Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.7G206700 Prunus persica HOM05D003238 ORTHO05D003571 1.3e-85 320.1 212 100.0
MD15G1209800 Malus domestica HOM05D003238 ORTHO05D003571 3.1e-63 245.7 211 75.8
MD02G1082200 Malus domestica HOM05D003238 ORTHO05D003571 4.5e-62 241.9 211 72.5
FAN26G0800 Fragaria x ananassa HOM05D003238 ORTHO05D003571 8.5e-53 211.1 213 64.8
FAN23G0786 Fragaria x ananassa HOM05D003238 ORTHO05D003571 2.5e-52 209.5 213 66.2
FAN28G2679 Fragaria x ananassa HOM05D003238 ORTHO05D003571 3.2e-52 209.1 213 64.8
FAN26G1453 Fragaria x ananassa HOM05D003238 ORTHO05D003571 7.9e-51 204.5 213 62.9
RcHm_v2.0_Chr2g0093691 Rosa chinensis HOM05D003238 ORTHO05D003571 6.7e-50 201.4 207 63.3
FvH4_1g07820 Fragaria vesca HOM05D003238 ORTHO05D003571 1.5e-49 200.3 212 63.2
FAN19G2918 Fragaria x ananassa HOM05D003238 ORTHO05D003571 1.5e-49 200.3 212 63.2
Cfa003064 Carpinus fangiana HOM05D003238 ORTHO05D003571 3.2e-44 182.6 214 59.8
QL02p062228 Quercus lobata HOM05D003238 ORTHO05D003571 2.7e-35 152.9 211 54.5
Haze_25933 Corylus avellana HOM05D003238 ORTHO05D003571 9.7e-33 144.4 212 52.4
TWI63G0468 Tripterygium wilfordii HOM05D003238 ORTHO05D003571 8.2e-32 141.4 212 49.1
Ciclev10009462m.g Citrus clementina HOM05D003238 ORTHO05D003571 3.1e-31 139.4 201 50.7
MSTRG.6003 Avicennia marina HOM05D003238 ORTHO05D003571 1.7e-29 133.7 215 51.6
CiPaw.03G213000 Carya illinoinensis HOM05D003238 ORTHO05D003571 2.9e-29 132.9 179 53.6
PGSC0003DMG400000275 Solanum tuberosum HOM05D003238 ORTHO05D003571 8.5e-29 131.3 205 51.2
CANSAT56G2721 Cannabis sativa HOM05D003238 ORTHO05D003571 1.1e-28 131.0 197 51.3
Rhsim05G0017200 Rhododendron simsii HOM05D003238 ORTHO05D003571 3.2e-28 129.4 223 44.4
Solyc12g008950.2 Solanum lycopersicum HOM05D003238 ORTHO05D003571 3.6e-27 125.9 191 51.8
Medtr2g039890 Medicago truncatula HOM05D003238 ORTHO05D003571 6.1e-27 125.2 195 49.2
Sopen12g003880 Solanum pennellii HOM05D003238 ORTHO05D003571 1.0e-26 124.4 204 49.5
Peaxi162Scf00498g00436 Petunia axillaris HOM05D003238 ORTHO05D003571 3.0e-26 122.9 186 49.5
TWI32G0644 Tripterygium wilfordii HOM05D003238 ORTHO05D003571 1.5e-25 120.6 210 46.2
Actinidia25242 Actinidia chinensis HOM05D003238 ORTHO05D003571 3.4e-25 119.4 211 37.0
Lj4C292G2 Lonicera japonica HOM05D003238 ORTHO05D003571 5.7e-25 118.6 229 43.7
vmacro17137 Vaccinium macrocarpon HOM05D003238 ORTHO05D003571 9.8e-25 117.9 206 45.6
Ca_26161_v3 Cicer arietinum L. HOM05D003238 ORTHO05D003571 1.7e-24 117.1 185 41.1
Psat1g140480 Pisum sativum HOM05D003238 ORTHO05D003571 1.7e-24 117.1 200 47.5
GSVIVG01015179001 Vitis vinifera HOM05D003238 ORTHO05D003571 3.7e-24 115.9 187 50.8
Dinv36782 Davidia involucrata HOM05D003238 ORTHO05D003571 4.8e-24 115.5 217 44.2
Oeu004201.1 Olea europaea HOM05D003238 ORTHO05D003571 8.3e-24 114.8 268 38.8
Eucgr.C00871 Eucalyptus grandis HOM05D003238 ORTHO05D003571 1.4e-23 114.0 215 38.6
Oeu017609.1 Olea europaea HOM05D003238 ORTHO05D003571 3.1e-23 112.8 217 44.7
Glyma.15G170900 Glycine max HOM05D003238 ORTHO05D003571 1.6e-22 110.5 199 43.2
Hma1.2p1_0169F.1_g074900 Hydrangea macrophylla HOM05D003238 ORTHO05D003571 5.9e-22 108.6 214 46.3
SGA_v2.0_scaffold10G05235 Striga asiatica HOM05D002348 ORTHO05D002512 1.0e-21 107.8 218 45.0
TPR.G13426 Trifolium pratense HOM05D003238 ORTHO05D003571 1.3e-21 107.5 189 48.7
Migut.J00580 Erythranthe guttata HOM05D003238 ORTHO05D003571 5.0e-21 105.5 183 41.0
MD13G1283500 Malus domestica HOM05D003238 ORTHO05D003571 6.5e-21 105.1 102 68.6
Nitab4.5_0002824g0070 Nicotiana tabacum HOM05D003238 ORTHO05D003571 1.9e-20 103.6 205 43.9
PGR142G0437 Punica granatum HOM05D003238 ORTHO05D003571 4.7e-19 99.0 236 33.5
Lj6g0026431 Lotus japonicus HOM05D003238 ORTHO05D003571 1.4e-18 97.4 196 46.4
ECA236G3496 Erigeron canadensis HOM05D003238 ORTHO05D003571 1.8e-18 97.1 209 37.3
Nn6g35523 Nelumbo nucifera HOM05D003238 ORTHO05D003571 3.0e-18 96.3 196 44.9
Lalb_Chr08g0232341 Lupinus albus HOM05D003238 ORTHO05D003571 3.4e-17 92.8 202 33.7
Cfa003563 Carpinus fangiana HOM05D003238 ORTHO05D003571 2.2e-16 90.1 88 73.9
TAR624G1148 Trochodendron aralioides HOM05D003238 ORTHO05D003571 2.2e-16 90.1 91 70.3
Phvul.009G231100 Phaseolus vulgaris HOM05D003238 ORTHO05D003571 1.4e-15 87.4 161 36.6
Dinv37898 Davidia involucrata HOM05D003238 ORTHO05D003571 2.4e-15 86.7 85 72.9
arahy.Tifrunner.gnm1.ann1.57GLQM Arachis hypogaea HOM05D003238 ORTHO05D003571 5.4e-15 85.5 181 34.3
DCAR_031341 Daucus carota HOM05D003238 ORTHO05D003571 5.4e-15 85.5 168 35.1
Haze_15983 Corylus avellana HOM05D003238 ORTHO05D003571 1.2e-14 84.3 89 73.0
Thecc.06G114200 Theobroma cacao HOM05D003238 ORTHO05D003571 4.5e-14 82.4 88 70.5
MELO3C006025.2 Cucumis melo HOM05D003238 ORTHO05D003571 1.7e-13 80.5 216 31.0
Aqoxy7G04029 Aquilegia oxysepala HOM05D003238 ORTHO05D003571 2.3e-13 80.1 90 68.9
COL.COLO4_30681 Corchorus olitorius HOM05D003238 ORTHO05D003571 2.3e-13 80.1 88 69.3
Lsat_1_v5_gn_8_86760 Lactuca sativa HOM05D003238 ORTHO05D003571 2.9e-13 79.7 183 31.1
Actinidia39103 Actinidia chinensis HOM05D003238 ORTHO05D003571 3.8e-13 79.3 85 69.4
THA.LOC104813494 Tarenaya hassleriana HOM05D003238 ORTHO05D003571 5.0e-13 79.0 182 36.3
Duzib168G0217 Durio zibethinus HOM05D003238 ORTHO05D003571 6.6e-13 78.6 95 65.3
Thecc.09G086100 Theobroma cacao HOM05D003238 ORTHO05D003571 6.6e-13 78.6 92 67.4
arahy.Tifrunner.gnm1.ann1.ZSY109 Arachis hypogaea HOM05D003238 ORTHO05D003571 1.1e-12 77.8 181 32.0
CiPaw.01G223100 Carya illinoinensis HOM05D003238 ORTHO05D003571 1.1e-12 77.8 82 74.4
Gohir.D10G059800 Gossypium hirsutum HOM05D003238 ORTHO05D003571 1.1e-12 77.8 88 68.2
QL05p009982 Quercus lobata HOM05D003238 ORTHO05D003571 1.1e-12 77.8 92 66.3
BraA10t43522Z Brassica rapa HOM05D003238 ORTHO05D003571 1.5e-12 77.4 92 47.8
HanXRQChr04g0126171 Helianthus annuus HOM05D003238 ORTHO05D003571 1.5e-12 77.4 182 33.0
Duzib160G0096 Durio zibethinus HOM05D003238 ORTHO05D003571 1.9e-12 77.0 88 64.8
Rhsim08G0235200 Rhododendron simsii HOM05D003238 ORTHO05D003571 2.5e-12 76.6 85 69.4
PSO210G2488 Papaver somniferum HOM05D003238 ORTHO05D003571 3.3e-12 76.3 88 67.0
Zm00001eb310990 Zea mays HOM05D003238 ORTHO05D003571 3.3e-12 76.3 168 35.7
Glyma.08G191200 Glycine max HOM05D003238 ORTHO05D003571 4.3e-12 75.9 88 64.8
Gorai.011G063800 Gossypium raimondii HOM05D003238 ORTHO05D003571 4.3e-12 75.9 88 67.0
Glyma.07G008200 Glycine max HOM05D003238 ORTHO05D003571 5.6e-12 75.5 88 63.6
Actinidia39710 Actinidia chinensis HOM05D003238 ORTHO05D003571 9.5e-12 74.7 86 68.6
Lalb_Chr04g0263271 Lupinus albus HOM05D003238 ORTHO05D003571 9.5e-12 74.7 91 63.7
MBI04_g36912_MAGBIO Magnolia biondii HOM05D003238 ORTHO05D003571 9.5e-12 74.7 75 73.3
PSO210G1081 Papaver somniferum HOM05D003238 ORTHO05D003571 9.5e-12 74.7 88 68.2
Psat4g187480 Pisum sativum HOM05D003238 ORTHO05D003571 9.5e-12 74.7 91 61.5
Gohir.A10G058000 Gossypium hirsutum HOM05D003238 ORTHO05D003571 1.2e-11 74.3 88 67.0
CSS0012761 Camellia sinensis var. sinensis HOM05D003238 ORTHO05D003571 1.6e-11 73.9 89 66.3
CSS0032672 Camellia sinensis var. sinensis HOM05D003238 ORTHO05D003571 1.6e-11 73.9 89 66.3
CsaV3_7G034700 Cucumis sativus L. HOM05D003238 ORTHO05D003571 1.6e-11 73.9 91 62.6
DCAR_031339 Daucus carota HOM05D003238 ORTHO05D003571 2.1e-11 73.6 159 34.0
Phvul.010G137200 Phaseolus vulgaris HOM05D003238 ORTHO05D003571 2.1e-11 73.6 88 65.9
PGR102G1556 Punica granatum HOM05D003238 ORTHO05D003571 2.1e-11 73.6 87 64.4
Sed0015805 Sechium edule HOM05D003238 ORTHO05D003571 2.1e-11 73.6 90 64.4
Ciclev10026836m.g Citrus clementina HOM05D003238 ORTHO05D003571 4.7e-11 72.4 92 62.0
Prupe.3G046400 Prunus persica HOM05D003238 ORTHO05D003571 6.1e-11 72.0 75 54.7
BcaC03g14186 Brassica carinata HOM05D003238 ORTHO05D003571 8.0e-11 71.6 195 31.3
MELO3C024380.2 Cucumis melo HOM05D003238 ORTHO05D003571 8.0e-11 71.6 81 65.4
CsaV3_3G008070 Cucumis sativus L. HOM05D003238 ORTHO05D003571 8.0e-11 71.6 184 29.9
CDE05G2517 Ceratophyllum demersum HOM05D003238 ORTHO05D003571 1.0e-10 71.2 176 42.6
Cc04_g01740 Coffea canephora HOM05D003238 ORTHO05D003571 1.0e-10 71.2 78 69.2
Lj3g0007714 Lotus japonicus HOM05D003238 ORTHO05D003571 1.0e-10 71.2 84 65.5
Manes.16G100500 Manihot esculenta HOM05D003238 ORTHO05D003571 1.4e-10 70.9 130 45.4
Nitab4.5_0005918g0030 Nicotiana tabacum HOM05D003238 ORTHO05D003571 1.4e-10 70.9 87 67.8
TWI79G0340 Tripterygium wilfordii HOM05D003238 ORTHO05D003571 1.4e-10 70.9 91 61.5
Gorai.001G012800 Gossypium raimondii HOM05D003238 ORTHO05D003571 1.8e-10 70.5 130 50.0
THA.LOC109116473 Tarenaya hassleriana HOM05D003238 ORTHO05D003571 1.8e-10 70.5 88 64.8
BcaC04g20028 Brassica carinata HOM05D003238 ORTHO05D003571 2.3e-10 70.1 50 66.0
BolC9t57711H Brassica oleracea HOM05D003238 ORTHO05D003571 2.3e-10 70.1 50 66.0
Medtr8g017610 Medicago truncatula HOM05D003238 ORTHO05D003571 2.3e-10 70.1 90 63.3
C02p14700 Brassica napus HOM05D003238 ORTHO05D003571 3.0e-10 69.7 195 30.8
BolC2t07595H Brassica oleracea HOM05D003238 ORTHO05D003571 3.0e-10 69.7 195 30.8
Gohir.D07G012200 Gossypium hirsutum HOM05D001717 ORTHO05D007217 3.0e-10 69.7 123 56.1
HanXRQChr02g0031751 Helianthus annuus HOM05D003238 ORTHO05D003571 3.0e-10 69.7 88 46.6
Thhalv10014757m.g Eutrema salsugineum HOM05D003238 ORTHO05D003571 4.0e-10 69.3 191 29.8
Atru.chr7.1621 Acer truncatum HOM05D003238 ORTHO05D003571 5.2e-10 68.9 58 67.2
CiPaw.02G138700 Carya illinoinensis HOM05D003238 ORTHO05D003571 5.2e-10 68.9 77 50.6
Nitab4.5_0000255g0290 Nicotiana tabacum HOM05D003238 ORTHO05D003571 5.2e-10 68.9 74 73.0
Os09g0363700 Oryza sativa ssp. japonica HOM05D003238 ORTHO05D003571 5.2e-10 68.9 165 34.5
BcaB08g36028 Brassica carinata HOM05D003238 ORTHO05D003571 6.8e-10 68.6 81 45.7
Atru.chr1.3787 Acer truncatum HOM05D003238 ORTHO05D003571 1.2e-09 67.8 91 60.4
A03p13050 Brassica napus HOM05D003238 ORTHO05D003571 1.2e-09 67.8 77 49.4
BraA03t10615Z Brassica rapa HOM05D003238 ORTHO05D003571 1.2e-09 67.8 77 49.4
CANSAT56G1439 Cannabis sativa HOM05D003238 ORTHO05D003571 1.2e-09 67.8 88 65.9
Ca_23334_v3 Cicer arietinum L. HOM05D003238 ORTHO05D003571 1.2e-09 67.8 88 61.4
Sp6g18700 Schrenkiella parvula HOM05D003238 ORTHO05D003571 1.2e-09 67.8 49 65.3
TAR624G0020 Trochodendron aralioides HOM05D003238 ORTHO05D003571 1.2e-09 67.8 76 55.3
FAN14G3690 Fragaria x ananassa HOM05D003238 ORTHO05D003571 1.5e-09 67.4 88 51.1
Sc15g0000270 Simmondsia chinensis HOM05D003238 ORTHO05D003571 1.5e-09 67.4 91 57.1
MSTRG.4775 Avicennia marina HOM05D003238 ORTHO05D003571 2.0e-09 67.0 87 46.0
C09p48650 Brassica napus HOM05D003238 ORTHO05D003571 2.0e-09 67.0 197 34.5
Hund20825 Selenicereus undatus HOM05D003238 ORTHO05D003571 2.0e-09 67.0 79 63.3
ATR0789G083 Amborella trichopoda HOM05D003238 ORTHO05D003571 2.6e-09 66.6 87 67.8
ClCG09G000780 Citrullus lanatus HOM05D003238 ORTHO05D003571 2.6e-09 66.6 90 61.1
FvH4_6g33970 Fragaria vesca HOM05D003238 ORTHO05D003571 3.4e-09 66.2 88 51.1
FAN09G2388 Fragaria x ananassa HOM05D003238 ORTHO05D003571 3.4e-09 66.2 88 51.1
Sopen06g022220 Solanum pennellii HOM05D003238 ORTHO05D003571 3.4e-09 66.2 79 67.1
TAR362G1092 Trochodendron aralioides HOM05D003238 ORTHO05D003571 3.4e-09 66.2 49 73.5
Nitab4.5_0009992g0010 Nicotiana tabacum HOM05D003238 ORTHO05D003571 4.4e-09 65.9 57 59.6
Potri.006G148000 Populus trichocarpa HOM05D003238 ORTHO05D003571 4.4e-09 65.9 102 41.2
TPR.G27679 Trifolium pratense HOM05D003238 ORTHO05D003571 4.4e-09 65.9 88 61.4
A02p08810 Brassica napus HOM05D003238 ORTHO05D003571 5.7e-09 65.5 194 30.4
BraA02t05948Z Brassica rapa HOM05D003238 ORTHO05D003571 5.7e-09 65.5 194 30.4
Potri.017G119600 Populus trichocarpa HOM05D003238 ORTHO05D003571 5.7e-09 65.5 89 64.0
HPP92_006473 Vanilla planifolia HOM05D003238 ORTHO05D003571 5.7e-09 65.5 40 75.0
FAN05G5076 Fragaria x ananassa HOM05D003238 ORTHO05D003571 7.5e-09 65.1 88 50.0
HPP92_007657 Vanilla planifolia HOM05D003238 ORTHO05D003571 7.5e-09 65.1 74 66.2
Cpa.g.sc25.72 Carica papaya HOM05D003238 ORTHO05D003571 1.7e-08 63.9 60 63.3
Manes.11G024400 Manihot esculenta HOM05D003238 ORTHO05D003571 1.7e-08 63.9 87 59.8
Nitab4.5_0006462g0010 Nicotiana tabacum HOM05D003238 ORTHO05D003571 1.7e-08 63.9 54 57.4
arahy.Tifrunner.gnm1.ann1.7T9QNI Arachis hypogaea HOM05D003238 ORTHO05D003571 2.2e-08 63.5 84 58.3
Lsat_1_v5_gn_1_35700 Lactuca sativa HOM05D003238 ORTHO05D003571 2.2e-08 63.5 90 47.8
Solyc06g062765.1 Solanum lycopersicum HOM05D003238 ORTHO05D003571 2.2e-08 63.5 79 65.8
GSVIVG01016802001 Vitis vinifera HOM05D003238 ORTHO05D003571 2.9e-08 63.2 96 58.3
BcaB05g22307 Brassica carinata HOM05D003238 ORTHO05D003571 4.9e-08 62.4 193 29.5
CARHR270740 Cardamine hirsuta HOM05D003238 ORTHO05D003571 4.9e-08 62.4 41 65.9
unitig_26.g9174 Utricularia gibba HOM05D003238 ORTHO05D003571 4.9e-08 62.4 177 32.2
Migut.D00960 Erythranthe guttata HOM05D003238 ORTHO05D003571 6.4e-08 62.0 86 40.7
Thhalv10019375m.g Eutrema salsugineum HOM05D003238 ORTHO05D003571 6.4e-08 62.0 95 38.9
RcHm_v2.0_Chr2g0144001 Rosa chinensis HOM05D003238 ORTHO05D003571 6.4e-08 62.0 73 52.1
SalBow6G6091 Salvia bowleyana HOM05D003238 ORTHO05D003571 8.3e-08 61.6 44 65.9
arahy.Tifrunner.gnm1.ann1.HS5001 Arachis hypogaea HOM05D003238 ORTHO05D003571 1.1e-07 61.2 76 63.2
DCAR_026391 Daucus carota HOM05D003238 ORTHO05D003571 1.1e-07 61.2 76 64.5
TAR375G0996 Trochodendron aralioides HOM05D003238 ORTHO05D003571 1.8e-07 60.5 76 51.3
CARHR065610 Cardamine hirsuta HOM05D003238 ORTHO05D003571 4.1e-07 59.3 87 57.5
HPP92_005498 Vanilla planifolia HOM05D003238 ORTHO05D003571 4.1e-07 59.3 47 59.6
RcHm_v2.0_Chr3g0459511 Rosa chinensis HOM05D003238 ORTHO05D003571 5.4e-07 58.9 78 42.3
AT1G72690 Arabidopsis thaliana HOM05D003238 ORTHO05D003571 7.0e-07 58.5 79 63.3
ClCG05G000830 Citrullus lanatus HOM05D003238 ORTHO05D003571 7.0e-07 58.5 219 26.9
vmacro23045 Vaccinium macrocarpon HOM05D003238 ORTHO05D003571 9.2e-07 58.2 56 55.4
ECA247G2422 Erigeron canadensis HOM05D003238 ORTHO05D003571 1.2e-06 57.8 82 63.4
MD09G1190500 Malus domestica HOM05D003238 ORTHO05D003571 1.6e-06 57.4 66 51.5
Sed0023757 Sechium edule HOM05D003238 ORTHO05D003571 2.0e-06 57.0 211 28.0
HanXRQChr06g0178591 Helianthus annuus HOM05D003238 ORTHO05D003571 2.7e-06 56.6 134 32.8
Sabra06G0117100 Salix brachista HOM05D003238 ORTHO05D003571 4.6e-06 55.8 187 28.9
PGSC0003DMG400004852 Solanum tuberosum HOM05D003238 ORTHO05D003571 4.6e-06 55.8 71 69.0
EL10Ac7g16367 Beta vulgaris HOM05D003238 ORTHO05D003571 7.8e-06 55.1 46 63.0
AUR62009849 Chenopodium quinoa HOM05D003238 ORTHO05D003571 7.8e-06 55.1 94 38.3


User provided reference genes

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