Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.7G199300 Prunus persica HOM05D008087 ORTHO05D010187 4.7e-104 381.3 212 100.0
MD15G1217200 Malus domestica HOM05D008087 ORTHO05D010187 7.3e-97 357.5 212 92.0
RcHm_v2.0_Chr2g0094891 Rosa chinensis HOM05D008087 ORTHO05D010187 1.8e-87 326.2 212 87.7
QL11p000704 Quercus lobata HOM05D008087 ORTHO05D010187 1.9e-81 306.2 211 80.6
Cfa002992 Carpinus fangiana HOM05D008087 ORTHO05D010187 5.6e-81 304.7 212 80.7
Ciclev10009482m.g Citrus clementina HOM05D008087 ORTHO05D010187 4.8e-80 301.6 212 78.3
TWI34G0776 Tripterygium wilfordii HOM05D008087 ORTHO05D010187 1.4e-79 300.1 212 76.9
Thecc.09G077500 Theobroma cacao HOM05D008087 ORTHO05D010187 4.0e-79 298.5 209 78.5
Sabra18G0058300 Salix brachista HOM05D008087 ORTHO05D010187 4.9e-77 291.6 214 78.0
COL.COLO4_18101 Corchorus olitorius HOM05D008087 ORTHO05D010187 8.4e-77 290.8 209 75.6
Glyma.13G110250 Glycine max HOM05D008087 ORTHO05D010187 1.1e-76 290.4 210 74.3
CSS0002060 Camellia sinensis var. sinensis HOM05D008087 ORTHO05D010187 2.4e-76 289.3 212 75.5
Gorai.010G088200 Gossypium raimondii HOM05D008087 ORTHO05D010187 4.2e-76 288.5 212 74.5
GSVIVG01015086001 Vitis vinifera HOM05D004023 ORTHO05D004681 7.1e-76 287.7 197 79.7
Gohir.A06G076300 Gossypium hirsutum HOM05D008087 ORTHO05D010187 2.1e-75 286.2 207 73.9
Cpa.g.sc28.44 Carica papaya HOM05D008087 ORTHO05D010187 2.7e-75 285.8 214 74.8
Nitab4.5_0002966g0020 Nicotiana tabacum HOM05D008087 ORTHO05D010187 4.6e-75 285.0 211 74.4
Phvul.003G131000 Phaseolus vulgaris HOM05D008087 ORTHO05D010187 4.6e-75 285.0 210 74.3
CSS0037579 Camellia sinensis var. sinensis HOM05D008087 ORTHO05D010187 6.0e-75 284.6 212 74.5
DCAR_024749 Daucus carota HOM05D008087 ORTHO05D010187 6.0e-75 284.6 212 72.6
Potri.018G065700 Populus trichocarpa HOM05D008087 ORTHO05D010187 6.0e-75 284.6 214 75.7
CiPaw.03G206800 Carya illinoinensis HOM05D008087 ORTHO05D010187 7.9e-75 284.3 213 77.5
Gohir.D06G075300 Gossypium hirsutum HOM05D008087 ORTHO05D010187 7.9e-75 284.3 212 74.1
Manes.16G095600 Manihot esculenta HOM05D008087 ORTHO05D010187 7.9e-75 284.3 212 73.6
Hma1.2p1_0179F.1_g079550 Hydrangea macrophylla HOM05D008087 ORTHO05D010187 1.0e-74 283.9 206 75.7
Duzib168G2281 Durio zibethinus HOM05D008087 ORTHO05D010187 2.3e-74 282.7 209 74.2
Glyma.17G049450 Glycine max HOM05D008087 ORTHO05D010187 2.3e-74 282.7 210 72.9
MSTRG.19463 Avicennia marina HOM05D008087 ORTHO05D010187 5.1e-74 281.6 205 77.1
VMungo1215G2436 Vigna mungo HOM05D008087 ORTHO05D010187 5.6e-73 278.1 210 72.9
Lj4P912T21 Lonicera japonica HOM05D008087 ORTHO05D010187 1.6e-72 276.6 210 72.4
CANSAT56G3514 Cannabis sativa HOM05D008087 ORTHO05D010187 2.1e-72 276.2 213 73.2
Lj4g0020355 Lotus japonicus HOM05D008087 ORTHO05D010187 3.7e-72 275.4 210 71.9
TAR383G0588 Trochodendron aralioides HOM05D008087 ORTHO05D010187 3.7e-72 275.4 207 72.0
Eucgr.C03187 Eucalyptus grandis HOM05D008087 ORTHO05D010187 4.8e-72 275.0 212 72.2
Cc06_g12130 Coffea canephora HOM05D008087 ORTHO05D010187 2.9e-69 265.8 212 69.8
Oeu049121.1 Olea europaea HOM05D008087 ORTHO05D010187 6.5e-69 264.6 207 69.6
SalBow6G2426 Salvia bowleyana HOM05D008087 ORTHO05D010187 1.9e-68 263.1 202 72.3
Lalb_Chr07g0181171 Lupinus albus HOM05D008087 ORTHO05D010187 3.2e-68 262.3 210 69.0
arahy.Tifrunner.gnm1.ann1.TB6UZQ Arachis hypogaea HOM05D008087 ORTHO05D010187 4.2e-68 261.9 210 67.6
PGSC0003DMG400013001 Solanum tuberosum HOM05D008087 ORTHO05D010187 4.2e-68 261.9 209 67.9
Solyc07g041770.1 Solanum lycopersicum HOM05D008087 ORTHO05D010187 9.3e-68 260.8 209 67.0
Atru.chr7.1701 Acer truncatum HOM05D002335 ORTHO05D006692 1.2e-67 260.4 183 76.5
Sopen07g021260 Solanum pennellii HOM05D008087 ORTHO05D010187 1.3e-66 256.9 209 66.5
Rhsim05G0007800 Rhododendron simsii HOM05D008087 ORTHO05D010187 2.3e-66 256.1 212 68.4
Psat4g017680 Pisum sativum HOM05D008087 ORTHO05D010187 1.9e-65 253.1 212 68.9
TPR.G12579 Trifolium pratense HOM05D008087 ORTHO05D010187 5.7e-65 251.5 206 67.5
Nn8g38653 Nelumbo nucifera HOM05D008087 ORTHO05D010187 1.6e-64 250.0 212 67.5
PSO135G0253 Papaver somniferum HOM05D008087 ORTHO05D010187 3.1e-63 245.7 212 63.7
AUR62028937 Chenopodium quinoa HOM05D008087 ORTHO05D010187 6.9e-63 244.6 214 63.1
Migut.J00928 Erythranthe guttata HOM05D008087 ORTHO05D010187 1.2e-62 243.8 201 71.1
Duzib187G0811 Durio zibethinus HOM05D008087 ORTHO05D010187 1.1e-60 237.3 166 74.1
Medtr4g125370 Medicago truncatula HOM05D008087 ORTHO05D010187 2.5e-60 236.1 207 67.1
MBI19_g11825_MAGBIO Magnolia biondii HOM05D008087 ORTHO05D010187 1.6e-59 233.4 212 60.4
Aqoxy1G01322 Aquilegia oxysepala HOM05D008087 ORTHO05D010187 6.7e-58 228.0 207 62.8
Eucgr.L02787 Eucalyptus grandis HOM05D008087 ORTHO05D010187 1.9e-57 226.5 212 63.7
CSS0034066 Camellia sinensis var. sinensis HOM05D008087 ORTHO05D010187 3.3e-57 225.7 170 71.8
PGR044G2582 Punica granatum HOM05D008087 ORTHO05D010187 1.1e-55 220.7 212 61.8
Ca_21320_v3 Cicer arietinum L. HOM05D008087 ORTHO05D010187 1.4e-50 203.8 206 60.2
Sc08g0008880 Simmondsia chinensis HOM05D008087 ORTHO05D010187 3.9e-50 202.2 183 62.3
Ah.09g231600 Amaranthus hybridus HOM05D008087 ORTHO05D010187 1.2e-46 190.7 187 57.2
Lsat_1_v5_gn_7_35101 Lactuca sativa HOM05D004023 ORTHO05D004681 7.2e-44 181.4 202 55.9
AL5G20930 Arabidopsis lyrata HOM05D008087 ORTHO05D010187 6.7e-42 174.9 205 50.7
AT3G42725 Arabidopsis thaliana HOM05D008087 ORTHO05D010187 4.1e-39 165.6 204 47.5
THA.LOC104811009 Tarenaya hassleriana HOM05D008087 ORTHO05D010187 1.7e-37 160.2 213 48.4
Nitab4.5_0000343g0200 Nicotiana tabacum HOM05D008087 ORTHO05D010187 9.4e-36 154.5 107 77.6
Peaxi162Scf00127g00202 Petunia axillaris HOM05D008087 ORTHO05D010187 1.2e-35 154.1 107 76.6
PGR044G2297 Punica granatum HOM05D008087 ORTHO05D010187 1.5e-25 120.6 127 55.1
PSO724G0984 Papaver somniferum HOM05D008087 ORTHO05D010187 7.5e-25 118.2 107 61.7
MD15G1091800 Malus domestica HOM05D008087 ORTHO05D010187 1.7e-24 117.1 84 73.8
Zm00001eb005810 Zea mays HOM05D008087 ORTHO05D010187 1.4e-23 114.0 211 38.9
Dinv42391 Davidia involucrata HOM05D002335 ORTHO05D006692 1.6e-22 110.5 94 67.0
Ah.14g084950 Amaranthus hybridus HOM05D008087 ORTHO05D010187 1.6e-19 100.5 113 57.5
HPP92_026302 Vanilla planifolia HOM05D008087 ORTHO05D010187 5.7e-17 92.0 202 34.7
ATR0598G047 Amborella trichopoda HOM05D008087 ORTHO05D010187 9.8e-17 91.3 117 41.0
SMO358G0701 Selaginella moellendorffii HOM05D016812 ORTHO05D010187 2.8e-16 89.7 191 33.5
Ciclev10030215m.g Citrus clementina HOM05D008087 ORTHO05D010187 1.9e-12 77.0 165 40.0
ECA240G4665 Erigeron canadensis HOM05D002335 ORTHO05D006692 1.6e-11 73.9 54 68.5
Mapoly0038s0092 Marchantia polymorpha HOM05D016812 ORTHO05D010187 3.0e-10 69.7 193 30.1
Pp3c10_8870 Physcomitrium patens HOM05D016812 ORTHO05D024947 2.9e-08 63.2 190 28.4
SEGI_14451 Sequoiadendron giganteum HOM05D003033 ORTHO05D003475 2.7e-06 56.6 192 28.1
CBR_g8990 Chara braunii HOM05D016812 ORTHO05D024947 7.8e-06 55.1 173 27.2


User provided reference genes

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