Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.7G218700 Prunus persica HOM05D008202 ORTHO05D010302 3.0e-45 184.9 98 100.0
MD02G1066600 Malus domestica HOM05D008202 ORTHO05D010302 1.4e-31 139.4 93 81.7
MD15G1197100 Malus domestica HOM05D008202 ORTHO05D010302 5.5e-23 110.9 85 72.9
FvH4_1g06280 Fragaria vesca HOM05D008202 ORTHO05D010302 4.8e-19 97.8 100 59.0
FAN19G1093 Fragaria x ananassa HOM05D008202 ORTHO05D010302 4.8e-19 97.8 100 59.0
FAN23G0175 Fragaria x ananassa HOM05D008202 ORTHO05D010302 8.2e-19 97.1 100 58.0
Ciclev10010342m.g Citrus clementina HOM05D008202 ORTHO05D010302 7.7e-17 90.5 77 61.0
Manes.03G026600 Manihot esculenta HOM05D008202 ORTHO05D010302 1.3e-16 89.7 97 55.7
MSTRG.19550 Avicennia marina HOM05D008202 ORTHO05D010302 1.7e-16 89.4 96 53.1
Oeu018577.1 Olea europaea HOM05D008202 ORTHO05D010302 6.5e-16 87.4 95 52.6
Dinv42250 Davidia involucrata HOM05D008202 ORTHO05D010302 1.9e-15 85.9 97 57.7
CiPaw.04G157000 Carya illinoinensis HOM05D008202 ORTHO05D010302 3.2e-15 85.1 92 48.9
Peaxi162Scf00720g00418 Petunia axillaris HOM05D008202 ORTHO05D010302 4.2e-15 84.7 71 64.8
Ciclev10027258m.g Citrus clementina HOM05D008202 ORTHO05D010302 5.5e-15 84.3 65 67.7
CiPaw.04G155900 Carya illinoinensis HOM05D008202 ORTHO05D010302 1.2e-14 83.2 92 47.8
Manes.04G125801 Manihot esculenta HOM05D008202 ORTHO05D010302 4.7e-14 81.3 92 51.1
Manes.13G078801 Manihot esculenta HOM05D008202 ORTHO05D010302 4.7e-14 81.3 92 51.1
Thecc.09G099700 Theobroma cacao HOM05D008202 ORTHO05D010302 4.7e-14 81.3 92 50.0
TWI63G1052 Tripterygium wilfordii HOM05D008202 ORTHO05D010302 4.7e-14 81.3 96 46.9
Hma1.2p1_0386F.1_g141760 Hydrangea macrophylla HOM05D008202 ORTHO05D010302 8.0e-14 80.5 95 52.6
SGA_v2.0_scaffold512G52633 Striga asiatica HOM05D008202 ORTHO05D010302 1.0e-13 80.1 94 51.1
FAN26G0167 Fragaria x ananassa HOM05D008202 ORTHO05D010302 1.4e-13 79.7 60 70.0
FAN26G3206 Fragaria x ananassa HOM05D008202 ORTHO05D010302 1.4e-13 79.7 60 70.0
CSS0001567 Camellia sinensis var. sinensis HOM05D008202 ORTHO05D010302 1.8e-13 79.3 90 50.0
Dinv36682 Davidia involucrata HOM05D008202 ORTHO05D010302 2.3e-13 79.0 61 65.6
Migut.K00545 Erythranthe guttata HOM05D008202 ORTHO05D010302 2.3e-13 79.0 94 51.1
vmacro10849 Vaccinium macrocarpon HOM05D008202 ORTHO05D010302 4.0e-13 78.2 71 59.2
Actinidia39781 Actinidia chinensis HOM05D008202 ORTHO05D010302 6.8e-13 77.4 92 50.0
Cc06_g10540 Coffea canephora HOM05D008202 ORTHO05D010302 6.8e-13 77.4 46 76.1
Haze_25829 Corylus avellana HOM05D008202 ORTHO05D010302 6.8e-13 77.4 96 51.0
HanXRQChr12g0358111 Helianthus annuus HOM05D008202 ORTHO05D010302 8.8e-13 77.0 92 51.1
RcHm_v2.0_Chr2g0091981 Rosa chinensis HOM05D008202 ORTHO05D010302 2.0e-12 75.9 54 66.7
Lsat_1_v5_gn_8_98261 Lactuca sativa HOM05D008202 ORTHO05D010302 2.6e-12 75.5 63 60.3
PGSC0003DMG400046448 Solanum tuberosum HOM05D001685 ORTHO05D006653 7.5e-12 73.9 86 51.2
Actinidia17520 Actinidia chinensis HOM05D008202 ORTHO05D010302 2.2e-11 72.4 91 45.1
EL10Ac8g18376 Beta vulgaris HOM05D008202 ORTHO05D010302 2.2e-11 72.4 68 52.9
Ah.14g082540 Amaranthus hybridus HOM05D008202 ORTHO05D010302 3.7e-11 71.6 43 69.8
Ah.14g083220 Amaranthus hybridus HOM05D008202 ORTHO05D010302 3.7e-11 71.6 43 69.8
AUR62010887 Chenopodium quinoa HOM05D008202 ORTHO05D010302 3.7e-11 71.6 72 48.6
Rhsim05G0039400 Rhododendron simsii HOM05D008202 ORTHO05D010302 3.7e-11 71.6 98 43.9
Solyc04g058130.3 Solanum lycopersicum HOM05D008202 ORTHO05D010302 3.7e-11 71.6 67 56.7
Medtr6g088800 Medicago truncatula HOM05D008202 ORTHO05D010302 6.3e-11 70.9 96 45.8
Nitab4.5_0002557g0010 Nicotiana tabacum HOM05D001685 ORTHO05D006653 6.3e-11 70.9 43 79.1
COL.COLO4_34733 Corchorus olitorius HOM05D008202 ORTHO05D010302 1.4e-10 69.7 49 65.3
Sc18g0001520 Simmondsia chinensis HOM05D008202 ORTHO05D010302 1.4e-10 69.7 95 48.4
GSVIVG01015295001 Vitis vinifera HOM05D008202 ORTHO05D010302 1.4e-10 69.7 76 47.4
AUR62021399 Chenopodium quinoa HOM05D008202 ORTHO05D010302 1.8e-10 69.3 45 68.9
Gorai.010G077500 Gossypium raimondii HOM05D008202 ORTHO05D010302 4.1e-10 68.2 95 49.5
Atru.chr7.1471 Acer truncatum HOM05D008202 ORTHO05D010302 5.4e-10 67.8 47 66.0
CDE08G1102 Ceratophyllum demersum HOM05D008202 ORTHO05D010302 5.4e-10 67.8 90 42.2
CsaV3_2G001850 Cucumis sativus L. HOM05D008202 ORTHO05D010302 5.4e-10 67.8 53 52.8
DCAR_028656 Daucus carota HOM05D008202 ORTHO05D010302 5.4e-10 67.8 48 60.4
Gohir.A06G067500 Gossypium hirsutum HOM05D008202 ORTHO05D010302 1.2e-09 66.6 92 48.9
ClCG11G002070 Citrullus lanatus HOM05D008202 ORTHO05D010302 4.5e-09 64.7 92 38.0
Eucgr.C03726 Eucalyptus grandis HOM05D008202 ORTHO05D010302 7.7e-09 63.9 89 40.4
Nn8g39054 Nelumbo nucifera HOM05D008202 ORTHO05D010302 1.7e-08 62.8 92 42.4
Ciclev10027039m.g Citrus clementina HOM05D008202 ORTHO05D010302 8.5e-08 60.5 91 45.1
Lalb_Chr14g0371911 Lupinus albus HOM05D008202 ORTHO05D010302 8.5e-08 60.5 68 48.5
ATR0705G156 Amborella trichopoda HOM05D008202 ORTHO05D010302 1.5e-07 59.7 42 61.9
Gohir.D06G066100 Gossypium hirsutum HOM05D008202 ORTHO05D010302 1.9e-07 59.3 95 47.4
Psat1g048280 Pisum sativum HOM05D008202 ORTHO05D010302 1.9e-07 59.3 96 40.6
Mapoly0004s0023 Marchantia polymorpha HOM05D039400 ORTHO05D034304 5.5e-07 57.8 72 45.8
PGR102G0794 Punica granatum HOM05D008202 ORTHO05D010302 2.1e-06 55.8 76 47.4
MBI01_g10122_MAGBIO Magnolia biondii HOM05D003005 ORTHO05D004170 2.7e-06 55.5 76 43.4
HPP92_009087 Vanilla planifolia HOM05D008202 ORTHO05D010302 2.7e-06 55.5 98 36.7
CAN.G1325.3 Capsicum annuum HOM05D001685 ORTHO05D006653 8.0e-06 53.9 84 36.9
unitig_52.g17095 Utricularia gibba HOM05D008202 ORTHO05D010302 8.0e-06 53.9 51 47.1


User provided reference genes

Program Settings