Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.7G213400 Prunus persica HOM05D003538 ORTHO05D004376 1.8e-301 1038.5 542 100.0
MD02G1074500 Malus domestica HOM05D003538 ORTHO05D004376 3.1e-208 728.8 544 72.6
Cfa003115 Carpinus fangiana HOM05D003538 ORTHO05D004376 8.7e-187 657.5 524 67.0
QL02p063126 Quercus lobata HOM05D003538 ORTHO05D004376 1.5e-183 646.7 542 63.5
CiPaw.04G152000 Carya illinoinensis HOM05D003538 ORTHO05D004376 2.3e-171 606.3 541 60.3
Ciclev10007935m.g Citrus clementina HOM05D003538 ORTHO05D004376 6.5e-158 561.6 528 56.1
RcHm_v2.0_Chr2g0092961 Rosa chinensis HOM05D003538 ORTHO05D004376 8.5e-158 561.2 499 62.9
Dinv36743 Davidia involucrata HOM05D003538 ORTHO05D004376 6.8e-155 551.6 552 54.5
Haze_25885 Corylus avellana HOM05D003538 ORTHO05D004376 1.2e-154 550.8 441 65.8
ClCG03G015790 Citrullus lanatus HOM05D003538 ORTHO05D004376 3.7e-153 545.8 542 53.9
FvH4_1g07060 Fragaria vesca HOM05D003538 ORTHO05D004376 6.3e-153 545.0 468 63.5
FAN19G1852 Fragaria x ananassa HOM05D003538 ORTHO05D004376 6.3e-153 545.0 473 63.2
Thecc.09G092900 Theobroma cacao HOM05D003538 ORTHO05D004376 1.4e-152 543.9 539 54.5
FAN26G3060 Fragaria x ananassa HOM05D003538 ORTHO05D004376 1.6e-151 540.4 493 61.3
Atru.chr7.1545 Acer truncatum HOM05D003538 ORTHO05D004376 6.1e-148 528.5 532 57.0
CANSAT56G3152 Cannabis sativa HOM05D003538 ORTHO05D004376 8.0e-148 528.1 539 53.6
Sed0013907 Sechium edule HOM05D003538 ORTHO05D004376 8.8e-147 524.6 541 52.3
GSVIVG01015234001 Vitis vinifera HOM05D003538 ORTHO05D004376 3.7e-145 519.2 540 54.4
TAR626G0286 Trochodendron aralioides HOM05D003538 ORTHO05D004376 2.7e-143 513.1 550 51.8
CSS0008213 Camellia sinensis var. sinensis HOM05D003538 ORTHO05D004376 1.3e-142 510.8 553 52.3
FAN23G1479 Fragaria x ananassa HOM05D003538 ORTHO05D004376 6.6e-142 508.4 476 59.9
Hma1.2p1_0798F.1_g219590 Hydrangea macrophylla HOM05D003538 ORTHO05D004376 4.0e-139 499.2 548 52.0
Hma1.2p1_1074F.1_g254274 Hydrangea macrophylla HOM05D003538 ORTHO05D004376 4.0e-139 499.2 548 52.0
Actinidia29888 Actinidia chinensis HOM05D003538 ORTHO05D004376 2.0e-138 496.9 550 51.8
CsaV3_1G040220 Cucumis sativus L. HOM05D003538 ORTHO05D004376 2.6e-138 496.5 502 53.2
Manes.03G031601 Manihot esculenta HOM05D003538 ORTHO05D004376 2.4e-136 490.0 521 50.5
Duzib168G1022 Durio zibethinus HOM05D003538 ORTHO05D004376 7.8e-135 485.0 488 54.3
CsaV3_UNG062480 Cucumis sativus L. HOM05D003538 ORTHO05D004376 5.0e-134 482.3 528 50.6
TWI34G1305 Tripterygium wilfordii HOM05D003538 ORTHO05D004376 5.6e-133 478.8 544 51.7
MELO3C015449.2 Cucumis melo HOM05D003538 ORTHO05D004376 1.0e-131 474.6 586 46.4
Glyma.07G128300 Glycine max HOM05D003538 ORTHO05D004376 1.4e-131 474.2 526 52.3
Rhsim03G0234300 Rhododendron simsii HOM05D003538 ORTHO05D004376 2.0e-130 470.3 528 50.4
Glyma.01G003600 Glycine max HOM05D003538 ORTHO05D004376 7.5e-130 468.4 526 51.5
Manes.03G034901 Manihot esculenta HOM05D003538 ORTHO05D004376 1.3e-126 457.6 538 47.6
Lj2g0016122 Lotus japonicus HOM05D003538 ORTHO05D004376 8.6e-126 454.9 523 51.1
Lj7A672T62 Lonicera japonica HOM05D003538 ORTHO05D004376 9.5e-125 451.4 545 48.8
Phvul.004G172000 Phaseolus vulgaris HOM05D003538 ORTHO05D004376 1.4e-123 447.6 525 50.7
Nn6g35422 Nelumbo nucifera HOM05D003538 ORTHO05D004376 2.3e-123 446.8 555 46.7
Lalb_Chr24g0393871 Lupinus albus HOM05D003538 ORTHO05D004376 4.4e-122 442.6 526 50.2
Gohir.D07G010500 Gossypium hirsutum HOM05D003538 ORTHO05D004376 5.8e-122 442.2 542 46.7
VMungo0464G1250 Vigna mungo HOM05D003538 ORTHO05D004376 1.7e-121 440.7 526 50.2
Eucgr.C03664 Eucalyptus grandis HOM05D003538 ORTHO05D004376 4.9e-121 439.1 532 47.0
Gorai.001G010900 Gossypium raimondii HOM05D003538 ORTHO05D004376 1.6e-119 434.1 542 46.3
arahy.Tifrunner.gnm1.ann1.60DKDN Arachis hypogaea HOM05D003538 ORTHO05D004376 4.6e-119 432.6 528 47.3
arahy.Tifrunner.gnm1.ann1.X6QCD5 Arachis hypogaea HOM05D003538 ORTHO05D004376 7.8e-119 431.8 536 46.8
Medtr6g091790 Medicago truncatula HOM05D003538 ORTHO05D004376 9.5e-117 424.9 529 49.3
Cc06_g11090 Coffea canephora HOM05D003538 ORTHO05D004376 1.3e-113 414.5 524 45.4
MBI03_g13775_MAGBIO Magnolia biondii HOM05D003538 ORTHO05D004376 2.9e-113 413.3 546 45.6
HanXRQChr02g0044571 Helianthus annuus HOM05D003538 ORTHO05D004376 4.6e-111 406.0 535 44.3
PGSC0003DMG400008432 Solanum tuberosum HOM05D003538 ORTHO05D004376 1.7e-110 404.1 526 45.4
PSO210G5813 Papaver somniferum HOM05D003538 ORTHO05D004376 9.6e-109 398.3 553 43.6
Sopen07g015920 Solanum pennellii HOM05D003538 ORTHO05D004376 9.6e-109 398.3 541 44.2
Gohir.A07G010200 Gossypium hirsutum HOM05D003538 ORTHO05D004376 9.9e-106 388.3 542 43.5
SalBow1G0256 Salvia bowleyana HOM05D003538 ORTHO05D004376 3.8e-105 386.3 533 42.2
PSO210G6318 Papaver somniferum HOM05D003538 ORTHO05D004376 2.4e-104 383.6 554 43.0
Lsat_1_v5_gn_8_87540 Lactuca sativa HOM05D003538 ORTHO05D004376 7.8e-103 378.6 510 42.2
vmacro06276 Vaccinium macrocarpon HOM05D003538 ORTHO05D004376 1.9e-101 374.0 558 42.7
Aqoxy7G04069 Aquilegia oxysepala HOM05D003538 ORTHO05D004376 4.3e-101 372.9 523 43.0
Medtr6g091900 Medicago truncatula HOM05D003538 ORTHO05D004376 2.4e-99 367.1 530 45.3
MSTRG.26404 Avicennia marina HOM05D003538 ORTHO05D004376 1.3e-97 361.3 547 41.0
THA.LOC104814609 Tarenaya hassleriana HOM05D003538 ORTHO05D004376 1.1e-96 358.2 520 42.3
QL02p001408 Quercus lobata HOM05D003538 ORTHO05D004376 1.8e-86 324.3 532 39.8
ECA236G1610 Erigeron canadensis HOM05D003538 ORTHO05D004376 1.9e-85 320.9 425 44.2
Rhsim11G0045200 Rhododendron simsii HOM05D003538 ORTHO05D004376 1.9e-85 320.9 512 41.6
CSS0001901 Camellia sinensis var. sinensis HOM05D003538 ORTHO05D004376 2.5e-85 320.5 523 40.9
COL.COLO4_21041 Corchorus olitorius HOM05D003538 ORTHO05D004376 5.6e-85 319.3 545 36.3
Aa31LG8G16630 Aethionema arabicum HOM05D003538 ORTHO05D004376 6.9e-83 312.4 508 38.0
Actinidia01196 Actinidia chinensis HOM05D003538 ORTHO05D004376 9.0e-83 312.0 520 40.6
Gohir.A05G043100 Gossypium hirsutum HOM05D003538 ORTHO05D004376 2.6e-82 310.5 527 38.1
Gorai.009G045900 Gossypium raimondii HOM05D003538 ORTHO05D004376 3.4e-82 310.1 545 37.4
Duzib168G2161 Durio zibethinus HOM05D003538 ORTHO05D004376 7.6e-82 308.9 543 36.8
Actinidia30305 Actinidia chinensis HOM05D003538 ORTHO05D004376 1.6e-79 301.2 521 39.3
Atru.chr7.1041 Acer truncatum HOM05D003538 ORTHO05D004376 3.5e-79 300.1 538 37.5
PGR044G1201 Punica granatum HOM05D003538 ORTHO05D004376 3.5e-79 300.1 509 37.5
Eucgr.C03022 Eucalyptus grandis HOM05D003538 ORTHO05D004376 3.0e-78 297.0 526 37.6
Ciclev10007991m.g Citrus clementina HOM05D003538 ORTHO05D004376 8.7e-78 295.4 530 37.4
unitig_699.g19305 Utricularia gibba HOM05D003538 ORTHO05D004376 1.5e-77 294.7 519 37.0
CANSAT25G2654 Cannabis sativa HOM05D003538 ORTHO05D004376 7.4e-77 292.4 523 36.9
Lj7C279G1 Lonicera japonica HOM05D003538 ORTHO05D004376 7.4e-77 292.4 481 37.6
TWI32G0386 Tripterygium wilfordii HOM05D003538 ORTHO05D004376 2.4e-75 287.3 493 36.5
FAN26G2436 Fragaria x ananassa HOM05D003538 ORTHO05D004376 4.1e-75 286.6 240 62.9
Sed0023083 Sechium edule HOM05D003538 ORTHO05D004376 1.2e-74 285.0 506 36.2
CsaV3_4G035550 Cucumis sativus L. HOM05D003538 ORTHO05D004376 3.4e-74 283.5 502 36.5
Sc23g0005570 Simmondsia chinensis HOM05D003538 ORTHO05D004376 1.0e-73 282.0 432 37.3
Potri.006G230900 Populus trichocarpa HOM05D003538 ORTHO05D004376 2.9e-73 280.4 520 35.0
Cpa.g.sc7.247 Carica papaya HOM05D003538 ORTHO05D004376 3.2e-72 276.9 268 53.0
Hma1.2p1_0482F.1_g162640 Hydrangea macrophylla HOM05D003538 ORTHO05D004376 4.2e-72 276.6 552 36.6
MELO3C016862.2 Cucumis melo HOM05D003538 ORTHO05D004376 7.2e-72 275.8 499 35.9
Manes.03G031262 Manihot esculenta HOM05D003538 ORTHO05D004376 9.3e-72 275.4 302 48.7
Manes.03G047000 Manihot esculenta HOM05D003538 ORTHO05D004376 1.6e-71 274.6 383 39.7
MSTRG.11666 Avicennia marina HOM05D003538 ORTHO05D004376 2.7e-71 273.9 529 36.5
Manes.03G030833 Manihot esculenta HOM05D003538 ORTHO05D004376 6.1e-71 272.7 277 51.6
HPP92_009156 Vanilla planifolia HOM05D003538 ORTHO05D004376 6.1e-71 272.7 526 35.0
CDE02G0844 Ceratophyllum demersum HOM05D003538 ORTHO05D004376 7.9e-71 272.3 484 39.5
Manes.03G031366 Manihot esculenta HOM05D003538 ORTHO05D004376 7.9e-71 272.3 277 51.6
Cc08_g10420 Coffea canephora HOM05D003538 ORTHO05D004376 3.9e-70 270.0 491 36.7
ClCG05G017780 Citrullus lanatus HOM05D003538 ORTHO05D004376 6.7e-70 269.2 518 34.6
vmacro00153 Vaccinium macrocarpon HOM05D003538 ORTHO05D004376 6.3e-68 262.7 476 37.8
CiPaw.16G029300 Carya illinoinensis HOM05D003538 ORTHO05D004376 8.2e-68 262.3 529 35.2
Migut.A00144 Erythranthe guttata HOM05D003538 ORTHO05D004376 1.1e-67 261.9 528 35.4
Nitab4.5_0001179g0130 Nicotiana tabacum HOM05D003538 ORTHO05D004376 1.8e-67 261.2 497 35.4
Nitab4.5_0001584g0040 Nicotiana tabacum HOM05D003538 ORTHO05D004376 1.8e-67 261.2 497 36.0
Gohir.D05G044800 Gossypium hirsutum HOM05D003538 ORTHO05D004376 2.0e-66 257.7 401 39.9
Solyc08g065440.4 Solanum lycopersicum HOM05D003538 ORTHO05D004376 5.9e-66 256.1 426 37.1
Thecc.09G052400 Theobroma cacao HOM05D003538 ORTHO05D004376 5.9e-66 256.1 397 38.8
Lj5g0027111 Lotus japonicus HOM05D003538 ORTHO05D004376 2.9e-65 253.8 508 34.1
Sopen08g019050 Solanum pennellii HOM05D003538 ORTHO05D004376 2.9e-65 253.8 426 36.6
DCAR_011998 Daucus carota HOM05D003538 ORTHO05D004376 3.8e-65 253.4 292 46.6
AUR62009165 Chenopodium quinoa HOM05D003538 ORTHO05D004376 6.5e-65 252.7 507 34.9
Hma1.2p1_0798F.1_g219600 Hydrangea macrophylla HOM05D003538 ORTHO05D004376 1.6e-63 248.1 258 53.9
Lalb_Chr22g0356041 Lupinus albus HOM05D003538 ORTHO05D004376 1.6e-63 248.1 493 35.7
arahy.Tifrunner.gnm1.ann1.IE7M3R Arachis hypogaea HOM05D003538 ORTHO05D004376 2.1e-63 247.7 523 33.5
Sc18g0001860 Simmondsia chinensis HOM05D003538 ORTHO05D004376 2.7e-63 247.3 281 48.0
AUR62022058 Chenopodium quinoa HOM05D003538 ORTHO05D004376 4.6e-63 246.5 502 34.5
AUR62043933 Chenopodium quinoa HOM05D003538 ORTHO05D004376 4.6e-63 246.5 502 34.5
Medtr6g092160 Medicago truncatula HOM05D003538 ORTHO05D004376 4.6e-63 246.5 299 47.2
Peaxi162Scf00136g00059 Petunia axillaris HOM05D003538 ORTHO05D004376 4.6e-63 246.5 535 34.8
Sabra06G0179100 Salix brachista HOM05D003538 ORTHO05D004376 1.8e-62 244.6 576 31.9
TPR.G13110 Trifolium pratense HOM05D003538 ORTHO05D004376 5.1e-62 243.0 533 35.5
Glyma.17G230200 Glycine max HOM05D003538 ORTHO05D004376 6.7e-62 242.7 499 33.9
Glyma.14G093500 Glycine max HOM05D003538 ORTHO05D004376 3.3e-61 240.4 495 33.7
Phvul.001G034000 Phaseolus vulgaris HOM05D003538 ORTHO05D004376 5.7e-61 239.6 500 34.2
Solyc07g032260.3 Solanum lycopersicum HOM05D003538 ORTHO05D004376 1.3e-60 238.4 271 49.8
Zm00001eb161340 Zea mays HOM05D003538 ORTHO05D004376 2.2e-60 237.7 510 36.5
VMungo0647G0716 Vigna mungo HOM05D003538 ORTHO05D004376 2.8e-60 237.3 505 33.7
Hund03347 Selenicereus undatus HOM05D003538 ORTHO05D004376 4.1e-59 233.4 499 32.7
Medtr1g016740 Medicago truncatula HOM05D003538 ORTHO05D004376 9.1e-59 232.3 431 34.3
Sed0020375 Sechium edule HOM05D003538 ORTHO05D004376 1.5e-58 231.5 411 37.5
PGSC0003DMG400002203 Solanum tuberosum HOM05D003538 ORTHO05D004376 3.4e-58 230.3 439 35.8
Ca_13176_v3 Cicer arietinum L. HOM05D003538 ORTHO05D004376 6.5e-57 226.1 553 31.5
arahy.Tifrunner.gnm1.ann1.QX44E6 Arachis hypogaea HOM05D003538 ORTHO05D004376 1.0e-54 218.8 568 31.0
Oeu039611.1 Olea europaea HOM05D003538 ORTHO05D004376 1.0e-54 218.8 251 49.4
EL10Ac2g03914 Beta vulgaris HOM05D003538 ORTHO05D004376 1.1e-53 215.3 398 34.7
Zm00001eb357710 Zea mays HOM05D003538 ORTHO05D004376 9.7e-53 212.2 511 34.2
Ah.11g044700 Amaranthus hybridus HOM05D003538 ORTHO05D004376 2.8e-52 210.7 496 30.2
Haze_18202 Corylus avellana HOM05D003538 ORTHO05D004376 2.4e-51 207.6 582 30.9
SalBow4G1879 Salvia bowleyana HOM05D003538 ORTHO05D004376 4.5e-50 203.4 533 31.9
GSVIVG01035358001 Vitis vinifera HOM05D003538 ORTHO05D004376 2.2e-49 201.1 268 45.5
Lsat_1_v5_gn_3_24260 Lactuca sativa HOM05D003538 ORTHO05D004376 1.5e-48 198.4 505 33.9
Carub.0006s1031 Capsella rubella HOM05D003538 ORTHO05D004376 2.5e-48 197.6 527 31.3
Cpa.g.sc7.246 Carica papaya HOM05D003538 ORTHO05D004376 4.7e-47 193.4 258 46.1
Dinv27976 Davidia involucrata HOM05D003538 ORTHO05D004376 4.7e-47 193.4 279 40.5
CARHR201410 Cardamine hirsuta HOM05D003538 ORTHO05D004376 2.6e-45 187.6 517 30.8
Aa31LG3G15420 Aethionema arabicum HOM05D003538 ORTHO05D004376 7.5e-45 186.0 487 29.4
AL6G22530 Arabidopsis lyrata HOM05D003538 ORTHO05D004376 2.2e-44 184.5 521 30.3
AT5G11780 Arabidopsis thaliana HOM05D003538 ORTHO05D004376 4.8e-44 183.3 517 29.6
Sopen07g015930 Solanum pennellii HOM05D003538 ORTHO05D004376 4.8e-44 183.3 259 44.4
HanXRQChr06g0173831 Helianthus annuus HOM05D003538 ORTHO05D004376 1.1e-43 182.2 424 32.5
Thhalv10013348m.g Eutrema salsugineum HOM05D003538 ORTHO05D004376 1.8e-43 181.4 518 30.5
RcHm_v2.0_Chr4g0406051 Rosa chinensis HOM05D003538 ORTHO05D004376 4.1e-43 180.3 161 59.0
Medtr6g092190 Medicago truncatula HOM05D003538 ORTHO05D004376 7.0e-43 179.5 260 44.6
RcHm_v2.0_Chr4g0425381 Rosa chinensis HOM05D003538 ORTHO05D004376 1.3e-41 175.3 161 58.4
Os01g0600300 Oryza sativa ssp. japonica HOM05D003538 ORTHO05D004376 2.5e-40 171.0 305 37.0
BraA10t44658Z Brassica rapa HOM05D003538 ORTHO05D004376 2.8e-36 157.5 461 29.5
A10p25960 Brassica napus HOM05D003538 ORTHO05D004376 1.1e-35 155.6 462 29.4
BolC9t59332H Brassica oleracea HOM05D003538 ORTHO05D004376 1.4e-35 155.2 523 28.7
BcaC04g19195 Brassica carinata HOM05D003538 ORTHO05D004376 4.1e-35 153.7 519 28.7
C09p65040 Brassica napus HOM05D003538 ORTHO05D004376 4.1e-35 153.7 523 28.9
Oeu018651.1 Olea europaea HOM05D003538 ORTHO05D004376 7.2e-32 142.9 272 35.7
Thecc.06G128700 Theobroma cacao HOM05D003538 ORTHO05D004376 1.2e-31 142.1 128 52.3
SalBow4G0582 Salvia bowleyana HOM05D003538 ORTHO05D004376 2.8e-31 141.0 252 35.7
SEGI_33762 Sequoiadendron giganteum HOM05D003538 ORTHO05D004376 2.8e-31 141.0 490 29.6
SGA_v2.0_scaffold734G53534 Striga asiatica HOM05D003538 ORTHO05D004376 7.0e-27 126.3 247 35.6
ECA246G1935 Erigeron canadensis HOM05D003538 ORTHO05D004376 3.5e-26 124.0 270 33.7
Psat6g019320 Pisum sativum HOM05D003538 ORTHO05D004376 5.9e-26 123.2 177 40.7
ATR0789G133 Amborella trichopoda HOM05D003538 ORTHO05D004376 1.1e-24 119.0 274 32.8
Sc18g0001870 Simmondsia chinensis HOM05D003538 ORTHO05D004376 1.6e-23 115.2 198 39.4
ATR0789G162 Amborella trichopoda HOM05D003538 ORTHO05D004376 2.1e-23 114.8 282 28.4
Oeu021470.1 Olea europaea HOM05D003538 ORTHO05D004376 3.6e-23 114.0 117 46.2
DCAR_004434 Daucus carota HOM05D003538 ORTHO05D004376 1.1e-19 102.4 145 42.1
Eucgr.L03304 Eucalyptus grandis HOM05D003538 ORTHO05D004376 5.9e-18 96.7 237 32.1
SEGI_10797 Sequoiadendron giganteum HOM05D003538 ORTHO05D004376 5.9e-18 96.7 286 30.4
Mapoly0075s0033 Marchantia polymorpha HOM05D003538 ORTHO05D004376 6.6e-17 93.2 547 22.7
SGA_v2.0_scaffold187G40255 Striga asiatica HOM05D003538 ORTHO05D004376 3.4e-13 80.9 157 32.5
AagrBONN_evm.TU.Sc2ySwM_344.1097 Anthoceros agrestis HOM05D003538 ORTHO05D004376 4.1e-11 73.9 476 24.2
Lj7A278T10 Lonicera japonica HOM05D003538 ORTHO05D004376 2.0e-10 71.6 140 32.1
BcaC06g31881 Brassica carinata HOM05D000161 ORTHO05D000111 8.1e-07 59.7 114 36.0


User provided reference genes

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