Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.7G220800 Prunus persica HOM05D010557 ORTHO05D000038 1.4e-69 266.2 138 100.0
MD15G1195700 Malus domestica HOM05D010557 ORTHO05D000038 2.0e-26 122.9 140 52.9
RcHm_v2.0_Chr2g0091781 Rosa chinensis HOM05D000082 ORTHO05D000038 5.0e-22 108.2 121 50.4
FAN26G1861 Fragaria x ananassa HOM05D010557 ORTHO05D000038 9.5e-21 104.0 121 46.3
FAN26G2787 Fragaria x ananassa HOM05D010557 ORTHO05D000038 9.5e-21 104.0 121 46.3
FAN23G1102 Fragaria x ananassa HOM05D010557 ORTHO05D000038 2.8e-20 102.4 122 47.5
FvH4_1g06030 Fragaria vesca HOM05D010557 ORTHO05D000038 3.6e-20 102.1 122 49.2
FAN19G2264 Fragaria x ananassa HOM05D010557 ORTHO05D000038 3.6e-20 102.1 122 49.2
FAN28G1239 Fragaria x ananassa HOM05D010557 ORTHO05D000038 1.0e-19 100.5 130 46.2
Cfa003188 Carpinus fangiana HOM05D000082 ORTHO05D000038 4.4e-18 95.1 130 42.3
Haze_25822 Corylus avellana HOM05D000082 ORTHO05D000038 2.9e-17 92.4 130 40.8
CiPaw.03G225700 Carya illinoinensis HOM05D000082 ORTHO05D000038 3.7e-17 92.0 129 42.6
Manes.16G109700 Manihot esculenta HOM05D000082 ORTHO05D000038 9.2e-16 87.4 136 39.7
Potri.006G164516 Populus trichocarpa HOM05D044251 ORTHO05D000038 9.2e-16 87.4 130 42.3
CiPaw.04G158500 Carya illinoinensis HOM05D010557 ORTHO05D000038 1.6e-15 86.7 129 39.5
CANSAT11G0577 Cannabis sativa HOM05D000082 ORTHO05D000038 1.0e-14 84.0 128 39.8
CANSAT56G4434 Cannabis sativa HOM05D000082 ORTHO05D000038 1.0e-14 84.0 128 39.8
Migut.K00535 Erythranthe guttata HOM05D000082 ORTHO05D000038 2.5e-13 79.3 121 38.0
Cpa.g.c31432.2 Carica papaya HOM05D000082 ORTHO05D000038 3.3e-13 79.0 125 37.6
Nn8g39082 Nelumbo nucifera HOM05D000082 ORTHO05D000038 3.3e-13 79.0 129 35.7
Manes.03G026100 Manihot esculenta HOM05D000082 ORTHO05D000038 7.3e-13 77.8 127 37.8
Manes.03G026200 Manihot esculenta HOM05D000082 ORTHO05D000038 7.3e-13 77.8 127 37.8
Manes.03G026300 Manihot esculenta HOM05D000082 ORTHO05D000038 9.5e-13 77.4 131 36.6
EL10Ac8g18387 Beta vulgaris HOM05D000082 ORTHO05D000038 2.1e-12 76.3 133 38.3
Lalb_Chr05g0223191 Lupinus albus HOM05D000082 ORTHO05D000038 2.1e-12 76.3 130 34.6
Ciclev10009946m.g Citrus clementina HOM05D000082 ORTHO05D000038 2.8e-12 75.9 139 34.5
Atru.chr7.1450 Acer truncatum HOM05D000082 ORTHO05D000038 4.7e-12 75.1 127 35.4
VMungo0251G1801 Vigna mungo HOM05D000082 ORTHO05D000038 8.1e-12 74.3 118 39.0
CSS0038369 Camellia sinensis var. sinensis HOM05D000082 ORTHO05D000038 2.3e-11 72.8 118 39.0
Ciclev10010643m.g Citrus clementina HOM05D000082 ORTHO05D000038 3.1e-11 72.4 123 34.1
CsaV3_2G001940 Cucumis sativus L. HOM05D000082 ORTHO05D000038 5.2e-11 71.6 135 33.3
Migut.K00536 Erythranthe guttata HOM05D000082 ORTHO05D000038 5.2e-11 71.6 122 34.4
Prupe.7G220900 Prunus persica HOM05D010557 ORTHO05D000038 5.2e-11 71.6 126 43.7
EL10Ac8g18389 Beta vulgaris HOM05D000082 ORTHO05D000038 8.9e-11 70.9 131 33.6
FAN26G3000 Fragaria x ananassa HOM05D010557 ORTHO05D000038 1.2e-10 70.5 89 41.6
Glyma.08G034000 Glycine max HOM05D000082 ORTHO05D000038 1.2e-10 70.5 117 39.3
Gohir.A13G196250 Gossypium hirsutum HOM05D000082 ORTHO05D000038 1.2e-10 70.5 120 36.7
Nn6g35315 Nelumbo nucifera HOM05D000082 ORTHO05D000038 1.2e-10 70.5 123 35.0
MSTRG.26383 Avicennia marina HOM05D000082 ORTHO05D000038 1.5e-10 70.1 125 33.6
Lj4g0022676 Lotus japonicus HOM05D000082 ORTHO05D000038 1.5e-10 70.1 125 33.6
GSVIVG01015309001 Vitis vinifera HOM05D000082 ORTHO05D000038 1.5e-10 70.1 121 33.9
FvH4_1g06020 Fragaria vesca HOM05D010557 ORTHO05D000038 2.0e-10 69.7 92 42.4
Atru.chr7.1452 Acer truncatum HOM05D020284 ORTHO05D000038 2.6e-10 69.3 84 41.7
AUR62010909 Chenopodium quinoa HOM05D000082 ORTHO05D000038 2.6e-10 69.3 134 35.1
Duzib187G0229 Durio zibethinus HOM05D000082 ORTHO05D000038 2.6e-10 69.3 119 37.0
ClCG11G002160 Citrullus lanatus HOM05D000082 ORTHO05D000038 3.4e-10 68.9 136 33.8
Ciclev10009895m.g Citrus clementina HOM05D000082 ORTHO05D000038 3.4e-10 68.9 133 32.3
COL.COLO4_34756 Corchorus olitorius HOM05D013297 ORTHO05D000038 3.4e-10 68.9 128 35.2
Hma1.2p1_0571F.1_g180720 Hydrangea macrophylla HOM05D000082 ORTHO05D000038 4.4e-10 68.6 122 36.9
PSO063G0775 Papaver somniferum HOM05D010557 ORTHO05D000038 4.4e-10 68.6 88 40.9
AUR62021418 Chenopodium quinoa HOM05D000082 ORTHO05D000038 7.5e-10 67.8 137 35.0
MELO3C004586.2 Cucumis melo HOM05D000082 ORTHO05D000038 7.5e-10 67.8 135 32.6
FAN19G0883 Fragaria x ananassa HOM05D010557 ORTHO05D000038 9.8e-10 67.4 92 41.3
Phvul.002G309300 Phaseolus vulgaris HOM05D000082 ORTHO05D000038 9.8e-10 67.4 118 34.7
Cc06_g10420 Coffea canephora HOM05D000082 ORTHO05D000038 1.3e-09 67.0 132 34.1
arahy.Tifrunner.gnm1.ann1.8992SQ Arachis hypogaea HOM05D000082 ORTHO05D000038 2.9e-09 65.9 133 35.3
DCAR_012044 Daucus carota HOM05D000082 ORTHO05D000038 2.9e-09 65.9 126 32.5
Gohir.A06G066750 Gossypium hirsutum HOM05D013297 ORTHO05D000038 2.9e-09 65.9 121 35.5
Gohir.D13G201400 Gossypium hirsutum HOM05D000082 ORTHO05D000038 2.9e-09 65.9 120 35.0
Gorai.010G076400 Gossypium raimondii HOM05D013297 ORTHO05D000038 2.9e-09 65.9 121 36.4
Gorai.013G230200 Gossypium raimondii HOM05D000082 ORTHO05D000038 2.9e-09 65.9 120 35.0
Sc07g0007410 Simmondsia chinensis HOM05D000082 ORTHO05D000038 2.9e-09 65.9 126 32.5
Gohir.D06G065266 Gossypium hirsutum HOM05D013297 ORTHO05D000038 3.7e-09 65.5 121 36.4
Sed0015992 Sechium edule HOM05D000082 ORTHO05D000038 3.7e-09 65.5 123 30.9
Cc06_g10410 Coffea canephora HOM05D000082 ORTHO05D000038 4.9e-09 65.1 34 70.6
CsaV3_2G001950 Cucumis sativus L. HOM05D000082 ORTHO05D000038 4.9e-09 65.1 118 32.2
Sc08g0007980 Simmondsia chinensis HOM05D000082 ORTHO05D000038 4.9e-09 65.1 130 35.4
Eucgr.C01001 Eucalyptus grandis HOM05D000082 ORTHO05D000038 1.1e-08 63.9 123 35.0
PGSC0003DMG400021777 Solanum tuberosum HOM05D000082 ORTHO05D000038 1.9e-08 63.2 125 35.2
vmacro06246 Vaccinium macrocarpon HOM05D000082 ORTHO05D000038 1.9e-08 63.2 135 33.3
MELO3C009075.2 Cucumis melo HOM05D000082 ORTHO05D000038 2.4e-08 62.8 30 73.3
CsaV3_7G001950 Cucumis sativus L. HOM05D000082 ORTHO05D000038 2.4e-08 62.8 30 73.3
CsaV3_7G002010 Cucumis sativus L. HOM05D000082 ORTHO05D000038 2.4e-08 62.8 30 73.3
Eucgr.C03733 Eucalyptus grandis HOM05D000082 ORTHO05D000038 2.4e-08 62.8 123 36.6
MELO3C004585.2 Cucumis melo HOM05D000082 ORTHO05D000038 3.2e-08 62.4 80 38.8
PGSC0003DMG400000389 Solanum tuberosum HOM05D000082 ORTHO05D000038 3.2e-08 62.4 122 34.4
vmacro06247 Vaccinium macrocarpon HOM05D000082 ORTHO05D000038 3.2e-08 62.4 38 68.4
Eucgr.L03177 Eucalyptus grandis HOM05D010557 ORTHO05D000038 4.1e-08 62.0 123 39.0
Medtr6g048000 Medicago truncatula HOM05D000082 ORTHO05D000038 4.1e-08 62.0 83 37.3
Medtr8g102590 Medicago truncatula HOM05D000082 ORTHO05D000038 5.4e-08 61.6 117 35.0
Ah.09g230660 Amaranthus hybridus HOM05D000082 ORTHO05D000038 9.2e-08 60.8 122 32.0
AUR62021417 Chenopodium quinoa HOM05D000082 ORTHO05D000038 9.2e-08 60.8 128 34.4
FAN13G0959 Fragaria x ananassa HOM05D006854 ORTHO05D029560 9.2e-08 60.8 77 35.1
Solyc05g018050.1 Solanum lycopersicum HOM05D000082 ORTHO05D000038 9.2e-08 60.8 123 34.1
Sopen05g014700 Solanum pennellii HOM05D000082 ORTHO05D000038 9.2e-08 60.8 123 34.1
Sed0025763 Sechium edule HOM05D000082 ORTHO05D000038 1.2e-07 60.5 41 58.5
AUR62021416 Chenopodium quinoa HOM05D000082 ORTHO05D000038 1.6e-07 60.1 90 37.8
Rhsim03G0237300 Rhododendron simsii HOM05D000082 ORTHO05D000038 1.6e-07 60.1 38 65.8
Sed0012858 Sechium edule HOM05D000082 ORTHO05D000038 1.6e-07 60.1 114 30.7
THA.LOC104811294 Tarenaya hassleriana HOM05D020284 ORTHO05D000038 1.6e-07 60.1 130 34.6
Sed0002646 Sechium edule HOM05D000082 ORTHO05D000038 2.7e-07 59.3 30 63.3
Ah.09g230670 Amaranthus hybridus HOM05D000082 ORTHO05D000038 3.5e-07 58.9 134 30.6
MELO3C017919.2 Cucumis melo HOM05D000082 ORTHO05D000038 3.5e-07 58.9 28 71.4
CsaV3_2G011420 Cucumis sativus L. HOM05D000082 ORTHO05D000038 4.6e-07 58.5 34 61.8
Thecc.04G170300 Theobroma cacao HOM05D020284 ORTHO05D000038 4.6e-07 58.5 120 35.0
MELO3C008980.2 Cucumis melo HOM05D000082 ORTHO05D000038 6.0e-07 58.2 39 59.0
MELO3C020462.2 Cucumis melo HOM05D000082 ORTHO05D000038 6.0e-07 58.2 31 64.5
MELO3C023130.2 Cucumis melo HOM05D000082 ORTHO05D000038 6.0e-07 58.2 37 62.2
DCAR_012043 Daucus carota HOM05D010557 ORTHO05D000038 7.8e-07 57.8 122 32.8
Thhalv10009413m.g Eutrema salsugineum HOM05D000082 ORTHO05D000038 1.0e-06 57.4 30 66.7
Lsat_1_v5_gn_7_40280 Lactuca sativa HOM05D000082 ORTHO05D000038 1.0e-06 57.4 123 34.1
AUR62010908 Chenopodium quinoa HOM05D000082 ORTHO05D000038 1.3e-06 57.0 93 37.6
CsaV3_1G039540 Cucumis sativus L. HOM05D000001 ORTHO05D000003 1.3e-06 57.0 29 69.0
CsaV3_3G047400 Cucumis sativus L. HOM05D000082 ORTHO05D000038 1.3e-06 57.0 28 71.4
MBI04_g26780_MAGBIO Magnolia biondii HOM05D000082 ORTHO05D000038 1.3e-06 57.0 121 29.8
Sed0020057 Sechium edule HOM05D000082 ORTHO05D000038 1.3e-06 57.0 30 63.3
ClCG04G000540 Citrullus lanatus HOM05D000082 ORTHO05D000038 1.7e-06 56.6 30 66.7
QL10p017068 Quercus lobata HOM05D000082 ORTHO05D000038 1.7e-06 56.6 41 56.1
Sed0011597 Sechium edule HOM05D000082 ORTHO05D000038 1.7e-06 56.6 30 60.0
Sopen12g003390 Solanum pennellii HOM05D000082 ORTHO05D000038 1.7e-06 56.6 122 33.6
A01p38960 Brassica napus HOM05D000082 ORTHO05D000038 2.3e-06 56.2 38 52.6
A07p10690 Brassica napus HOM05D000082 ORTHO05D000038 2.3e-06 56.2 103 28.2
BraA07t28863Z Brassica rapa HOM05D000082 ORTHO05D000038 2.3e-06 56.2 103 28.2
FAN04G0586 Fragaria x ananassa HOM05D006854 ORTHO05D011215 2.3e-06 56.2 65 40.0
Medtr1g114620 Medicago truncatula HOM05D000082 ORTHO05D000038 2.3e-06 56.2 124 31.5
PGSC0003DMG400021778 Solanum tuberosum HOM05D000082 ORTHO05D000038 2.3e-06 56.2 118 33.9
GSVIVG01018684001 Vitis vinifera HOM05D000187 ORTHO05D000230 2.3e-06 56.2 36 58.3
BcaB03g13888 Brassica carinata HOM05D000082 ORTHO05D000038 3.0e-06 55.8 30 60.0
BcaB03g13889 Brassica carinata HOM05D000082 ORTHO05D000038 3.0e-06 55.8 30 60.0
BcaC09g48455 Brassica carinata HOM05D000082 ORTHO05D000038 3.0e-06 55.8 37 54.1
BolC1t04913H Brassica oleracea HOM05D000082 ORTHO05D000038 3.0e-06 55.8 37 54.1
Lalb_Chr06g0163961 Lupinus albus HOM05D000082 ORTHO05D000038 3.0e-06 55.8 97 35.1
Prupe.1G363700 Prunus persica HOM05D000082 ORTHO05D000038 3.0e-06 55.8 108 34.3
Sed0001179 Sechium edule HOM05D010557 ORTHO05D000038 3.0e-06 55.8 75 38.7
ATR0680G020 Amborella trichopoda HOM05D000082 ORTHO05D014356 3.9e-06 55.5 37 54.1
ATR0680G272 Amborella trichopoda HOM05D000082 ORTHO05D014356 3.9e-06 55.5 37 54.1
C01p49580 Brassica napus HOM05D000082 ORTHO05D000038 3.9e-06 55.5 37 54.1
CBR_g19973 Chara braunii HOM05D000082 ORTHO05D000038 3.9e-06 55.5 29 65.5
FAN08G0630 Fragaria x ananassa HOM05D006854 ORTHO05D029560 3.9e-06 55.5 77 32.5
Aa31LG5G22440 Aethionema arabicum HOM05D000187 ORTHO05D005916 5.1e-06 55.1 36 58.3
C07p16290 Brassica napus HOM05D000082 ORTHO05D000038 5.1e-06 55.1 107 28.0
BolC7t42123H Brassica oleracea HOM05D000082 ORTHO05D000038 5.1e-06 55.1 30 60.0
DCAR_012042 Daucus carota HOM05D000082 ORTHO05D000038 5.1e-06 55.1 120 31.7
RcHm_v2.0_Chr7g0194301 Rosa chinensis HOM05D006854 ORTHO05D022664 5.1e-06 55.1 31 58.1
Sabra16G0138400 Salix brachista HOM05D000082 ORTHO05D000038 5.1e-06 55.1 28 71.4
Solyc12g008480.3 Solanum lycopersicum HOM05D000082 ORTHO05D000038 5.1e-06 55.1 25 76.0
TWI09G1467 Tripterygium wilfordii HOM05D000082 ORTHO05D000038 5.1e-06 55.1 98 31.6
Glyma.13G338400 Glycine max HOM05D000082 ORTHO05D001639 6.6e-06 54.7 88 34.1
Lj3g0007871 Lotus japonicus HOM05D000082 ORTHO05D001639 6.6e-06 54.7 89 34.8
Potri.001G231000 Populus trichocarpa HOM05D000082 ORTHO05D000038 6.6e-06 54.7 28 71.4
HPP92_005765 Vanilla planifolia HOM05D000082 ORTHO05D000038 6.6e-06 54.7 29 69.0
ATR0705G010 Amborella trichopoda HOM05D000082 ORTHO05D000038 8.6e-06 54.3 35 65.7
Ca_02676_v3 Cicer arietinum L. HOM05D024754 ORTHO05D000038 8.6e-06 54.3 29 69.0
MELO3C003583.2 Cucumis melo HOM05D000082 ORTHO05D000038 8.6e-06 54.3 27 70.4
CsaV3_2G036020 Cucumis sativus L. HOM05D000082 ORTHO05D014613 8.6e-06 54.3 30 60.0
FvH4_5g09630 Fragaria vesca HOM05D006854 ORTHO05D011215 8.6e-06 54.3 65 40.0
FAN18G1262 Fragaria x ananassa HOM05D006854 ORTHO05D011215 8.6e-06 54.3 65 40.0
FAN27G0304 Fragaria x ananassa HOM05D000082 ORTHO05D000038 8.6e-06 54.3 107 31.8
PGR142G0013 Punica granatum HOM05D000082 ORTHO05D000038 8.6e-06 54.3 115 32.2
Solyc12g008440.1 Solanum lycopersicum HOM05D000082 ORTHO05D000038 8.6e-06 54.3 122 32.8
PGSC0003DMG400000359 Solanum tuberosum HOM05D000634 ORTHO05D000517 8.6e-06 54.3 25 76.0


User provided reference genes

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