Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.7G221400 Prunus persica HOM05D004485 ORTHO05D005485 0.0e+00 1251.9 754 100.0
MD02G1064300 Malus domestica HOM05D004485 ORTHO05D005485 0.0e+00 1081.6 754 82.9
MD15G1195100 Malus domestica HOM05D004485 ORTHO05D005485 1.0e-311 1073.2 755 81.9
FAN19G2910 Fragaria x ananassa HOM05D004485 ORTHO05D005485 1.7e-268 929.5 767 72.5
Dinv36695 Davidia involucrata HOM05D004485 ORTHO05D005485 9.1e-251 870.5 756 69.8
QL02p042072 Quercus lobata HOM05D004485 ORTHO05D005485 3.8e-249 865.1 756 70.5
RcHm_v2.0_Chr2g0091661 Rosa chinensis HOM05D004485 ORTHO05D005485 1.2e-247 860.1 766 69.2
CiPaw.03G226100 Carya illinoinensis HOM05D004485 ORTHO05D005485 5.4e-243 844.7 757 69.1
Atru.chr7.1446 Acer truncatum HOM05D004485 ORTHO05D005485 6.6e-241 837.8 757 68.7
GSVIVG01015314001 Vitis vinifera HOM05D004485 ORTHO05D005485 6.1e-239 831.2 759 67.6
FAN26G2333 Fragaria x ananassa HOM05D004485 ORTHO05D005485 3.0e-238 828.9 767 66.9
Thecc.09G101900 Theobroma cacao HOM05D004485 ORTHO05D005485 6.8e-238 827.8 755 67.9
CiPaw.04G158800 Carya illinoinensis HOM05D004485 ORTHO05D005485 8.9e-238 827.4 774 66.8
FAN26G0748 Fragaria x ananassa HOM05D004485 ORTHO05D005485 8.9e-238 827.4 767 66.8
FvH4_1g05970 Fragaria vesca HOM05D004485 ORTHO05D005485 2.0e-237 826.2 767 66.6
TAR624G1325 Trochodendron aralioides HOM05D004485 ORTHO05D005485 4.9e-236 821.6 757 66.7
CANSAT56G2449 Cannabis sativa HOM05D004485 ORTHO05D005485 3.5e-234 815.5 755 66.8
CSS0002032 Camellia sinensis var. sinensis HOM05D004485 ORTHO05D005485 1.7e-233 813.1 745 67.4
Ciclev10007632m.g Citrus clementina HOM05D004485 ORTHO05D005485 2.3e-233 812.8 756 67.2
FAN28G2435 Fragaria x ananassa HOM05D004485 ORTHO05D005485 2.5e-232 809.3 777 65.3
Nn8g39096 Nelumbo nucifera HOM05D004485 ORTHO05D005485 4.0e-230 802.0 758 65.7
Actinidia09445 Actinidia chinensis HOM05D004485 ORTHO05D005485 1.5e-229 800.0 757 65.4
Potri.018G086600 Populus trichocarpa HOM05D004485 ORTHO05D005485 2.0e-229 799.7 755 64.9
Gohir.D08G263700 Gossypium hirsutum HOM05D004485 ORTHO05D005485 4.9e-228 795.0 763 64.2
Glyma.01G008900 Glycine max HOM05D004485 ORTHO05D005485 9.2e-227 790.8 756 65.1
Glyma.16G077500 Glycine max HOM05D004485 ORTHO05D005485 1.3e-225 786.9 756 64.8
Duzib187G1416 Durio zibethinus HOM05D004485 ORTHO05D005485 1.7e-225 786.6 755 65.4
Sabra18G0074900 Salix brachista HOM05D004485 ORTHO05D005485 3.9e-225 785.4 758 64.5
Duzib168G0844 Durio zibethinus HOM05D004485 ORTHO05D005485 1.1e-224 783.9 755 64.8
CSS0009570 Camellia sinensis var. sinensis HOM05D004485 ORTHO05D005485 1.5e-224 783.5 745 65.8
Actinidia17528 Actinidia chinensis HOM05D004485 ORTHO05D005485 1.4e-222 776.9 757 63.8
Gohir.A06G066600 Gossypium hirsutum HOM05D004485 ORTHO05D005485 1.2e-221 773.9 755 63.6
Manes.16G110100 Manihot esculenta HOM05D004485 ORTHO05D005485 2.6e-221 772.7 651 71.0
Gohir.A08G242800 Gossypium hirsutum HOM05D004485 ORTHO05D005485 6.4e-220 768.1 763 62.6
Sed0011847 Sechium edule HOM05D004485 ORTHO05D005485 6.4e-220 768.1 784 61.9
FAN23G2550 Fragaria x ananassa HOM05D004485 ORTHO05D005485 3.2e-219 765.8 777 62.8
TWI34G0799 Tripterygium wilfordii HOM05D004485 ORTHO05D005485 4.1e-219 765.4 757 64.3
MELO3C004583.2 Cucumis melo HOM05D004485 ORTHO05D005485 1.0e-217 760.8 761 62.7
Gohir.D06G065100 Gossypium hirsutum HOM05D004485 ORTHO05D005485 1.0e-217 760.8 755 63.0
CsaV3_2G001970 Cucumis sativus L. HOM05D004485 ORTHO05D005485 2.3e-217 759.6 760 62.5
Hma1.2p1_0571F.1_g180870 Hydrangea macrophylla HOM05D004485 ORTHO05D005485 2.2e-212 743.0 763 62.5
Eucgr.C01004 Eucalyptus grandis HOM05D004485 ORTHO05D005485 2.4e-211 739.6 757 61.8
Sc08g0007920 Simmondsia chinensis HOM05D004485 ORTHO05D005485 2.4e-211 739.6 760 61.6
Haze_25812 Corylus avellana HOM05D004485 ORTHO05D005485 3.2e-211 739.2 701 67.2
Solyc12g008390.3 Solanum lycopersicum HOM05D004485 ORTHO05D005485 6.6e-209 731.5 756 64.0
EL10Ac8g18398 Beta vulgaris HOM05D004485 ORTHO05D005485 8.7e-209 731.1 760 61.2
Sopen12g003350 Solanum pennellii HOM05D004485 ORTHO05D005485 8.7e-209 731.1 756 63.9
Lalb_Chr14g0371821 Lupinus albus HOM05D004485 ORTHO05D005485 1.9e-208 729.9 757 60.8
PSO210G4150 Papaver somniferum HOM05D004485 ORTHO05D005485 7.3e-208 728.0 760 60.5
Nitab4.5_0013389g0010 Nicotiana tabacum HOM05D004485 ORTHO05D005485 2.1e-207 726.5 804 62.2
Gorai.004G281700 Gossypium raimondii HOM05D004485 ORTHO05D005485 4.7e-207 725.3 658 67.2
Migut.K00530 Erythranthe guttata HOM05D004485 ORTHO05D005485 2.1e-202 709.9 747 60.9
MSTRG.26380 Avicennia marina HOM05D004485 ORTHO05D005485 3.5e-202 709.1 758 60.2
Lalb_Chr24g0397331 Lupinus albus HOM05D004485 ORTHO05D005485 2.3e-201 706.4 755 60.5
Oeu053166.1 Olea europaea HOM05D004485 ORTHO05D005485 3.0e-201 706.1 756 61.0
ClCG11G002190 Citrullus lanatus HOM05D004485 ORTHO05D005485 5.1e-201 705.3 767 59.1
COL.COLO4_34764 Corchorus olitorius HOM05D004485 ORTHO05D005485 1.5e-200 703.7 754 60.5
PSO210G3171 Papaver somniferum HOM05D004485 ORTHO05D005485 1.6e-199 700.3 760 59.6
Lj2g0014691 Lotus japonicus HOM05D004485 ORTHO05D005485 3.4e-197 692.6 755 58.0
MBI07_g22518_MAGBIO Magnolia biondii HOM05D004485 ORTHO05D005485 3.4e-197 692.6 762 59.6
Gorai.010G076200 Gossypium raimondii HOM05D004485 ORTHO05D005485 7.6e-197 691.4 784 57.5
Psat1g046640 Pisum sativum HOM05D004485 ORTHO05D005485 1.7e-196 690.3 750 59.6
Thhalv10001922m.g Eutrema salsugineum HOM05D004485 ORTHO05D005485 2.2e-196 689.9 745 63.2
BolC9t54403H Brassica oleracea HOM05D004485 ORTHO05D005485 1.2e-194 684.1 771 56.9
C09p15010 Brassica napus HOM05D004485 ORTHO05D005485 6.0e-194 681.8 771 56.9
PGR102G0995 Punica granatum HOM05D004485 ORTHO05D005485 3.0e-193 679.5 763 58.5
A09p12650 Brassica napus HOM05D004485 ORTHO05D005485 6.7e-193 678.3 771 57.3
Phvul.004G170300 Phaseolus vulgaris HOM05D004485 ORTHO05D005485 7.4e-192 674.9 754 58.1
BraA09t36912Z Brassica rapa HOM05D004485 ORTHO05D005485 6.2e-191 671.8 771 56.9
CAN.G1642.10 Capsicum annuum HOM05D004485 ORTHO05D005485 1.8e-190 670.2 749 61.7
BcaNung04089 Brassica carinata HOM05D004485 ORTHO05D005485 4.0e-190 669.1 777 56.9
Nitab4.5_0000566g0170 Nicotiana tabacum HOM05D004485 ORTHO05D005485 4.0e-190 669.1 785 58.3
vmacro10859 Vaccinium macrocarpon HOM05D004485 ORTHO05D005485 9.0e-190 667.9 679 63.5
VMungo0464G1472 Vigna mungo HOM05D004485 ORTHO05D005485 1.5e-189 667.2 759 57.7
Rhsim05G0040900 Rhododendron simsii HOM05D004485 ORTHO05D005485 1.7e-188 663.7 756 57.7
AL3G48250 Arabidopsis lyrata HOM05D004485 ORTHO05D005485 1.9e-187 660.2 750 61.2
AT2G19950 Arabidopsis thaliana HOM05D004485 ORTHO05D005485 5.5e-187 658.7 743 61.0
AUR62021427 Chenopodium quinoa HOM05D004485 ORTHO05D005485 5.5e-187 658.7 789 55.5
ECA236G0540 Erigeron canadensis HOM05D004485 ORTHO05D005485 1.0e-185 654.4 739 61.8
arahy.Tifrunner.gnm1.ann1.N3ID59 Arachis hypogaea HOM05D004485 ORTHO05D005485 3.9e-185 652.5 758 57.7
Carub.0003s3420 Capsella rubella HOM05D004485 ORTHO05D005485 3.1e-182 642.9 745 59.5
Ca_25562_v3 Cicer arietinum L. HOM05D004485 ORTHO05D005485 4.5e-181 639.0 759 56.0
arahy.Tifrunner.gnm1.ann1.8771PM Arachis hypogaea HOM05D004485 ORTHO05D005485 1.3e-180 637.5 790 55.2
TPR.G21387 Trifolium pratense HOM05D004485 ORTHO05D005485 6.5e-180 635.2 759 56.1
HPP92_005563 Vanilla planifolia HOM05D004485 ORTHO05D005485 1.3e-177 627.5 457 75.3
Aqoxy7G03881 Aquilegia oxysepala HOM05D004485 ORTHO05D005485 4.3e-176 622.5 766 54.7
Lsat_1_v5_gn_8_96840 Lactuca sativa HOM05D004485 ORTHO05D005485 5.7e-176 622.1 798 57.5
Medtr6g088595 Medicago truncatula HOM05D004485 ORTHO05D005485 5.7e-176 622.1 762 55.4
Os01g0744400 Oryza sativa ssp. japonica HOM05D004485 ORTHO05D005485 1.3e-175 620.9 769 53.7
THA.LOC104820040 Tarenaya hassleriana HOM05D004485 ORTHO05D005485 8.5e-172 608.2 752 54.5
CARHR110390 Cardamine hirsuta HOM05D004485 ORTHO05D005485 3.6e-170 602.8 763 54.0
MBI01_g35400_MAGBIO Magnolia biondii HOM05D004485 ORTHO05D005485 4.6e-170 602.4 847 50.3
Zm00001eb153530 Zea mays HOM05D004485 ORTHO05D005485 1.0e-169 601.3 775 52.9
Aa31LG8G16840 Aethionema arabicum HOM05D004485 ORTHO05D005485 3.9e-169 599.4 768 53.5
ATR0705G155 Amborella trichopoda HOM05D004485 ORTHO05D005485 1.1e-168 597.8 760 54.7
HanXRQChr12g0358161 Helianthus annuus HOM05D004485 ORTHO05D005485 1.7e-167 594.0 764 58.1
unitig_899.g15433 Utricularia gibba HOM05D004485 ORTHO05D005485 1.7e-167 594.0 753 51.5
Zm00001eb371090 Zea mays HOM05D004485 ORTHO05D005485 1.2e-165 587.8 765 52.0
Peaxi162Scf00665g00331 Petunia axillaris HOM05D004485 ORTHO05D005485 3.4e-165 586.3 778 56.3
SGA_v2.0_scaffold129G34191 Striga asiatica HOM05D004485 ORTHO05D005485 1.0e-161 574.7 380 82.6
Sp3g33270 Schrenkiella parvula HOM05D004485 ORTHO05D005485 1.0e-156 558.1 752 54.1
SEGI_40884 Sequoiadendron giganteum HOM05D004485 ORTHO05D005485 1.6e-154 550.8 763 49.5
CDE04G3494 Ceratophyllum demersum HOM05D004485 ORTHO05D005485 1.4e-153 547.7 750 50.5
arahy.Tifrunner.gnm1.ann1.TC5UZA Arachis hypogaea HOM05D004485 ORTHO05D005485 3.3e-152 543.1 773 50.1
BcaC04g22803 Brassica carinata HOM05D004485 ORTHO05D005485 3.5e-149 533.1 663 54.4
arahy.Tifrunner.gnm1.ann1.96JC9B Arachis hypogaea HOM05D004485 ORTHO05D005485 5.5e-147 525.8 773 49.7
Ah.14g083300 Amaranthus hybridus HOM05D004485 ORTHO05D005485 1.5e-136 491.1 449 66.1
AUR62010900 Chenopodium quinoa HOM05D004485 ORTHO05D005485 2.0e-133 480.7 712 49.9
Cc06_g10330 Coffea canephora HOM05D004485 ORTHO05D005485 1.8e-129 467.6 573 55.0
Hund29368 Selenicereus undatus HOM05D004485 ORTHO05D005485 9.2e-110 402.1 546 53.1
Hund29369 Selenicereus undatus HOM05D004485 ORTHO05D005485 7.8e-109 399.1 546 52.9
AagrBONN_evm.TU.Sc2ySwM_368.430 Anthoceros agrestis HOM05D004485 ORTHO05D005485 1.3e-100 371.7 750 40.5
Actinidia39785 Actinidia chinensis HOM05D004485 ORTHO05D005485 3.6e-98 363.6 229 86.5
Oeu064192.1 Olea europaea HOM05D004485 ORTHO05D005485 4.2e-94 350.1 236 83.5
Actinidia39786 Actinidia chinensis HOM05D004485 ORTHO05D005485 4.9e-87 326.6 475 49.9
Hund28808 Selenicereus undatus HOM05D004485 ORTHO05D005485 1.1e-86 325.5 211 83.4
Hund28810 Selenicereus undatus HOM05D004485 ORTHO05D005485 1.1e-86 325.5 211 83.4
MBI07_g30871_MAGBIO Magnolia biondii HOM05D004485 ORTHO05D005485 2.1e-85 321.2 231 77.5
CDE02G0772 Ceratophyllum demersum HOM05D004485 ORTHO05D005485 6.2e-82 309.7 231 75.3
Oeu064194.1 Olea europaea HOM05D004485 ORTHO05D005485 1.4e-81 308.5 480 49.8
Cc06_g10340 Coffea canephora HOM05D004485 ORTHO05D005485 2.9e-79 300.8 186 86.6
SMO356G0242 Selaginella moellendorffii HOM05D004485 ORTHO05D005485 3.0e-76 290.8 469 45.6
Potri.006G164350 Populus trichocarpa HOM05D004485 ORTHO05D005485 4.6e-69 266.9 172 84.9
DCAR_012046 Daucus carota HOM05D004485 ORTHO05D005485 7.4e-67 259.6 454 43.8
Cpa.g.sc40.63 Carica papaya HOM05D004485 ORTHO05D005485 4.1e-65 253.8 483 43.9
CBR_g39203 Chara braunii HOM05D004485 ORTHO05D005485 1.3e-63 248.8 413 42.4
Cpa.g.sc40.65 Carica papaya HOM05D004485 ORTHO05D005485 6.3e-58 229.9 136 89.0
SHI02696 Sapria himalayana HOM05D004485 ORTHO05D005485 4.5e-48 197.2 464 40.5
SMO140G0037 Selaginella moellendorffii HOM05D004485 ORTHO05D005485 2.5e-46 191.4 469 36.0
arahy.Tifrunner.gnm1.ann1.SL9UG3 Arachis hypogaea HOM05D004485 ORTHO05D005485 2.7e-45 188.0 355 43.4
Sc08g0007940 Simmondsia chinensis HOM05D004485 ORTHO05D005485 3.2e-38 164.5 208 54.8
BcaC06g36663 Brassica carinata HOM05D004485 ORTHO05D005485 9.7e-35 152.9 243 44.4
Cpa.g.sc40.64 Carica papaya HOM05D004485 ORTHO05D005485 1.2e-32 146.0 86 93.0
SalBow3G4580 Salvia bowleyana HOM05D004485 ORTHO05D005485 4.5e-32 144.1 93 80.6
Rhsim05G0040800 Rhododendron simsii HOM05D000602 ORTHO05D001147 5.5e-30 137.1 189 51.9
PGR102G1041 Punica granatum HOM05D004485 ORTHO05D005485 2.1e-29 135.2 212 48.6
Gohir.D05G357440 Gossypium hirsutum HOM05D004485 ORTHO05D005485 2.7e-24 118.2 70 91.4
Gohir.D05G357788 Gossypium hirsutum HOM05D004485 ORTHO05D005485 2.7e-24 118.2 70 91.4
Gorai.003G091600 Gossypium raimondii HOM05D004485 ORTHO05D005485 1.7e-23 115.5 72 86.1
A07p00710 Brassica napus HOM05D004485 ORTHO05D005485 5.0e-23 114.0 291 36.1
Gohir.D04G126400 Gossypium hirsutum HOM05D004485 ORTHO05D005485 6.5e-23 113.6 109 64.2
Gohir.D01G081701 Gossypium hirsutum HOM05D004485 ORTHO05D005485 2.7e-21 108.2 70 88.6
Cre12.g517500 Chlamydomonas reinhardtii HOM05D004485 ORTHO05D005485 1.3e-15 89.4 456 28.3
HPP92_005577 Vanilla planifolia HOM05D004485 ORTHO05D005485 1.5e-14 85.9 65 69.2
C07p01440 Brassica napus HOM05D004485 ORTHO05D005485 2.0e-11 75.5 70 64.3
ATR0693G380 Amborella trichopoda HOM05D004485 ORTHO05D005485 2.6e-11 75.1 77 58.4
HanXRQChr10g0316161 Helianthus annuus HOM05D004485 ORTHO05D005485 3.5e-08 64.7 50 74.0
PRCOL_00000913 Prasinoderma coloniale HOM05D004485 ORTHO05D005485 5.9e-08 63.9 469 26.2
arahy.Tifrunner.gnm1.ann1.G8QSGL Arachis hypogaea HOM05D004485 ORTHO05D005485 1.1e-06 59.7 66 56.1
Oeu014377.2 Olea europaea HOM05D004897 ORTHO05D005928 1.9e-06 58.9 360 25.8
Gorai.008G289400 Gossypium raimondii HOM05D004897 ORTHO05D005928 2.5e-06 58.5 357 24.4
HanXRQChr03g0072061 Helianthus annuus HOM05D004485 ORTHO05D005485 2.5e-06 58.5 40 70.0
Gohir.D12G269100 Gossypium hirsutum HOM05D004897 ORTHO05D005928 3.3e-06 58.2 354 24.0
MD06G1230800 Malus domestica HOM05D004897 ORTHO05D005928 4.3e-06 57.8 356 24.2
Gohir.A12G268700 Gossypium hirsutum HOM05D004897 ORTHO05D005928 5.6e-06 57.4 355 23.7
Lsat_1_v5_gn_8_144040 Lactuca sativa HOM05D004897 ORTHO05D005928 5.6e-06 57.4 338 24.6


User provided reference genes

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