Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.7G211400 Prunus persica HOM05D005692 ORTHO05D006953 1.5e-52 209.1 97 100.0
MD02G1077000 Malus domestica HOM05D005692 ORTHO05D006953 6.8e-50 200.3 97 91.8
MD15G1205700 Malus domestica HOM05D005692 ORTHO05D006953 7.6e-49 196.8 97 90.7
FvH4_1g07240 Fragaria vesca HOM05D005692 ORTHO05D006953 9.2e-47 189.9 95 87.4
FAN26G0193 Fragaria x ananassa HOM05D005692 ORTHO05D006953 9.2e-47 189.9 95 87.4
RcHm_v2.0_Chr2g0093151 Rosa chinensis HOM05D005692 ORTHO05D006953 1.2e-46 189.5 95 86.3
FAN19G2784 Fragaria x ananassa HOM05D005692 ORTHO05D006953 1.7e-45 185.7 95 85.3
Ah.09g223860 Amaranthus hybridus HOM05D005692 ORTHO05D006953 1.5e-44 182.6 93 83.9
Gorai.005G027900 Gossypium raimondii HOM05D005692 ORTHO05D006953 2.5e-44 181.8 97 80.4
AUR62039390 Chenopodium quinoa HOM05D005692 ORTHO05D006953 4.3e-44 181.0 93 81.7
ClCG03G015670 Citrullus lanatus HOM05D005692 ORTHO05D006953 9.6e-44 179.9 94 83.0
COL.COLO4_18212 Corchorus olitorius HOM05D005692 ORTHO05D006953 9.6e-44 179.9 92 82.6
MELO3C015461.2 Cucumis melo HOM05D005692 ORTHO05D006953 9.6e-44 179.9 94 80.9
FvH4_1g24820 Fragaria vesca HOM05D005692 ORTHO05D006953 9.6e-44 179.9 95 82.1
Oeu039606.1 Olea europaea HOM05D005692 ORTHO05D006953 1.2e-43 179.5 93 82.8
Potri.012G001800 Populus trichocarpa HOM05D005692 ORTHO05D006953 1.2e-43 179.5 91 83.5
Sabra12G0019500 Salix brachista HOM05D005692 ORTHO05D006953 1.2e-43 179.5 91 83.5
Sabra12G0019700 Salix brachista HOM05D005692 ORTHO05D006953 1.2e-43 179.5 91 83.5
CsaV3_1G040340 Cucumis sativus L. HOM05D005692 ORTHO05D006953 2.1e-43 178.7 94 80.9
vmacro06285 Vaccinium macrocarpon HOM05D005692 ORTHO05D006953 2.1e-43 178.7 93 79.6
vmacro23428 Vaccinium macrocarpon HOM05D005692 ORTHO05D006953 2.1e-43 178.7 93 79.6
CANSAT78G0210 Cannabis sativa HOM05D005692 ORTHO05D006953 2.8e-43 178.3 94 77.7
Thecc.09G090700 Theobroma cacao HOM05D005692 ORTHO05D006953 2.8e-43 178.3 98 79.6
EL10Ac2g04637 Beta vulgaris HOM05D005692 ORTHO05D006953 3.6e-43 177.9 93 79.6
Duzib151G0847 Durio zibethinus HOM05D005692 ORTHO05D006953 4.7e-43 177.6 98 78.6
Ah.10g037300 Amaranthus hybridus HOM05D005692 ORTHO05D006953 6.2e-43 177.2 93 81.7
FAN23G0510 Fragaria x ananassa HOM05D005692 ORTHO05D006953 6.2e-43 177.2 90 85.6
FAN26G1568 Fragaria x ananassa HOM05D005692 ORTHO05D006953 6.2e-43 177.2 90 85.6
Gohir.D02G022500 Gossypium hirsutum HOM05D005692 ORTHO05D006953 6.2e-43 177.2 98 79.6
Manes.03G032800 Manihot esculenta HOM05D005692 ORTHO05D006953 6.2e-43 177.2 98 78.6
Sc14g0000750 Simmondsia chinensis HOM05D005692 ORTHO05D006953 6.2e-43 177.2 93 79.6
Cc06_g11300 Coffea canephora HOM05D005692 ORTHO05D006953 8.1e-43 176.8 95 80.0
Gohir.A02G019200 Gossypium hirsutum HOM05D005692 ORTHO05D006953 1.1e-42 176.4 92 81.5
Eucgr.C03889 Eucalyptus grandis HOM05D005692 ORTHO05D006953 1.4e-42 176.0 91 84.6
Psat6g162800 Pisum sativum HOM05D005692 ORTHO05D006953 1.4e-42 176.0 93 79.6
Sopen12g003750 Solanum pennellii HOM05D005692 ORTHO05D006953 1.4e-42 176.0 93 79.6
FAN19G0937 Fragaria x ananassa HOM05D005692 ORTHO05D006953 1.8e-42 175.6 95 82.1
Glyma.18G151700 Glycine max HOM05D005692 ORTHO05D006953 1.8e-42 175.6 97 77.3
Nitab4.5_0000540g0260 Nicotiana tabacum HOM05D005692 ORTHO05D006953 1.8e-42 175.6 93 79.6
Nitab4.5_0009931g0010 Nicotiana tabacum HOM05D005692 ORTHO05D006953 1.8e-42 175.6 93 79.6
Psat6g183720 Pisum sativum HOM05D005692 ORTHO05D006953 1.8e-42 175.6 93 79.6
Hund14283 Selenicereus undatus HOM05D005692 ORTHO05D006953 1.8e-42 175.6 93 79.6
Dinv36757 Davidia involucrata HOM05D005692 ORTHO05D006953 2.4e-42 175.3 98 77.6
Glyma.08G343600 Glycine max HOM05D005692 ORTHO05D006953 2.4e-42 175.3 97 77.3
Peaxi162Scf00015g00716 Petunia axillaris HOM05D005692 ORTHO05D006953 2.4e-42 175.3 93 79.6
PGR102G3100 Punica granatum HOM05D005692 ORTHO05D006953 2.4e-42 175.3 91 79.1
Cfa003097 Carpinus fangiana HOM05D005692 ORTHO05D006953 3.1e-42 174.9 91 80.2
Solyc12g008810.2 Solanum lycopersicum HOM05D005692 ORTHO05D006953 3.1e-42 174.9 93 78.5
PGSC0003DMG400000281 Solanum tuberosum HOM05D005692 ORTHO05D006953 3.1e-42 174.9 93 78.5
Ca_07409_v3 Cicer arietinum L. HOM05D005692 ORTHO05D006953 6.9e-42 173.7 93 80.6
Migut.J00600 Erythranthe guttata HOM05D005692 ORTHO05D006953 9.0e-42 173.3 93 78.5
Migut.J01065 Erythranthe guttata HOM05D005692 ORTHO05D006953 9.0e-42 173.3 93 78.5
Atru.BG.21.p Acer truncatum HOM05D005692 ORTHO05D006953 1.2e-41 172.9 89 82.0
Nn6g35447 Nelumbo nucifera HOM05D005692 ORTHO05D006953 1.5e-41 172.6 98 77.6
Rhsim03G0233100 Rhododendron simsii HOM05D005692 ORTHO05D006953 1.5e-41 172.6 94 75.5
CAN.G1241.20 Capsicum annuum HOM05D005692 ORTHO05D006953 2.0e-41 172.2 93 75.3
Medtr7g051450 Medicago truncatula HOM05D005692 ORTHO05D006953 2.0e-41 172.2 91 79.1
TWI34G0948 Tripterygium wilfordii HOM05D005692 ORTHO05D006953 2.0e-41 172.2 91 81.3
CiPaw.03G217300 Carya illinoinensis HOM05D005692 ORTHO05D006953 2.6e-41 171.8 98 75.5
Cpa.g.sc20.158 Carica papaya HOM05D005692 ORTHO05D006953 3.4e-41 171.4 91 82.4
HanXRQChr10g0319271 Helianthus annuus HOM05D005692 ORTHO05D006953 3.4e-41 171.4 92 76.1
Lalb_Chr03g0041061 Lupinus albus HOM05D005692 ORTHO05D006953 3.4e-41 171.4 97 72.2
Phvul.008G136000 Phaseolus vulgaris HOM05D005692 ORTHO05D006953 4.4e-41 171.0 93 76.3
Sed0014309 Sechium edule HOM05D005692 ORTHO05D006953 4.4e-41 171.0 92 79.3
Medtr7g021900 Medicago truncatula HOM05D005692 ORTHO05D006953 5.8e-41 170.6 91 79.1
Nitab4.5_0003152g0130 Nicotiana tabacum HOM05D005692 ORTHO05D006953 5.8e-41 170.6 93 78.5
arahy.Tifrunner.gnm1.ann1.JM0M9B Arachis hypogaea HOM05D005692 ORTHO05D006953 7.6e-41 170.2 94 75.5
arahy.Tifrunner.gnm1.ann1.VY1HWT Arachis hypogaea HOM05D005692 ORTHO05D006953 7.6e-41 170.2 94 75.5
CSS0005546 Camellia sinensis var. sinensis HOM05D005692 ORTHO05D006953 7.6e-41 170.2 98 75.5
CSS0025569 Camellia sinensis var. sinensis HOM05D005692 ORTHO05D006953 7.6e-41 170.2 98 75.5
Nn8g38892 Nelumbo nucifera HOM05D005692 ORTHO05D006953 7.6e-41 170.2 98 75.5
Phvul.005G056600 Phaseolus vulgaris HOM05D005692 ORTHO05D006953 7.6e-41 170.2 93 75.3
Psat6g183640 Pisum sativum HOM05D005692 ORTHO05D006953 7.6e-41 170.2 93 77.4
DCAR_011984 Daucus carota HOM05D005692 ORTHO05D006953 9.9e-41 169.9 93 72.0
ECA234G3968 Erigeron canadensis HOM05D005692 ORTHO05D006953 1.3e-40 169.5 92 73.9
Migut.H00760 Erythranthe guttata HOM05D005692 ORTHO05D006953 1.7e-40 169.1 94 75.5
Lsat_1_v5_gn_5_145440 Lactuca sativa HOM05D005692 ORTHO05D006953 1.7e-40 169.1 90 75.6
Atru.BG.266.p Acer truncatum HOM05D005692 ORTHO05D006953 2.2e-40 168.7 89 79.8
Ciclev10010392m.g Citrus clementina HOM05D005692 ORTHO05D006953 2.2e-40 168.7 91 75.8
Duzib187G1084 Durio zibethinus HOM05D005692 ORTHO05D006953 2.2e-40 168.7 92 75.0
AUR62033506 Chenopodium quinoa HOM05D005692 ORTHO05D006953 4.9e-40 167.5 113 66.4
Lj1g0023726 Lotus japonicus HOM05D005692 ORTHO05D006953 4.9e-40 167.5 93 75.3
Phvul.008G136200 Phaseolus vulgaris HOM05D005692 ORTHO05D006953 4.9e-40 167.5 93 75.3
TAR626G0225 Trochodendron aralioides HOM05D005692 ORTHO05D006953 6.4e-40 167.2 98 73.5
HanXRQChr12g0354791 Helianthus annuus HOM05D005692 ORTHO05D006953 1.1e-39 166.4 92 72.8
Psat6g183440 Pisum sativum HOM05D005692 ORTHO05D006953 2.4e-39 165.2 93 76.3
Migut.H01159 Erythranthe guttata HOM05D005692 ORTHO05D006953 4.2e-39 164.5 93 74.2
SGA_v2.0_scaffold62G21600 Striga asiatica HOM05D005692 ORTHO05D006953 4.2e-39 164.5 93 74.2
THA.LOC104801884 Tarenaya hassleriana HOM05D005692 ORTHO05D006953 4.2e-39 164.5 94 75.5
Duzib187G0878 Durio zibethinus HOM05D005692 ORTHO05D006953 7.1e-39 163.7 92 77.2
HPP92_009139 Vanilla planifolia HOM05D005692 ORTHO05D006953 7.1e-39 163.7 92 73.9
MBI13_g44212_MAGBIO Magnolia biondii HOM05D005692 ORTHO05D006953 2.7e-38 161.8 98 70.4
MBI14_g41836_MAGBIO Magnolia biondii HOM05D005692 ORTHO05D006953 2.7e-38 161.8 98 70.4
SGA_v2.0_scaffold852G53671 Striga asiatica HOM05D005692 ORTHO05D006953 2.7e-38 161.8 93 73.1
VMungo1383G2743 Vigna mungo HOM05D005692 ORTHO05D006953 2.7e-38 161.8 115 63.5
GSVIVG01015215001 Vitis vinifera HOM05D005692 ORTHO05D006953 2.3e-37 158.7 98 70.4
TWI32G0831 Tripterygium wilfordii HOM05D005692 ORTHO05D006953 3.0e-37 158.3 91 76.9
unitig_748.g8121 Utricularia gibba HOM05D005692 ORTHO05D006953 8.7e-37 156.8 93 73.1
PSO210G0626 Papaver somniferum HOM05D005692 ORTHO05D006953 1.1e-36 156.4 89 69.7
PSO210G2337 Papaver somniferum HOM05D005692 ORTHO05D006953 1.1e-36 156.4 89 69.7
SGA_v2.0_scaffold33G13431 Striga asiatica HOM05D005692 ORTHO05D006953 1.1e-36 156.4 97 69.1
Actinidia29885 Actinidia chinensis HOM05D003753 ORTHO05D005081 2.5e-36 155.2 86 74.4
CARHR237500 Cardamine hirsuta HOM05D005692 ORTHO05D006953 7.3e-36 153.7 95 69.5
Aa31LG2G20910 Aethionema arabicum HOM05D005692 ORTHO05D006953 9.6e-36 153.3 95 69.5
BcaC09g51744 Brassica carinata HOM05D005692 ORTHO05D006953 9.6e-36 153.3 95 69.5
Thhalv10026646m.g Eutrema salsugineum HOM05D005692 ORTHO05D006953 1.3e-35 152.9 95 69.5
AL7G22650 Arabidopsis lyrata HOM05D005692 ORTHO05D006953 1.6e-35 152.5 93 69.9
AT4G29660 Arabidopsis thaliana HOM05D005692 ORTHO05D006953 1.6e-35 152.5 93 69.9
Carub.0007s1086 Capsella rubella HOM05D005692 ORTHO05D006953 1.6e-35 152.5 93 69.9
ATR0602G199 Amborella trichopoda HOM05D005692 ORTHO05D006953 3.6e-35 151.4 91 70.3
SHI00379 Sapria himalayana HOM05D005692 ORTHO05D006953 3.6e-35 151.4 78 79.5
BcaC09g52211 Brassica carinata HOM05D005692 ORTHO05D006953 4.8e-35 151.0 93 68.8
A01p08470 Brassica napus HOM05D005692 ORTHO05D006953 4.8e-35 151.0 93 68.8
C01p09830 Brassica napus HOM05D005692 ORTHO05D006953 4.8e-35 151.0 93 68.8
BolC1t00945H Brassica oleracea HOM05D005692 ORTHO05D006953 4.8e-35 151.0 93 68.8
BraA01t00794Z Brassica rapa HOM05D005692 ORTHO05D006953 4.8e-35 151.0 93 68.8
Nitab4.5_0003079g0020 Nicotiana tabacum HOM05D005692 ORTHO05D006953 8.1e-35 150.2 81 79.0
Sp7g27450 Schrenkiella parvula HOM05D005692 ORTHO05D006953 8.1e-35 150.2 93 69.9
Sp3g29900 Schrenkiella parvula HOM05D005692 ORTHO05D006953 1.1e-34 149.8 93 71.0
Os05g0540200 Oryza sativa ssp. japonica HOM05D005692 ORTHO05D006953 1.8e-34 149.1 93 69.9
Peaxi162Scf00354g00223 Petunia axillaris HOM05D005692 ORTHO05D006953 1.8e-34 149.1 93 67.7
Aqoxy4G03142 Aquilegia oxysepala HOM05D005692 ORTHO05D006953 2.0e-33 145.6 88 65.9
Nitab4.5_0000095g0140 Nicotiana tabacum HOM05D005692 ORTHO05D006953 9.9e-33 143.3 104 61.5
Nitab4.5_0008958g0020 Nicotiana tabacum HOM05D005692 ORTHO05D006953 7.9e-30 133.7 78 73.1
Nitab4.5_0004795g0020 Nicotiana tabacum HOM05D005692 ORTHO05D006953 3.0e-29 131.7 80 70.0
Peaxi162Scf00498g00124 Petunia axillaris HOM05D005692 ORTHO05D006953 3.9e-29 131.3 69 81.2
Aqoxy1G00378 Aquilegia oxysepala HOM05D005692 ORTHO05D006953 1.9e-28 129.0 90 60.0
CDE06G0459 Ceratophyllum demersum HOM05D005692 ORTHO05D006953 5.6e-28 127.5 74 71.6
SHI21206 Sapria himalayana HOM05D005692 ORTHO05D006953 5.3e-26 120.9 65 75.4
CDE06G1459 Ceratophyllum demersum HOM05D005692 ORTHO05D006953 5.8e-25 117.5 74 70.3
TPR.G24304 Trifolium pratense HOM05D005692 ORTHO05D006953 7.6e-25 117.1 209 33.5
FAN19G3189 Fragaria x ananassa HOM05D005692 ORTHO05D006953 1.1e-23 113.2 74 67.6
Psat0s10921g0080 Pisum sativum HOM05D005692 ORTHO05D006953 1.0e-21 106.7 61 75.4
SGA_v2.0_scaffold33G13433 Striga asiatica HOM05D000524 ORTHO05D000381 2.3e-21 105.5 61 73.8
Mapoly0063s0096 Marchantia polymorpha HOM05D005692 ORTHO05D006953 3.2e-15 85.1 66 56.1
CBR_g36562 Chara braunii HOM05D005692 ORTHO05D006953 2.1e-14 82.4 70 48.6
Zm00001eb294300 Zea mays HOM05D005692 ORTHO05D006953 9.7e-12 73.6 61 55.7
Haze_25902 Corylus avellana HOM05D001256 ORTHO05D001141 3.1e-10 68.6 36 72.2
Pp3c13_20310 Physcomitrium patens HOM05D005692 ORTHO05D006953 1.2e-06 56.6 57 42.1


User provided reference genes

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