Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.7G222100 Prunus persica HOM05D004175 ORTHO05D004664 2.5e-147 525.8 340 100.0
MD02G1060900 Malus domestica HOM05D004175 ORTHO05D004664 1.7e-108 396.7 340 77.4
Thhalv10014089m.g Eutrema salsugineum HOM05D004175 ORTHO05D004664 6.9e-105 384.8 328 79.3
MD15G1194400 Malus domestica HOM05D004175 ORTHO05D004664 1.5e-104 383.6 340 76.8
Atru.chr7.1440 Acer truncatum HOM05D004175 ORTHO05D004664 5.8e-104 381.7 337 80.4
VMungo0251G2778 Vigna mungo HOM05D004175 ORTHO05D004664 5.8e-104 381.7 318 73.9
BolC9t58515H Brassica oleracea HOM05D004175 ORTHO05D004664 6.4e-103 378.3 328 79.3
Carub.0006s1803 Capsella rubella HOM05D004175 ORTHO05D004664 6.4e-103 378.3 328 79.0
BraA10t44078Z Brassica rapa HOM05D004175 ORTHO05D004664 1.4e-102 377.1 328 79.3
A10p20040 Brassica napus HOM05D004175 ORTHO05D004664 3.2e-102 375.9 328 79.3
CiPaw.03G226400 Carya illinoinensis HOM05D004175 ORTHO05D004664 3.2e-102 375.9 340 78.2
AT5G19680 Arabidopsis thaliana HOM05D004175 ORTHO05D004664 1.6e-101 373.6 328 78.4
BNapus_Darmor_BZH_scaffold_38p02220 Brassica napus HOM05D004175 ORTHO05D004664 1.0e-100 370.9 319 79.9
FAN28G2614 Fragaria x ananassa HOM05D004175 ORTHO05D004664 2.3e-100 369.8 342 79.5
BcaB05g23410 Brassica carinata HOM05D004175 ORTHO05D004664 3.9e-100 369.0 322 79.2
BcaC04g19365 Brassica carinata HOM05D004175 ORTHO05D004664 8.7e-100 367.9 328 78.0
C09p56500 Brassica napus HOM05D004175 ORTHO05D004664 8.7e-100 367.9 328 78.0
AL6G31190 Arabidopsis lyrata HOM05D004175 ORTHO05D004664 1.9e-99 366.7 328 77.7
Medtr8g102770 Medicago truncatula HOM05D004175 ORTHO05D004664 5.6e-99 365.2 319 71.8
CARHR193230 Cardamine hirsuta HOM05D004175 ORTHO05D004664 6.2e-98 361.7 328 76.8
Lj3g0019618 Lotus japonicus HOM05D004175 ORTHO05D004664 6.2e-98 361.7 315 75.6
FAN26G0873 Fragaria x ananassa HOM05D004175 ORTHO05D004664 2.0e-96 356.7 318 81.4
FAN26G2762 Fragaria x ananassa HOM05D004175 ORTHO05D004664 2.0e-96 356.7 318 81.4
Haze_25808 Corylus avellana HOM05D004175 ORTHO05D004664 5.8e-96 355.1 340 68.2
Aqoxy7G03896 Aquilegia oxysepala HOM05D004175 ORTHO05D004664 3.8e-95 352.4 319 75.5
FvH4_1g05880 Fragaria vesca HOM05D004175 ORTHO05D004664 3.8e-95 352.4 342 76.9
FAN23G2598 Fragaria x ananassa HOM05D004175 ORTHO05D004664 3.8e-95 352.4 342 77.2
TWI32G1108 Tripterygium wilfordii HOM05D004175 ORTHO05D004664 8.4e-95 351.3 322 78.6
Ciclev10008855m.g Citrus clementina HOM05D004175 ORTHO05D004664 1.9e-94 350.1 336 69.6
Dinv36699 Davidia involucrata HOM05D004175 ORTHO05D004664 2.4e-94 349.7 331 74.9
Phvul.002G310000 Phaseolus vulgaris HOM05D004175 ORTHO05D004664 2.1e-93 346.7 318 70.4
Hund09241 Selenicereus undatus HOM05D004175 ORTHO05D004664 3.5e-93 345.9 324 67.3
Cc06_g10300 Coffea canephora HOM05D004175 ORTHO05D004664 7.9e-93 344.7 323 74.3
Sp6g24700 Schrenkiella parvula HOM05D004175 ORTHO05D004664 1.3e-92 344.0 328 75.3
Gohir.A13G195800 Gossypium hirsutum HOM05D004175 ORTHO05D004664 2.3e-92 343.2 341 74.8
Lsat_1_v5_gn_5_143861 Lactuca sativa HOM05D004175 ORTHO05D004664 5.1e-92 342.0 328 74.1
DCAR_012049 Daucus carota HOM05D004175 ORTHO05D004664 8.7e-92 341.3 318 75.2
CANSAT56G2035 Cannabis sativa HOM05D004175 ORTHO05D004664 1.5e-91 340.5 340 68.2
Thecc.09G102700 Theobroma cacao HOM05D004175 ORTHO05D004664 1.9e-91 340.1 341 74.5
BcaC03g13699 Brassica carinata HOM05D004175 ORTHO05D004664 1.6e-90 337.0 319 76.8
AUR62010918 Chenopodium quinoa HOM05D004175 ORTHO05D004664 1.1e-89 334.3 303 78.2
Gohir.D13G201000 Gossypium hirsutum HOM05D004175 ORTHO05D004664 1.8e-89 333.6 340 72.6
Manes.16G110500 Manihot esculenta HOM05D004175 ORTHO05D004664 1.8e-89 333.6 332 73.5
BraA02t05525Z Brassica rapa HOM05D004175 ORTHO05D004664 3.1e-89 332.8 319 75.5
Ca_17354_v3 Cicer arietinum L. HOM05D004175 ORTHO05D004664 3.1e-89 332.8 315 69.5
Ca_29618_v3 Cicer arietinum L. HOM05D004175 ORTHO05D004664 3.1e-89 332.8 315 69.5
BcaC04g19363 Brassica carinata HOM05D004175 ORTHO05D004664 6.9e-89 331.6 302 78.5
Glyma.08G034700 Glycine max HOM05D004175 ORTHO05D004664 9.0e-89 331.3 318 67.9
A02p05730 Brassica napus HOM05D004175 ORTHO05D004664 1.2e-88 330.9 319 74.9
Duzib187G1630 Durio zibethinus HOM05D004175 ORTHO05D004664 2.6e-88 329.7 341 72.4
Cfa003199 Carpinus fangiana HOM05D004175 ORTHO05D004664 3.4e-88 329.3 340 65.3
Lalb_Chr05g0223141 Lupinus albus HOM05D004175 ORTHO05D004664 4.5e-88 328.9 318 68.2
Sed0003540 Sechium edule HOM05D004175 ORTHO05D004664 5.8e-88 328.6 322 75.2
GSVIVG01015319001 Vitis vinifera HOM05D004175 ORTHO05D004664 2.2e-87 326.6 341 72.4
QL02p042164 Quercus lobata HOM05D004175 ORTHO05D004664 8.4e-87 324.7 311 69.1
ClCG11G002240 Citrullus lanatus HOM05D004175 ORTHO05D004664 1.1e-86 324.3 346 59.0
CsaV3_2G001990 Cucumis sativus L. HOM05D004175 ORTHO05D004664 1.1e-86 324.3 329 73.3
RcHm_v2.0_Chr2g0091541 Rosa chinensis HOM05D004175 ORTHO05D004664 1.4e-86 323.9 327 74.3
CAN.G274.4 Capsicum annuum HOM05D004175 ORTHO05D004664 4.2e-86 322.4 319 67.1
MELO3C004581.2 Cucumis melo HOM05D004175 ORTHO05D004664 4.2e-86 322.4 329 72.9
Gohir.A06G066500 Gossypium hirsutum HOM05D004175 ORTHO05D004664 5.5e-86 322.0 338 69.5
SGA_v2.0_scaffold10G05161 Striga asiatica HOM05D004175 ORTHO05D004664 7.1e-86 321.6 321 72.6
HanXRQChr10g0318361 Helianthus annuus HOM05D004175 ORTHO05D004664 1.6e-85 320.5 328 71.0
BcaC04g19364 Brassica carinata HOM05D004175 ORTHO05D004664 2.7e-85 319.7 239 82.0
Gohir.D06G065000 Gossypium hirsutum HOM05D004175 ORTHO05D004664 3.5e-85 319.3 333 67.9
THA.LOC104811087 Tarenaya hassleriana HOM05D004175 ORTHO05D004664 2.3e-84 316.6 344 69.2
PSO210G6864 Papaver somniferum HOM05D004175 ORTHO05D004664 3.0e-84 316.2 326 63.8
Potri.006G163900 Populus trichocarpa HOM05D004175 ORTHO05D004664 3.0e-84 316.2 340 70.9
Aa31LG1G8760 Aethionema arabicum HOM05D004175 ORTHO05D004664 5.1e-84 315.5 329 69.9
Oeu000358.1 Olea europaea HOM05D004175 ORTHO05D004664 6.7e-84 315.1 344 69.8
TAR383G0226 Trochodendron aralioides HOM05D004175 ORTHO05D004664 6.7e-84 315.1 331 63.7
RcHm_v2.0_Chr2g0091621 Rosa chinensis HOM05D004175 ORTHO05D004664 8.7e-84 314.7 317 77.0
CAN.G525.1 Capsicum annuum HOM05D004175 ORTHO05D004664 1.1e-83 314.3 319 73.0
Glyma.05G227700 Glycine max HOM05D004175 ORTHO05D004664 1.1e-83 314.3 318 65.4
CSS0007429 Camellia sinensis var. sinensis HOM05D004175 ORTHO05D004664 1.5e-83 313.9 344 63.4
CSS0045871 Camellia sinensis var. sinensis HOM05D004175 ORTHO05D004664 1.5e-83 313.9 344 63.4
Sopen05g014800 Solanum pennellii HOM05D004175 ORTHO05D004664 1.5e-83 313.9 330 65.2
Eucgr.C03782 Eucalyptus grandis HOM05D004175 ORTHO05D004664 5.7e-83 312.0 327 69.1
arahy.Tifrunner.gnm1.ann1.2Q2DTK Arachis hypogaea HOM05D004175 ORTHO05D004664 1.3e-82 310.8 327 67.6
PSO210G7624 Papaver somniferum HOM05D004175 ORTHO05D004664 1.3e-82 310.8 326 66.3
Solyc05g018150.3 Solanum lycopersicum HOM05D004175 ORTHO05D004664 1.3e-82 310.8 330 64.8
Actinidia09442 Actinidia chinensis HOM05D001936 ORTHO05D002296 1.6e-82 310.5 328 72.3
vmacro10860 Vaccinium macrocarpon HOM05D004175 ORTHO05D004664 3.7e-82 309.3 338 69.2
arahy.Tifrunner.gnm1.ann1.5M1SBB Arachis hypogaea HOM05D004175 ORTHO05D004664 4.8e-82 308.9 349 66.5
Peaxi162Scf00001g00131 Petunia axillaris HOM05D004175 ORTHO05D004664 6.2e-82 308.5 318 67.3
ATR0705G211 Amborella trichopoda HOM05D004175 ORTHO05D004664 2.4e-81 306.6 314 72.6
Nn2g11614 Nelumbo nucifera HOM05D004175 ORTHO05D004664 1.7e-79 300.4 329 68.7
Cpa.g.sc40.51 Carica papaya HOM05D004175 ORTHO05D004664 8.4e-79 298.1 313 73.8
FAN19G1571 Fragaria x ananassa HOM05D004175 ORTHO05D004664 8.4e-79 298.1 342 62.9
SGA_v2.0_scaffold62G21556 Striga asiatica HOM05D004175 ORTHO05D004664 8.4e-79 298.1 324 64.2
ECA247G2452 Erigeron canadensis HOM05D004175 ORTHO05D004664 3.2e-78 296.2 293 75.1
Oeu017825.1 Olea europaea HOM05D004175 ORTHO05D004664 5.5e-78 295.4 341 67.4
Gorai.010G076100 Gossypium raimondii HOM05D004175 ORTHO05D004664 1.2e-77 294.3 333 64.3
Potri.018G086200 Populus trichocarpa HOM05D004175 ORTHO05D004664 1.2e-77 294.3 310 73.5
Ah.14g083210 Amaranthus hybridus HOM05D004175 ORTHO05D004664 2.1e-77 293.5 318 70.1
Psat7g016360 Pisum sativum HOM05D004175 ORTHO05D004664 2.1e-77 293.5 318 64.5
Hund26252 Selenicereus undatus HOM05D004175 ORTHO05D004664 4.6e-77 292.4 344 65.7
Gorai.013G229800 Gossypium raimondii HOM05D004175 ORTHO05D004664 1.3e-76 290.8 313 71.9
Migut.J01107 Erythranthe guttata HOM05D004175 ORTHO05D004664 3.0e-76 289.7 322 68.0
Sabra18G0074500 Salix brachista HOM05D004175 ORTHO05D004664 5.1e-76 288.9 314 72.9
MSTRG.6019 Avicennia marina HOM05D004175 ORTHO05D004664 8.7e-76 288.1 322 68.3
Nn8g39121 Nelumbo nucifera HOM05D004175 ORTHO05D004664 1.5e-75 287.3 315 70.2
SHI11434 Sapria himalayana HOM05D004175 ORTHO05D004664 1.5e-75 287.3 344 57.8
Sc08g0007900 Simmondsia chinensis HOM05D004175 ORTHO05D004664 1.5e-75 287.3 323 62.5
ECA234G4006 Erigeron canadensis HOM05D004175 ORTHO05D004664 4.3e-75 285.8 333 66.4
Zm00001eb204970 Zea mays HOM05D004175 ORTHO05D004664 1.6e-74 283.9 310 69.7
BcaC01g02078 Brassica carinata HOM05D004175 ORTHO05D004664 3.7e-74 282.7 217 74.2
Rhsim05G0041300 Rhododendron simsii HOM05D004175 ORTHO05D004664 6.3e-74 282.0 314 63.7
CDE02G1631 Ceratophyllum demersum HOM05D004175 ORTHO05D004664 3.1e-73 279.6 328 66.2
TPR.G23501 Trifolium pratense HOM05D004175 ORTHO05D004664 2.6e-72 276.6 318 62.9
MBI04_g40471_MAGBIO Magnolia biondii HOM05D004175 ORTHO05D004664 2.2e-71 273.5 293 73.0
Duzib168G0201 Durio zibethinus HOM05D004175 ORTHO05D004664 6.5e-71 271.9 244 66.0
C05p31230 Brassica napus HOM05D004175 ORTHO05D004664 1.1e-67 261.2 189 73.0
C03p72980 Brassica napus HOM05D004175 ORTHO05D004664 4.3e-67 259.2 189 72.0
Os02g0230100 Oryza sativa ssp. japonica HOM05D004175 ORTHO05D004664 4.3e-67 259.2 310 65.5
BolC2t08664H Brassica oleracea HOM05D004175 ORTHO05D004664 4.1e-65 252.7 231 64.5
unitig_26.g8970 Utricularia gibba HOM05D004175 ORTHO05D004664 1.5e-64 250.8 321 58.6
COL.COLO4_34774 Corchorus olitorius HOM05D004175 ORTHO05D004664 1.7e-63 247.3 174 78.2
C02p31840 Brassica napus HOM05D004175 ORTHO05D004664 1.4e-62 244.2 233 70.4
SEGI_33191 Sequoiadendron giganteum HOM05D004175 ORTHO05D004664 5.5e-62 242.3 328 61.0
C09p49510 Brassica napus HOM05D004175 ORTHO05D004664 1.8e-60 237.3 219 73.1
C07p36980 Brassica napus HOM05D004175 ORTHO05D004664 2.3e-60 236.9 221 71.5
EL10Ac8g18403 Beta vulgaris HOM05D004175 ORTHO05D004664 3.0e-60 236.5 296 66.2
Lalb_Chr09g0331471 Lupinus albus HOM05D004175 ORTHO05D004664 3.9e-60 236.1 314 59.6
Mapoly0051s0012 Marchantia polymorpha HOM05D004175 ORTHO05D004664 2.4e-57 226.9 331 57.1
C03p57560 Brassica napus HOM05D004175 ORTHO05D004664 1.5e-56 224.2 189 66.1
BcaC03g15042 Brassica carinata HOM05D004175 ORTHO05D004664 1.7e-55 220.7 185 77.3
C04p04320 Brassica napus HOM05D004175 ORTHO05D004664 1.7e-55 220.7 185 71.4
C01p01530 Brassica napus HOM05D004175 ORTHO05D004664 5.0e-55 219.2 150 76.0
BolC3t18031H Brassica oleracea HOM05D004175 ORTHO05D004664 2.1e-53 213.8 168 69.6
Pp3c1_38690 Physcomitrium patens HOM05D004175 ORTHO05D004664 1.0e-52 211.5 308 50.0
BcaC06g33783 Brassica carinata HOM05D004175 ORTHO05D004664 1.4e-52 211.1 188 75.0
BcaC01g02978 Brassica carinata HOM05D004175 ORTHO05D004664 1.8e-52 210.7 218 61.9
SMO337G0008 Selaginella moellendorffii HOM05D004175 ORTHO05D004664 8.2e-50 201.8 308 57.1
AagrBONN_evm.TU.Sc2ySwM_117.1201 Anthoceros agrestis HOM05D004175 ORTHO05D004664 7.7e-48 195.3 335 49.0
BolC3t19136H Brassica oleracea HOM05D004175 ORTHO05D004664 6.5e-47 192.2 152 74.3
Gorai.001G184800 Gossypium raimondii HOM05D004175 ORTHO05D004664 1.0e-44 184.9 159 64.8
Pp3c2_9120 Physcomitrium patens HOM05D004175 ORTHO05D004664 2.3e-44 183.7 327 44.6
Nitab4.5_0000012g0030 Nicotiana tabacum HOM05D004175 ORTHO05D004664 2.8e-42 176.8 167 61.1
CBR_g36965 Chara braunii HOM05D004175 ORTHO05D004664 1.1e-41 174.9 324 50.6
MBI04_g06580_MAGBIO Magnolia biondii HOM05D004175 ORTHO05D004664 1.4e-41 174.5 126 73.0
BolC7t44210H Brassica oleracea HOM05D004175 ORTHO05D004664 1.8e-41 174.1 130 71.5
Lj7A662T62 Lonicera japonica HOM05D004175 ORTHO05D004664 5.4e-41 172.6 212 75.0
MD03G1179500 Malus domestica HOM05D004175 ORTHO05D004664 4.5e-40 169.5 180 58.3
Nitab4.5_0003199g0020 Nicotiana tabacum HOM05D004175 ORTHO05D004664 2.9e-39 166.8 158 60.8
A07p01400 Brassica napus HOM05D004175 ORTHO05D004664 2.3e-36 157.1 160 57.5
Glyma.08G276800 Glycine max HOM05D004175 ORTHO05D004664 9.8e-35 151.8 157 58.6
Gorai.009G408400 Gossypium raimondii HOM05D004175 ORTHO05D004664 3.7e-34 149.8 207 66.2
Gohir.D04G104800 Gossypium hirsutum HOM05D004175 ORTHO05D004664 2.7e-32 143.7 183 71.0
BraA03t14262Z Brassica rapa HOM05D004175 ORTHO05D004664 1.5e-30 137.9 154 54.5
FAN10G3778 Fragaria x ananassa HOM05D004175 ORTHO05D004664 6.8e-28 129.0 94 74.5
FAN10G1780 Fragaria x ananassa HOM05D004175 ORTHO05D004664 7.5e-27 125.6 94 72.3
FAN10G3383 Fragaria x ananassa HOM05D004175 ORTHO05D004664 7.5e-27 125.6 94 72.3
FAN10G2625 Fragaria x ananassa HOM05D004175 ORTHO05D004664 1.2e-24 118.2 87 73.6
Cre05.g234655 Chlamydomonas reinhardtii HOM05D004175 ORTHO05D004664 3.1e-20 103.6 147 43.5
FAN28G1141 Fragaria x ananassa HOM05D004175 ORTHO05D004664 4.0e-20 103.2 87 67.8
COL.COLO4_34775 Corchorus olitorius HOM05D004175 ORTHO05D004664 5.8e-19 99.4 96 56.2
FAN18G1628 Fragaria x ananassa HOM05D005966 ORTHO05D007584 4.9e-18 96.3 67 74.6
FvH4_5g23601 Fragaria vesca HOM05D004175 ORTHO05D045656 2.4e-17 94.0 67 73.1
C03p68800 Brassica napus HOM05D004175 ORTHO05D004664 1.7e-15 87.8 55 72.7
BolC9t58072H Brassica oleracea HOM05D004175 ORTHO05D004664 1.7e-15 87.8 96 47.9
MBI04_g44954_MAGBIO Magnolia biondii HOM05D004175 ORTHO05D004664 3.0e-15 87.0 163 52.8
C09p52070 Brassica napus HOM05D004175 ORTHO05D004664 1.6e-13 81.3 102 45.1
PRCOL_00004941 Prasinoderma coloniale HOM05D004175 ORTHO05D004664 4.7e-13 79.7 328 26.8
FAN20G2587 Fragaria x ananassa HOM05D000366 ORTHO05D000437 1.8e-12 77.8 61 67.2
FAN19G2726 Fragaria x ananassa HOM05D004175 ORTHO05D004664 1.2e-11 75.1 62 66.1
FvH4_3g18060 Fragaria vesca HOM05D004175 ORTHO05D004664 1.7e-10 71.2 78 55.1
BolC4t22068H Brassica oleracea HOM05D004175 ORTHO05D004664 1.4e-09 68.2 40 75.0
HPP92_002875 Vanilla planifolia HOM05D004175 ORTHO05D004664 5.6e-06 56.2 82 41.5


User provided reference genes

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