Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.7G221600 Prunus persica HOM05D009800 ORTHO05D011618 7.4e-193 677.2 377 100.0
RcHm_v2.0_Chr2g0091571 Rosa chinensis HOM05D009800 ORTHO05D011618 2.5e-71 273.5 375 50.1
MD15G1194600 Malus domestica HOM05D009800 ORTHO05D011618 2.0e-65 253.8 297 55.2
FvH4_1g05950 Fragaria vesca HOM05D009800 ORTHO05D011618 1.4e-61 241.1 376 46.0
FAN26G1403 Fragaria x ananassa HOM05D009800 ORTHO05D011618 6.7e-61 238.8 376 45.7
FAN19G0069 Fragaria x ananassa HOM05D009800 ORTHO05D011618 7.5e-60 235.3 376 46.0
FAN28G1906 Fragaria x ananassa HOM05D009800 ORTHO05D011618 3.7e-59 233.0 376 44.4
MD02G1064100 Malus domestica HOM05D009800 ORTHO05D011618 8.2e-59 231.9 338 48.8
FAN26G2992 Fragaria x ananassa HOM05D009800 ORTHO05D011618 4.0e-53 213.0 376 42.8
FAN23G0260 Fragaria x ananassa HOM05D009800 ORTHO05D011618 4.8e-51 206.1 318 45.0
TAR636G0821 Trochodendron aralioides HOM05D009800 ORTHO05D011618 1.8e-42 177.6 407 35.6
QL02p042139 Quercus lobata HOM05D009800 ORTHO05D011618 3.2e-34 150.2 363 35.8
CiPaw.04G159000 Carya illinoinensis HOM05D009800 ORTHO05D011618 1.1e-26 125.2 312 33.0
Thecc.09G102100 Theobroma cacao HOM05D009800 ORTHO05D011618 7.0e-26 122.5 388 33.5
Duzib168G0690 Durio zibethinus HOM05D009800 ORTHO05D011618 1.7e-24 117.9 369 33.1
COL.COLO4_34766 Corchorus olitorius HOM05D009800 ORTHO05D011618 2.3e-24 117.5 358 33.8
Nn8g39099 Nelumbo nucifera HOM05D009800 ORTHO05D001848 2.3e-21 107.5 211 42.7
Cfa003196 Carpinus fangiana HOM05D064020 ORTHO05D011618 5.2e-21 106.3 316 33.2
Dinv36697 Davidia involucrata HOM05D009800 ORTHO05D011618 7.5e-20 102.4 258 36.4
CSS0017187 Camellia sinensis var. sinensis HOM05D003439 ORTHO05D004062 7.8e-17 92.4 327 31.2
Dinv41660 Davidia involucrata HOM05D001922 ORTHO05D001441 5.6e-15 86.3 76 63.2
PSO210G1075 Papaver somniferum HOM05D049672 ORTHO05D011618 6.2e-14 82.8 349 29.5
MBI04_g06589_MAGBIO Magnolia biondii HOM05D002243 ORTHO05D001848 4.9e-11 73.2 106 47.2
Oeu064196.1 Olea europaea HOM05D009800 ORTHO05D011618 9.2e-10 68.9 287 30.7
Nn6g35306 Nelumbo nucifera HOM05D009800 ORTHO05D011618 1.2e-09 68.6 206 35.0
Haze_25810 Corylus avellana HOM05D064020 ORTHO05D011618 1.6e-09 68.2 296 29.4
DCAR_012048 Daucus carota HOM05D009800 ORTHO05D011618 1.6e-09 68.2 194 33.5
PGR042G1190 Punica granatum HOM05D002243 ORTHO05D001848 3.5e-09 67.0 70 52.9
SalBow6G2660 Salvia bowleyana HOM05D002243 ORTHO05D001848 7.8e-09 65.9 43 72.1
SalBow6G4432 Salvia bowleyana HOM05D002243 ORTHO05D001848 7.8e-09 65.9 43 72.1
ATR0705G057 Amborella trichopoda HOM05D002243 ORTHO05D001848 1.0e-08 65.5 150 40.7
vmacro01929 Vaccinium macrocarpon HOM05D002243 ORTHO05D001848 1.0e-08 65.5 67 53.7
MSTRG.27769 Avicennia marina HOM05D002243 ORTHO05D001848 2.3e-08 64.3 115 40.9
Lj9P338T47 Lonicera japonica HOM05D002243 ORTHO05D001848 2.3e-08 64.3 70 51.4
Manes.04G132900 Manihot esculenta HOM05D009800 ORTHO05D011618 2.3e-08 64.3 100 42.0
Glyma.01G241100 Glycine max HOM05D002243 ORTHO05D001848 3.0e-08 63.9 62 53.2
TAR381G0567 Trochodendron aralioides HOM05D002243 ORTHO05D001848 3.9e-08 63.5 71 56.3
Aqoxy7G03883 Aquilegia oxysepala HOM05D012031 ORTHO05D001848 5.1e-08 63.2 349 24.9
CAN.G504.9 Capsicum annuum HOM05D002243 ORTHO05D001848 5.1e-08 63.2 94 45.7
SGA_v2.0_scaffold342G49428 Striga asiatica HOM05D002243 ORTHO05D001848 5.1e-08 63.2 43 69.8
Aqoxy6G01532 Aquilegia oxysepala HOM05D002243 ORTHO05D001848 6.6e-08 62.8 63 57.1
Aqoxy7G01456 Aquilegia oxysepala HOM05D009800 ORTHO05D011618 6.6e-08 62.8 211 28.0
Nitab4.5_0007488g0020 Nicotiana tabacum HOM05D002243 ORTHO05D001848 6.6e-08 62.8 43 67.4
Solyc01g106680.4 Solanum lycopersicum HOM05D002243 ORTHO05D001848 6.6e-08 62.8 124 38.7
CSS0016364 Camellia sinensis var. sinensis HOM05D002243 ORTHO05D001848 8.6e-08 62.4 43 67.4
Hma1.2p1_2654F.1_g326230 Hydrangea macrophylla HOM05D002243 ORTHO05D001848 8.6e-08 62.4 68 50.0
Atru.chr5.2225 Acer truncatum HOM05D002243 ORTHO05D001848 1.1e-07 62.0 69 52.2
MSTRG.16664 Avicennia marina HOM05D002243 ORTHO05D001848 1.1e-07 62.0 43 67.4
MSTRG.20241 Avicennia marina HOM05D002243 ORTHO05D001848 1.1e-07 62.0 207 33.3
MD10G1112600 Malus domestica HOM05D002243 ORTHO05D001848 1.1e-07 62.0 57 52.6
Oeu010475.1 Olea europaea HOM05D002243 ORTHO05D001848 1.1e-07 62.0 70 51.4
Prupe.1G544100 Prunus persica HOM05D002243 ORTHO05D001848 1.1e-07 62.0 67 52.2
GSVIVG01037020001 Vitis vinifera HOM05D002243 ORTHO05D001848 1.1e-07 62.0 67 55.2
arahy.Tifrunner.gnm1.ann1.2Q65GK Arachis hypogaea HOM05D002243 ORTHO05D001848 1.5e-07 61.6 43 67.4
arahy.Tifrunner.gnm1.ann1.XGM7WG Arachis hypogaea HOM05D002243 ORTHO05D001848 1.5e-07 61.6 43 67.4
Migut.B00490 Erythranthe guttata HOM05D002243 ORTHO05D001848 1.5e-07 61.6 138 39.1
Manes.10G087900 Manihot esculenta HOM05D002243 ORTHO05D001848 1.5e-07 61.6 71 46.5
PGSC0003DMG400005118 Solanum tuberosum HOM05D002243 ORTHO05D001848 1.5e-07 61.6 70 52.9
Eucgr.G01184 Eucalyptus grandis HOM05D002243 ORTHO05D001848 1.9e-07 61.2 69 49.3
Lj1g0019537 Lotus japonicus HOM05D002243 ORTHO05D001848 1.9e-07 61.2 43 67.4
CiPaw.06G162700 Carya illinoinensis HOM05D002243 ORTHO05D001848 2.5e-07 60.8 70 51.4
COL.COLO4_17804 Corchorus olitorius HOM05D002243 ORTHO05D001848 2.5e-07 60.8 43 62.8
MD05G1108600 Malus domestica HOM05D002243 ORTHO05D001848 2.5e-07 60.8 43 65.1
Manes.07G051400 Manihot esculenta HOM05D002243 ORTHO05D001848 2.5e-07 60.8 71 49.3
Sopen01g049010 Solanum pennellii HOM05D002243 ORTHO05D001848 2.5e-07 60.8 114 38.6
TWI14G1334 Tripterygium wilfordii HOM05D002243 ORTHO05D001848 3.3e-07 60.5 70 50.0
Dinv26979 Davidia involucrata HOM05D002243 ORTHO05D001848 4.3e-07 60.1 62 56.5
Duzib052G0991 Durio zibethinus HOM05D002243 ORTHO05D001848 4.3e-07 60.1 43 65.1
FAN27G0993 Fragaria x ananassa HOM05D002243 ORTHO05D001848 4.3e-07 60.1 55 54.5
Glyma.11G002700 Glycine max HOM05D002243 ORTHO05D001848 4.3e-07 60.1 43 65.1
Peaxi162Scf00016g03211 Petunia axillaris HOM05D002243 ORTHO05D001848 5.6e-07 59.7 43 65.1
RcHm_v2.0_Chr7g0232141 Rosa chinensis HOM05D002243 ORTHO05D001848 5.6e-07 59.7 71 50.7
Actinidia02430 Actinidia chinensis HOM05D002243 ORTHO05D001848 7.3e-07 59.3 43 62.8
Ah.01g007180 Amaranthus hybridus HOM05D002243 ORTHO05D001848 7.3e-07 59.3 54 55.6
Ciclev10028128m.g Citrus clementina HOM05D002243 ORTHO05D001848 7.3e-07 59.3 43 62.8
FvH4_2g02971 Fragaria vesca HOM05D002243 ORTHO05D001848 7.3e-07 59.3 55 54.5
FAN15G2335 Fragaria x ananassa HOM05D002243 ORTHO05D001848 7.3e-07 59.3 55 54.5
FAN20G2409 Fragaria x ananassa HOM05D002243 ORTHO05D001848 7.3e-07 59.3 55 54.5
FAN24G3407 Fragaria x ananassa HOM05D002243 ORTHO05D001848 7.3e-07 59.3 55 54.5
Glyma.17G086000 Glycine max HOM05D002243 ORTHO05D001848 7.3e-07 59.3 58 48.3
Lj5P222T65 Lonicera japonica HOM05D002243 ORTHO05D001848 7.3e-07 59.3 115 37.4
Nn6g34568 Nelumbo nucifera HOM05D002243 ORTHO05D001848 7.3e-07 59.3 70 54.3
Sabra16G0180600 Salix brachista HOM05D002243 ORTHO05D001848 7.3e-07 59.3 43 65.1
SGA_v2.0_scaffold121G33087 Striga asiatica HOM05D002243 ORTHO05D001848 7.3e-07 59.3 66 53.0
Ah.01g024500 Amaranthus hybridus HOM05D002243 ORTHO05D001848 9.6e-07 58.9 70 48.6
Gohir.D02G234800 Gossypium hirsutum HOM05D002243 ORTHO05D001848 9.6e-07 58.9 70 48.6
Prupe.8G152300 Prunus persica HOM05D002243 ORTHO05D001848 9.6e-07 58.9 54 51.9
RcHm_v2.0_Chr6g0247781 Rosa chinensis HOM05D002243 ORTHO05D001848 9.6e-07 58.9 44 63.6
Ca_11007_v3 Cicer arietinum L. HOM05D002243 ORTHO05D001848 1.2e-06 58.5 36 69.4
Glyma.20G136900 Glycine max HOM05D002243 ORTHO05D001848 1.2e-06 58.5 47 57.4
Gorai.005G262800 Gossypium raimondii HOM05D002243 ORTHO05D001848 1.2e-06 58.5 70 48.6
Potri.007G008600 Populus trichocarpa HOM05D002243 ORTHO05D001848 1.2e-06 58.5 65 52.3
Thecc.02G032300 Theobroma cacao HOM05D002243 ORTHO05D001848 1.2e-06 58.5 43 62.8
AUR62027035 Chenopodium quinoa HOM05D002243 ORTHO05D001848 1.6e-06 58.2 68 44.1
Duzib132G0349 Durio zibethinus HOM05D002243 ORTHO05D001848 1.6e-06 58.2 43 62.8
TWI59G0771 Tripterygium wilfordii HOM05D002243 ORTHO05D001848 1.6e-06 58.2 70 50.0
CiPaw.07G201100 Carya illinoinensis HOM05D002243 ORTHO05D001848 2.1e-06 57.8 135 34.8
Eucgr.F02202 Eucalyptus grandis HOM05D002243 ORTHO05D001848 2.1e-06 57.8 40 67.5
Gohir.A03G213300 Gossypium hirsutum HOM05D002243 ORTHO05D001848 2.1e-06 57.8 70 48.6
Peaxi162Scf00152g00066 Petunia axillaris HOM05D002243 ORTHO05D001848 2.1e-06 57.8 70 50.0
Psat6g212880 Pisum sativum HOM05D002243 ORTHO05D001848 2.1e-06 57.8 36 66.7
RcHm_v2.0_Chr1g0336871 Rosa chinensis HOM05D002243 ORTHO05D001848 2.1e-06 57.8 36 72.2
Zm00001eb055870 Zea mays HOM05D034594 ORTHO05D001848 2.1e-06 57.8 70 51.4
AUR62030879 Chenopodium quinoa HOM05D002243 ORTHO05D001848 2.8e-06 57.4 68 44.1
MBI16_g31808_MAGBIO Magnolia biondii HOM05D002243 ORTHO05D001848 2.8e-06 57.4 64 50.0
Hund06501 Selenicereus undatus HOM05D002243 ORTHO05D001848 2.8e-06 57.4 70 47.1
Actinidia36403 Actinidia chinensis HOM05D002243 ORTHO05D001848 3.6e-06 57.0 60 50.0
BraA01t00442Z Brassica rapa HOM05D010391 ORTHO05D001848 3.6e-06 57.0 72 48.6
FAN18G0601 Fragaria x ananassa HOM05D002243 ORTHO05D001848 3.6e-06 57.0 71 49.3
Oeu061818.1 Olea europaea HOM05D002243 ORTHO05D001848 3.6e-06 57.0 69 49.3
Phvul.007G048200 Phaseolus vulgaris HOM05D002243 ORTHO05D001848 3.6e-06 57.0 36 69.4
Potri.001G288800 Populus trichocarpa HOM05D002243 ORTHO05D001848 3.6e-06 57.0 43 60.5
ClCG10G009920 Citrullus lanatus HOM05D002243 ORTHO05D001848 4.7e-06 56.6 71 45.1
Haze_10330 Corylus avellana HOM05D002243 ORTHO05D001848 4.7e-06 56.6 64 48.4
MELO3C018032.2 Cucumis melo HOM05D002243 ORTHO05D001848 4.7e-06 56.6 70 47.1
FvH4_5g33410 Fragaria vesca HOM05D002243 ORTHO05D001848 4.7e-06 56.6 71 49.3
HanXRQChr06g0181751 Helianthus annuus HOM05D002243 ORTHO05D001848 4.7e-06 56.6 43 62.8
QL12p040753 Quercus lobata HOM05D002243 ORTHO05D001848 4.7e-06 56.6 70 44.3
CANSAT21G1644 Cannabis sativa HOM05D002243 ORTHO05D001848 6.2e-06 56.2 120 37.5
Cfa004723 Carpinus fangiana HOM05D002243 ORTHO05D001848 6.2e-06 56.2 40 62.5
FAN08G2076 Fragaria x ananassa HOM05D002243 ORTHO05D001848 6.2e-06 56.2 71 50.7
Medtr1g105890 Medicago truncatula HOM05D002243 ORTHO05D001848 6.2e-06 56.2 36 69.4
Rhsim05G0041100 Rhododendron simsii HOM05D009800 ORTHO05D011618 6.2e-06 56.2 302 26.5
Sc14g0002480 Simmondsia chinensis HOM05D002243 ORTHO05D001848 6.2e-06 56.2 104 39.4
THA.LOC104819521 Tarenaya hassleriana HOM05D010391 ORTHO05D001848 6.2e-06 56.2 122 38.5
A01p04590 Brassica napus HOM05D010391 ORTHO05D001848 8.1e-06 55.8 72 48.6
Duzib264G1092 Durio zibethinus HOM05D002243 ORTHO05D001848 8.1e-06 55.8 63 49.2
vmacro22263 Vaccinium macrocarpon HOM05D002243 ORTHO05D001848 8.1e-06 55.8 71 46.5


User provided reference genes

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