176200 Manihot esculenta HOM05D002733 ORTHO05D003856 3.9e-44 182.6 147 57.1
Duzib168G2229 Durio zibethinus HOM05D002733 ORTHO05D003856 8.7e-44 181.4 223 46.2
Thecc.09G104200 Theobroma cacao HOM05D002733 ORTHO05D003856 1.1e-43 181.0 220 45.5
Cpa.g.sc81.85 Carica papaya HOM05D002733 ORTHO05D003856 8.2e-42 174.9 224 45.1
CiPaw.03G015000 Carya illinoinensis HOM05D002733 ORTHO05D003856 2.4e-41 173.3 143 55.9
CiPaw.03G014700 Carya illinoinensis HOM05D002733 ORTHO05D003856 1.2e-40 171.0 161 50.9
CiPaw.03G015300 Carya illinoinensis HOM05D002733 ORTHO05D003856 2.6e-40 169.9 176 50.0
CiPaw.03G014800 Carya illinoinensis HOM05D002733 ORTHO05D003856 1.3e-39 167.5 145 55.2
Gorai.010G075000 Gossypium raimondii HOM05D002733 ORTHO05D003856 8.5e-39 164.9 188 47.9
Gohir.D06G064250 Gossypium hirsutum HOM05D002733 ORTHO05D003856 4.2e-38 162.5 188 47.3
Gohir.A06G065650 Gossypium hirsutum HOM05D002733 ORTHO05D003856 9.4e-38 161.4 188 47.3
Duzib213G0038 Durio zibethinus HOM05D002733 ORTHO05D003856 2.1e-37 160.2 235 40.0
CSS0001293 Camellia sinensis var. sinensis HOM05D002733 ORTHO05D003856 3.7e-34 149.4 138 50.0
Duzib213G1035 Durio zibethinus HOM05D002733 ORTHO05D003856 1.8e-33 147.1 223 39.9
QL02p042807 Quercus lobata HOM05D002733 ORTHO05D003856 1.7e-31 140.6 151 47.0
Thecc.07G171000 Theobroma cacao HOM05D002733 ORTHO05D003856 5.0e-31 139.0 178 41.6
QL02p042555 Quercus lobata HOM05D002733 ORTHO05D003856 8.5e-31 138.3 151 46.4
Lj3g0006952 Lotus japonicus HOM05D002733 ORTHO05D003856 2.5e-30 136.7 129 51.2
MELO3C004101.2 Cucumis melo HOM05D002733 ORTHO05D003856 4.2e-30 136.0 122 49.2
Sed0022151 Sechium edule HOM05D002733 ORTHO05D003856 7.2e-30 135.2 129 47.3
Actinidia09441 Actinidia chinensis HOM05D002733 ORTHO05D003856 1.8e-28 130.6 221 35.7
Ciclev10010395m.g Citrus clementina HOM05D002733 ORTHO05D003856 2.3e-28 130.2 143 46.2
CsaV3_3G004840 Cucumis sativus L. HOM05D002733 ORTHO05D003856 8.8e-28 128.3 121 45.5
Lj1g0000886 Lotus japonicus HOM05D002733 ORTHO05D003856 5.7e-27 125.6 124 47.6
TPR.G8024 Trifolium pratense HOM05D002733 ORTHO05D003856 5.7e-27 125.6 132 48.5
TPR.G12039 Trifolium pratense HOM05D002733 ORTHO05D003856 9.7e-27 124.8 132 48.5
Ciclev10007038m.g Citrus clementina HOM05D002733 ORTHO05D003856 1.3e-26 124.4 135 45.2
Actinidia20408 Actinidia chinensis HOM05D002733 ORTHO05D003856 2.2e-26 123.6 146 45.2
TPR.G1412 Trifolium pratense HOM05D002733 ORTHO05D003856 2.8e-26 123.2 131 44.3
TPR.G1447 Trifolium pratense HOM05D002733 ORTHO05D003856 2.8e-26 123.2 132 48.5
Eucgr.C01014 Eucalyptus grandis HOM05D002733 ORTHO05D003856 1.1e-25 121.3 132 47.0
TPR.G18869 Trifolium pratense HOM05D004715 ORTHO05D005644 4.1e-25 119.4 132 43.9
Cfa016245 Carpinus fangiana HOM05D002733 ORTHO05D003856 5.3e-25 119.0 126 45.2
CAN.G1774.3 Capsicum annuum HOM05D002733 ORTHO05D003856 2.0e-24 117.1 126 49.2
TPR.G1395 Trifolium pratense HOM05D002733 ORTHO05D003856 2.0e-24 117.1 130 46.9
Cfa016244 Carpinus fangiana HOM05D002733 ORTHO05D003856 2.6e-24 116.7 125 44.8
Haze_00185 Corylus avellana HOM05D002733 ORTHO05D003856 2.6e-24 116.7 129 42.6
DCAR_003269 Daucus carota HOM05D002733 ORTHO05D003856 2.6e-24 116.7 125 48.8
Hma1.2p1_1080F.1_g255020 Hydrangea macrophylla HOM05D002733 ORTHO05D003856 2.6e-24 116.7 166 39.2
Peaxi162Scf00023g00136 Petunia axillaris HOM05D002733 ORTHO05D003856 2.6e-24 116.7 143 39.9
Rhsim05G0042200 Rhododendron simsii HOM05D002733 ORTHO05D003856 2.6e-24 116.7 153 39.2
Sabra08G0161200 Salix brachista HOM05D002733 ORTHO05D003856 3.5e-24 116.3 211 36.0
Prupe.7G224100 Prunus persica HOM05D002733 ORTHO05D003856 4.5e-24 115.9 184 40.8
DCAR_028226 Daucus carota HOM05D002733 ORTHO05D003856 7.7e-24 115.2 126 43.7
CiPaw.03G015100 Carya illinoinensis HOM05D002733 ORTHO05D003856 1.3e-23 114.4 157 43.3
Nitab4.5_0000316g0140 Nicotiana tabacum HOM05D002733 ORTHO05D003856 1.3e-23 114.4 148 39.9
C03p26740 Brassica napus HOM05D002733 ORTHO05D003856 3.8e-23 112.8 223 33.6
BolC3t15059H Brassica oleracea HOM05D002733 ORTHO05D003856 3.8e-23 112.8 223 33.6
Haze_00196 Corylus avellana HOM05D002733 ORTHO05D003856 3.8e-23 112.8 126 44.4
PGSC0003DMG400000368 Solanum tuberosum HOM05D002733 ORTHO05D003856 3.8e-23 112.8 224 37.1
AL7G49890 Arabidopsis lyrata HOM05D002733 ORTHO05D003856 5.0e-23 112.5 118 44.9
AL8G24310 Arabidopsis lyrata HOM05D002733 ORTHO05D003856 6.5e-23 112.1 116 45.7
BcaC01g05431 Brassica carinata HOM05D002733 ORTHO05D003856 6.5e-23 112.1 222 33.3
Medtr3g013820 Medicago truncatula HOM05D002733 ORTHO05D003856 6.5e-23 112.1 142 42.3
Medtr3g013810 Medicago truncatula HOM05D002733 ORTHO05D003856 1.1e-22 111.3 142 42.3
Sed0027145 Sechium edule HOM05D002733 ORTHO05D003856 1.5e-22 110.9 122 43.4
Medtr0267s0030 Medicago truncatula HOM05D002733 ORTHO05D003856 1.9e-22 110.5 142 41.5
Medtr3g013900 Medicago truncatula HOM05D002733 ORTHO05D003856 2.5e-22 110.2 142 41.5
Medtr3g013920 Medicago truncatula HOM05D002733 ORTHO05D003856 2.5e-22 110.2 142 41.5
Nitab4.5_0001888g0040 Nicotiana tabacum HOM05D002733 ORTHO05D003856 2.5e-22 110.2 148 39.2
Phvul.005G031300 Phaseolus vulgaris HOM05D002733 ORTHO05D003856 2.5e-22 110.2 152 36.8
AT4G03170 Arabidopsis thaliana HOM05D002733 ORTHO05D003856 3.2e-22 109.8 110 48.2
Glyma.04G133200 Glycine max HOM05D002733 ORTHO05D003856 3.2e-22 109.8 128 41.4
Eucgr.L02178 Eucalyptus grandis HOM05D002733 ORTHO05D003856 5.5e-22 109.0 125 43.2
Peaxi162Scf00665g00126 Petunia axillaris HOM05D002733 ORTHO05D003856 5.5e-22 109.0 203 36.9
A04p30010 Brassica napus HOM05D002733 ORTHO05D003856 9.4e-22 108.2 199 34.2
BraA04t18506Z Brassica rapa HOM05D002733 ORTHO05D003856 9.4e-22 108.2 199 34.2
Peaxi162Scf00665g00148 Petunia axillaris HOM05D002733 ORTHO05D003856 2.1e-21 107.1 129 46.5
Sp4g22050 Schrenkiella parvula HOM05D002733 ORTHO05D003856 3.6e-21 106.3 141 41.8
BcaC02g07356 Brassica carinata HOM05D002733 ORTHO05D003856 4.7e-21 105.9 124 41.9
Sopen12g003260 Solanum pennellii HOM05D002733 ORTHO05D003856 4.7e-21 105.9 227 34.8
VMungo1080G0152 Vigna mungo HOM05D002733 ORTHO05D003856 4.7e-21 105.9 133 38.3
BolC4t28286H Brassica oleracea HOM05D002733 ORTHO05D003856 6.1e-21 105.5 124 41.9
DCAR_014131 Daucus carota HOM05D002733 ORTHO05D003856 8.0e-21 105.1 134 41.0
Solyc12g007300.1 Solanum lycopersicum HOM05D002733 ORTHO05D003856 1.4e-20 104.4 225 33.8
Sp4g22450 Schrenkiella parvula HOM05D002733 ORTHO05D003856 1.8e-20 104.0 124 43.5
Sp5g18240 Schrenkiella parvula HOM05D002733 ORTHO05D003856 2.3e-20 103.6 124 43.5
C03p26370 Brassica napus HOM05D002733 ORTHO05D003856 5.2e-20 102.4 141 40.4
THA.LOC104810048 Tarenaya hassleriana HOM05D002733 ORTHO05D003856 5.2e-20 102.4 188 34.6
BolC3t15022H Brassica oleracea HOM05D002733 ORTHO05D003856 6.7e-20 102.1 141 39.7
QL01p018935 Quercus lobata HOM05D002733 ORTHO05D003856 1.1e-19 101.3 184 38.6
A05p06330 Brassica napus HOM05D002733 ORTHO05D003856 2.0e-19 100.5 146 40.4
BraA03t11459Z Brassica rapa HOM05D002733 ORTHO05D003856 2.0e-19 100.5 141 40.4
BcaC02g12127 Brassica carinata HOM05D002733 ORTHO05D003856 3.3e-19 99.8 146 40.4
C04p07280 Brassica napus HOM05D002733 ORTHO05D003856 3.3e-19 99.8 146 40.4
BolC4t22351H Brassica oleracea HOM05D002733 ORTHO05D003856 3.3e-19 99.8 146 40.4
CARHR135120 Cardamine hirsuta HOM05D002733 ORTHO05D003856 3.3e-19 99.8 153 37.3
A03p22270 Brassica napus HOM05D002733 ORTHO05D003856 4.4e-19 99.4 141 40.4
QL01p018928 Quercus lobata HOM05D002733 ORTHO05D003856 4.4e-19 99.4 183 36.6
BcaB02g09048 Brassica carinata HOM05D002733 ORTHO05D003856 5.7e-19 99.0 148 37.8
Haze_00197 Corylus avellana HOM05D002733 ORTHO05D003856 5.7e-19 99.0 116 43.1
VMungo1080G0686 Vigna mungo HOM05D002733 ORTHO05D003856 1.3e-18 97.8 129 38.0
Sed0017653 Sechium edule HOM05D002733 ORTHO05D003856 2.2e-18 97.1 126 40.5
BraA05t19601Z Brassica rapa HOM05D002733 ORTHO05D003856 3.7e-18 96.3 146 40.4
MD02G1060300 Malus domestica HOM05D002733 ORTHO05D003856 1.1e-17 94.7 116 41.4
AL4G37790 Arabidopsis lyrata HOM05D002733 ORTHO05D003856 1.4e-17 94.4 118 40.7
BcaB06g29131 Brassica carinata HOM05D002733 ORTHO05D003856 2.4e-17 93.6 240 29.6
Carub.0003s2754 Capsella rubella HOM05D002733 ORTHO05D003856 3.1e-17 93.2 117 41.0
FAN28G2808 Fragaria x ananassa HOM05D002733 ORTHO05D003856 3.1e-17 93.2 81 55.6
PGSC0003DMG400000371 Solanum tuberosum HOM05D002733 ORTHO05D003856 3.1e-17 93.2 129 38.0
Carub.0004s2232 Capsella rubella HOM05D002733 ORTHO05D003856 4.1e-17 92.8 135 37.8
Dinv41650 Davidia involucrata HOM05D002733 ORTHO05D003856 7.0e-17 92.0 107 48.6
Peaxi162Scf00665g00139 Petunia axillaris HOM05D002733 ORTHO05D003856 7.0e-17 92.0 175 34.9
AT4G03160 Arabidopsis thaliana HOM05D002733 ORTHO05D003856 9.1e-17 91.7 117 40.2
Aa31LG7G1600 Aethionema arabicum HOM05D002733 ORTHO05D003856 1.6e-16 90.9 124 41.1
DCAR_003268 Daucus carota HOM05D002733 ORTHO05D003856 1.6e-16 90.9 222 30.2
Thhalv10017517m.g Eutrema salsugineum HOM05D002733 ORTHO05D003856 4.5e-16 89.4 155 32.9
COL.COLO4_32232 Corchorus olitorius HOM05D002733 ORTHO05D003856 5.9e-16 89.0 134 40.3
Phvul.005G028900 Phaseolus vulgaris HOM05D002733 ORTHO05D003856 5.9e-16 89.0 154 33.1
Aqoxy1G01499 Aquilegia oxysepala HOM05D002733 ORTHO05D003856 2.2e-15 87.0 126 38.9
Aqoxy7G01497 Aquilegia oxysepala HOM05D002733 ORTHO05D003856 2.9e-15 86.7 136 40.4
FAN19G0693 Fragaria x ananassa HOM05D002733 ORTHO05D003856 5.0e-15 85.9 66 57.6
Dinv07992 Davidia involucrata HOM05D002733 ORTHO05D003856 1.1e-14 84.7 105 49.5
TPR.G22027 Trifolium pratense HOM05D002733 ORTHO05D003856 2.5e-14 83.6 93 44.1
Aa31LG7G1520 Aethionema arabicum HOM05D002733 ORTHO05D003856 3.2e-14 83.2 142 32.4
Aa31LG8G17220 Aethionema arabicum HOM05D002733 ORTHO05D003856 3.2e-14 83.2 140 35.0
QL01p018939 Quercus lobata HOM05D002733 ORTHO05D003856 4.2e-14 82.8 185 34.6
Aa31LG8G11380 Aethionema arabicum HOM05D002733 ORTHO05D003856 1.2e-13 81.3 201 29.9
AT1G20600 Arabidopsis thaliana HOM05D002733 ORTHO05D003856 6.1e-13 79.0 93 43.0
Aa31LG3G6410 Aethionema arabicum HOM05D002733 ORTHO05D003856 1.0e-12 78.2 144 34.0
Nitab4.5_0005564g0030 Nicotiana tabacum HOM05D002733 ORTHO05D003856 1.4e-12 77.8 109 38.5
PSO566G0305 Papaver somniferum HOM05D002733 ORTHO05D003856 2.3e-12 77.0 105 36.2
A05p06630 Brassica napus HOM05D010480 ORTHO05D003856 3.0e-12 76.6 149 34.9
BraA05t19630Z Brassica rapa HOM05D010480 ORTHO05D003856 3.0e-12 76.6 149 34.9
BcaC01g05470 Brassica carinata HOM05D002733 ORTHO05D003856 4.0e-12 76.3 121 36.4
A05p06650 Brassica napus HOM05D010480 ORTHO05D003856 4.0e-12 76.3 146 33.6
BraA05t19631Z Brassica rapa HOM05D010480 ORTHO05D003856 4.0e-12 76.3 146 33.6
Sp4g22040 Schrenkiella parvula HOM05D010480 ORTHO05D003856 5.2e-12 75.9 141 32.6
Dinv26718 Davidia involucrata HOM05D002733 ORTHO05D003856 8.8e-12 75.1 92 48.9
PSO782G1409 Papaver somniferum HOM05D002733 ORTHO05D003856 8.8e-12 75.1 107 39.3
Aa31LG8G17190 Aethionema arabicum HOM05D002733 ORTHO05D003856 1.5e-11 74.3 110 36.4
C04p07760 Brassica napus HOM05D010480 ORTHO05D003856 2.0e-11 73.9 213 29.6
BolC4t22393H Brassica oleracea HOM05D010480 ORTHO05D003856 2.0e-11 73.9 213 29.6
BcaC02g12110 Brassica carinata HOM05D010480 ORTHO05D003856 9.8e-11 71.6 215 28.4
BcaC02g12108 Brassica carinata HOM05D010480 ORTHO05D003856 2.2e-10 70.5 152 32.2
C04p07780 Brassica napus HOM05D010480 ORTHO05D003856 2.2e-10 70.5 152 32.2
BolC4t22395H Brassica oleracea HOM05D010480 ORTHO05D003856 2.2e-10 70.5 153 32.0
Aa31LG8G17200 Aethionema arabicum HOM05D002733 ORTHO05D003856 3.7e-10 69.7 124 33.9
BcaC02g12109 Brassica carinata HOM05D010480 ORTHO05D003856 8.3e-10 68.6 164 29.3
BolC4t22394H Brassica oleracea HOM05D010480 ORTHO05D003856 8.3e-10 68.6 164 29.3
Phvul.004G029250 Phaseolus vulgaris HOM05D022012 ORTHO05D003856 1.1e-09 68.2 123 32.5
C04p07770 Brassica napus HOM05D010480 ORTHO05D003856 1.4e-09 67.8 166 28.9
BolC3t19780H Brassica oleracea HOM05D010480 ORTHO05D003856 1.4e-09 67.8 126 34.1
BraA05t19632Z Brassica rapa HOM05D010480 ORTHO05D003856 1.8e-09 67.4 152 30.9
Aa31LG8G17150 Aethionema arabicum HOM05D002733 ORTHO05D003856 3.1e-09 66.6 97 36.1
A05p06660 Brassica napus HOM05D010480 ORTHO05D003856 7.0e-09 65.5 152 30.3
Thhalv10003384m.g Eutrema salsugineum HOM05D002733 ORTHO05D003856 9.1e-09 65.1 112 33.9
BcaB02g09089 Brassica carinata HOM05D010480 ORTHO05D003856 1.6e-08 64.3 151 29.8
ATR1159G057 Amborella trichopoda HOM05D020218 ORTHO05D013427 7.7e-08 62.0 108 32.4
CARHR135110 Cardamine hirsuta HOM05D002733 ORTHO05D003856 1.0e-07 61.6 97 37.1
Nitab4.5_0001004g0110 Nicotiana tabacum HOM05D002733 ORTHO05D003856 8.5e-07 58.5 69 46.4
VMungo0464G0934 Vigna mungo HOM05D022012 ORTHO05D003856 8.5e-07 58.5 162 28.4
Aqoxy2G03580 Aquilegia oxysepala HOM05D002733 ORTHO05D003856 1.9e-06 57.4 70 38.6
Phvul.004G169500 Phaseolus vulgaris HOM05D022012 ORTHO05D003856 1.9e-06 57.4 115 32.2
Aa31LG7G1580 Aethionema arabicum HOM05D002733 ORTHO05D003856 7.2e-06 55.5 82 40.2


User provided reference genes

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