Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.7G198800 Prunus persica HOM05D006378 ORTHO05D007959 0.0e+00 1758.0 860 100.0
MD15G1217600 Malus domestica HOM05D006378 ORTHO05D007959 0.0e+00 1570.4 862 88.5
RcHm_v2.0_Chr2g0094931 Rosa chinensis HOM05D006378 ORTHO05D007959 0.0e+00 1504.2 858 84.7
FAN26G1418 Fragaria x ananassa HOM05D006378 ORTHO05D007959 0.0e+00 1496.5 859 83.6
FAN26G3001 Fragaria x ananassa HOM05D006378 ORTHO05D007959 0.0e+00 1490.3 859 83.2
FAN19G1878 Fragaria x ananassa HOM05D006378 ORTHO05D007959 0.0e+00 1464.1 881 80.5
Cfa002988 Carpinus fangiana HOM05D006378 ORTHO05D007959 0.0e+00 1368.2 863 77.2
Manes.03G040400 Manihot esculenta HOM05D006378 ORTHO05D007959 0.0e+00 1359.0 865 75.3
QL11p000773 Quercus lobata HOM05D006378 ORTHO05D007959 0.0e+00 1354.7 868 76.2
CANSAT56G1041 Cannabis sativa HOM05D006378 ORTHO05D007959 0.0e+00 1341.3 863 76.2
Thecc.09G076800 Theobroma cacao HOM05D006378 ORTHO05D007959 0.0e+00 1335.1 862 75.4
Potri.006G141900 Populus trichocarpa HOM05D006378 ORTHO05D007959 0.0e+00 1333.9 869 74.2
Sabra06G0111000 Salix brachista HOM05D006378 ORTHO05D007959 0.0e+00 1330.5 869 74.1
Duzib168G0703 Durio zibethinus HOM05D006378 ORTHO05D007959 0.0e+00 1317.8 862 74.8
Ciclev10007418m.g Citrus clementina HOM05D006378 ORTHO05D007959 0.0e+00 1315.1 867 73.8
TAR383G0342 Trochodendron aralioides HOM05D006378 ORTHO05D007959 0.0e+00 1312.7 867 73.5
MELO3C015521.2 Cucumis melo HOM05D006378 ORTHO05D007959 0.0e+00 1312.0 868 73.6
Glyma.15G177600 Glycine max HOM05D006378 ORTHO05D007959 0.0e+00 1312.0 862 73.5
TPR.G28586 Trifolium pratense HOM05D006378 ORTHO05D007959 0.0e+00 1311.2 868 73.2
Gohir.D06G075500 Gossypium hirsutum HOM05D006378 ORTHO05D007959 0.0e+00 1309.7 863 74.3
Gorai.010G088400 Gossypium raimondii HOM05D006378 ORTHO05D007959 0.0e+00 1308.5 863 74.3
GSVIVG01015082001 Vitis vinifera HOM05D006378 ORTHO05D007959 0.0e+00 1308.1 863 73.6
Gohir.A06G076500 Gossypium hirsutum HOM05D006378 ORTHO05D007959 0.0e+00 1307.7 863 74.3
ClCG03G015080 Citrullus lanatus HOM05D006378 ORTHO05D007959 0.0e+00 1307.0 877 72.4
CsaV3_1G041050 Cucumis sativus L. HOM05D006378 ORTHO05D007959 0.0e+00 1305.0 872 73.2
VMungo1309G1044 Vigna mungo HOM05D006378 ORTHO05D007959 0.0e+00 1305.0 862 74.0
Sed0026053 Sechium edule HOM05D006378 ORTHO05D007959 0.0e+00 1302.7 870 73.0
Cpa.g.sc28.38 Carica papaya HOM05D006378 ORTHO05D007959 0.0e+00 1302.0 864 73.4
Haze_26013 Corylus avellana HOM05D006378 ORTHO05D007959 0.0e+00 1298.9 864 74.1
Rhsim03G0227500 Rhododendron simsii HOM05D006378 ORTHO05D007959 0.0e+00 1298.1 866 71.6
Cc06_g12180 Coffea canephora HOM05D006378 ORTHO05D007959 0.0e+00 1297.3 865 71.4
Lj6g0025012 Lotus japonicus HOM05D006378 ORTHO05D007959 0.0e+00 1297.0 862 72.9
TWI34G0472 Tripterygium wilfordii HOM05D006378 ORTHO05D007959 0.0e+00 1296.2 863 72.4
Medtr2g041640 Medicago truncatula HOM05D006378 ORTHO05D007959 0.0e+00 1295.8 864 72.8
Phvul.009G227300 Phaseolus vulgaris HOM05D006378 ORTHO05D007959 0.0e+00 1289.2 862 73.4
Lj7C687T7 Lonicera japonica HOM05D006378 ORTHO05D007959 0.0e+00 1286.9 870 71.6
vmacro06342 Vaccinium macrocarpon HOM05D006378 ORTHO05D007959 0.0e+00 1286.9 866 71.2
Lalb_Chr08g0232591 Lupinus albus HOM05D006378 ORTHO05D007959 0.0e+00 1286.6 864 72.1
Ca_02206_v3 Cicer arietinum L. HOM05D006378 ORTHO05D007959 0.0e+00 1280.8 859 72.4
Nitab4.5_0009436g0010 Nicotiana tabacum HOM05D006378 ORTHO05D007959 0.0e+00 1278.8 863 71.0
Psat1g134280 Pisum sativum HOM05D006378 ORTHO05D007959 0.0e+00 1278.8 858 72.1
Sc08g0008890 Simmondsia chinensis HOM05D006378 ORTHO05D007959 0.0e+00 1277.3 864 70.7
PGR044G1219 Punica granatum HOM05D006378 ORTHO05D007959 0.0e+00 1276.9 870 70.3
Eucgr.C03329 Eucalyptus grandis HOM05D006378 ORTHO05D007959 0.0e+00 1276.2 865 71.8
arahy.Tifrunner.gnm1.ann1.LZ43MP Arachis hypogaea HOM05D006378 ORTHO05D007959 0.0e+00 1274.6 861 72.4
Nitab4.5_0000343g0150 Nicotiana tabacum HOM05D006378 ORTHO05D007959 0.0e+00 1272.7 862 70.6
arahy.Tifrunner.gnm1.ann1.CBKZ0V Arachis hypogaea HOM05D006378 ORTHO05D007959 0.0e+00 1271.5 858 72.3
Dinv42394 Davidia involucrata HOM05D006378 ORTHO05D007959 0.0e+00 1271.5 867 72.4
Eucgr.C03264 Eucalyptus grandis HOM05D006378 ORTHO05D007959 0.0e+00 1270.4 866 71.2
Hma1.2p1_0179F.1_g079520 Hydrangea macrophylla HOM05D006378 ORTHO05D007959 0.0e+00 1266.1 874 70.7
Migut.J00925 Erythranthe guttata HOM05D006378 ORTHO05D007959 0.0e+00 1263.4 861 71.1
CSS0003361 Camellia sinensis var. sinensis HOM05D006378 ORTHO05D007959 0.0e+00 1263.1 858 71.0
CSS0014220 Camellia sinensis var. sinensis HOM05D006378 ORTHO05D007959 0.0e+00 1261.5 858 71.0
PGSC0003DMG400019029 Solanum tuberosum HOM05D006378 ORTHO05D007959 0.0e+00 1261.1 863 70.3
Sopen07g021350 Solanum pennellii HOM05D006378 ORTHO05D007959 0.0e+00 1258.8 863 70.0
MSTRG.19459 Avicennia marina HOM05D006378 ORTHO05D007959 0.0e+00 1258.4 860 70.8
Oeu035912.1 Olea europaea HOM05D006378 ORTHO05D007959 0.0e+00 1257.7 859 69.6
Solyc07g041870.3 Solanum lycopersicum HOM05D006378 ORTHO05D007959 0.0e+00 1254.6 863 69.8
SalBow6G1560 Salvia bowleyana HOM05D006378 ORTHO05D007959 0.0e+00 1254.2 864 70.4
Nn8g38637 Nelumbo nucifera HOM05D006378 ORTHO05D007959 0.0e+00 1251.1 865 70.4
THA.LOC104826591 Tarenaya hassleriana HOM05D006378 ORTHO05D007959 0.0e+00 1249.6 864 70.1
Hund08780 Selenicereus undatus HOM05D006378 ORTHO05D007959 0.0e+00 1248.4 866 70.0
MBI19_g16222_MAGBIO Magnolia biondii HOM05D006378 ORTHO05D007959 0.0e+00 1246.1 869 69.5
Aqoxy7G04130 Aquilegia oxysepala HOM05D006378 ORTHO05D007959 0.0e+00 1245.3 870 69.1
HanXRQChr06g0178331 Helianthus annuus HOM05D006378 ORTHO05D007959 0.0e+00 1243.8 865 69.7
SGA_v2.0_scaffold91G28112 Striga asiatica HOM05D006378 ORTHO05D007959 0.0e+00 1243.8 860 69.1
PSO135G0915 Papaver somniferum HOM05D006378 ORTHO05D007959 0.0e+00 1236.5 872 67.9
DCAR_011949 Daucus carota HOM05D006378 ORTHO05D007959 0.0e+00 1230.7 872 67.9
AUR62025249 Chenopodium quinoa HOM05D006378 ORTHO05D007959 0.0e+00 1228.8 885 67.2
Thhalv10003638m.g Eutrema salsugineum HOM05D006378 ORTHO05D007959 0.0e+00 1225.3 867 68.1
Sp7g06720 Schrenkiella parvula HOM05D006378 ORTHO05D007959 0.0e+00 1224.5 863 68.3
AUR62028935 Chenopodium quinoa HOM05D006378 ORTHO05D007959 0.0e+00 1223.8 877 67.2
EL10Ac8g19061 Beta vulgaris HOM05D006378 ORTHO05D007959 0.0e+00 1220.7 866 68.5
BolC4t25998H Brassica oleracea HOM05D006378 ORTHO05D007959 0.0e+00 1220.3 863 68.7
BcaC02g09569 Brassica carinata HOM05D006378 ORTHO05D007959 0.0e+00 1219.1 863 68.6
C04p44250 Brassica napus HOM05D006378 ORTHO05D007959 0.0e+00 1219.1 863 68.5
BcaB06g26949 Brassica carinata HOM05D006378 ORTHO05D007959 0.0e+00 1218.8 865 68.7
Peaxi162Scf00127g01816 Petunia axillaris HOM05D006378 ORTHO05D007959 0.0e+00 1216.4 861 68.8
A04p10600 Brassica napus HOM05D006378 ORTHO05D007959 0.0e+00 1215.7 864 68.5
ECA236G3597 Erigeron canadensis HOM05D006378 ORTHO05D007959 0.0e+00 1215.7 864 67.7
BraA04t16723Z Brassica rapa HOM05D006378 ORTHO05D007959 0.0e+00 1215.3 864 68.5
FvH4_1g08650 Fragaria vesca HOM05D006378 ORTHO05D007959 0.0e+00 1215.3 694 82.7
Ah.09g231620 Amaranthus hybridus HOM05D006378 ORTHO05D007959 0.0e+00 1214.9 866 67.8
Lsat_1_v5_gn_8_86460 Lactuca sativa HOM05D006378 ORTHO05D007959 0.0e+00 1207.2 863 68.0
Aa31LG2G20840 Aethionema arabicum HOM05D006378 ORTHO05D007959 0.0e+00 1206.8 861 67.8
Carub.0002s2445 Capsella rubella HOM05D006378 ORTHO05D007959 0.0e+00 1202.2 865 67.3
AL2G37770 Arabidopsis lyrata HOM05D006378 ORTHO05D007959 0.0e+00 1199.1 865 66.8
AT1G77550 Arabidopsis thaliana HOM05D006378 ORTHO05D007959 0.0e+00 1191.8 864 66.7
CAN.G62.5 Capsicum annuum HOM05D006378 ORTHO05D007959 0.0e+00 1186.4 823 70.1
CiPaw.03G206400 Carya illinoinensis HOM05D006378 ORTHO05D007959 0.0e+00 1157.1 753 76.5
Os03g0179000 Oryza sativa ssp. japonica HOM05D006378 ORTHO05D007959 0.0e+00 1124.4 866 63.6
HPP92_002164 Vanilla planifolia HOM05D006378 ORTHO05D007959 0.0e+00 1104.7 852 64.3
ATR0598G254 Amborella trichopoda HOM05D006378 ORTHO05D007959 0.0e+00 1080.1 860 60.8
COL.COLO4_18097 Corchorus olitorius HOM05D006378 ORTHO05D007959 1.2e-307 1059.7 861 63.9
Atru.chr7.1707 Acer truncatum HOM05D006378 ORTHO05D007959 2.1e-304 1048.9 647 76.4
unitig_578.g15677 Utricularia gibba HOM05D006378 ORTHO05D007959 9.0e-303 1043.5 861 60.6
CARHR071080 Cardamine hirsuta HOM05D006378 ORTHO05D007959 4.9e-293 1011.1 691 69.8
AagrBONN_evm.TU.Sc2ySwM_117.2900 Anthoceros agrestis HOM05D006378 ORTHO05D007959 3.9e-290 1001.5 863 57.6
Mapoly0113s0055 Marchantia polymorpha HOM05D006378 ORTHO05D007959 9.0e-287 990.3 860 54.8
SMO174G0008 Selaginella moellendorffii HOM05D006378 ORTHO05D007959 2.3e-282 975.7 863 56.4
Pp3c6_19960 Physcomitrium patens HOM05D006378 ORTHO05D007959 1.7e-277 959.5 863 53.8
CBR_g12041 Chara braunii HOM05D006378 ORTHO05D007959 6.2e-203 711.8 760 47.8
Actinidia38480 Actinidia chinensis HOM05D006378 ORTHO05D007959 4.3e-164 582.8 388 72.9
FAN28G1488 Fragaria x ananassa HOM05D006378 ORTHO05D007959 3.4e-161 573.2 355 80.0
Zm00001eb401890 Zea mays HOM05D006378 ORTHO05D007959 7.7e-153 545.4 473 58.8
SEGI_03485 Sequoiadendron giganteum HOM05D006378 ORTHO05D007959 6.7e-141 505.8 459 55.6
CAN.G81.12 Capsicum annuum HOM05D006378 ORTHO05D007959 6.2e-94 349.7 306 59.8
CAN.G81.10 Capsicum annuum HOM05D006378 ORTHO05D007959 1.6e-70 271.9 204 63.7
SEGI_37917 Sequoiadendron giganteum HOM05D006378 ORTHO05D007959 2.2e-67 261.5 168 73.8
Psat7g020000 Pisum sativum HOM05D006378 ORTHO05D007959 1.3e-54 219.2 175 66.3
CDE05G1577 Ceratophyllum demersum HOM05D006378 ORTHO05D007959 2.6e-44 184.9 172 54.1
CAN.G81.11 Capsicum annuum HOM05D006378 ORTHO05D007959 1.1e-42 179.5 197 51.8
CDE05G1890 Ceratophyllum demersum HOM05D006378 ORTHO05D007959 1.7e-38 165.6 216 41.7
Actinidia29933 Actinidia chinensis HOM05D006378 ORTHO05D007959 3.1e-29 134.8 85 76.5
SHI02337 Sapria himalayana HOM05D006378 ORTHO05D007959 5.3e-29 134.0 150 45.3
RcHm_v2.0_Chr2g0095081 Rosa chinensis HOM05D006378 ORTHO05D007959 6.5e-27 127.1 87 73.6
Actinidia29932 Actinidia chinensis HOM05D006378 ORTHO05D007959 4.7e-25 120.9 118 55.1
SHI02335 Sapria himalayana HOM05D006378 ORTHO05D007959 4.0e-24 117.9 90 65.6
RcHm_v2.0_Chr2g0095101 Rosa chinensis HOM05D006378 ORTHO05D007959 5.2e-24 117.5 73 76.7
RcHm_v2.0_Chr2g0095091 Rosa chinensis HOM05D006378 ORTHO05D007959 1.2e-23 116.3 69 79.7
SHI02336 Sapria himalayana HOM05D006378 ORTHO05D007959 1.9e-18 99.0 106 50.9
Cre06.g300250 Chlamydomonas reinhardtii HOM05D008676 ORTHO05D010936 8.3e-14 83.6 200 26.0
MCO11G220 Micromonas commoda HOM05D008676 ORTHO05D010936 4.5e-12 77.8 288 22.9
Mapoly0012s0012 Marchantia polymorpha HOM05D008676 ORTHO05D010936 1.3e-11 76.3 330 23.9
CBR_g54068 Chara braunii HOM05D008676 ORTHO05D010936 6.6e-11 73.9 240 25.4
MCO11G738 Micromonas commoda HOM05D008676 ORTHO05D010936 8.6e-11 73.6 303 26.1
AagrBONN_evm.TU.Sc2ySwM_228.857 Anthoceros agrestis HOM05D008676 ORTHO05D010936 1.5e-10 72.8 324 22.8
MCO03G450 Micromonas commoda HOM05D008676 ORTHO05D010936 1.9e-10 72.4 361 22.2
Cre02.g146650 Chlamydomonas reinhardtii HOM05D008676 ORTHO05D010936 2.5e-10 72.0 304 26.3
Cre17.g699500 Chlamydomonas reinhardtii HOM05D008676 ORTHO05D010936 3.3e-10 71.6 320 23.4
PRCOL_00007033 Prasinoderma coloniale HOM05D008676 ORTHO05D010936 3.3e-10 71.6 305 25.9
SMO337G0080 Selaginella moellendorffii HOM05D008676 ORTHO05D010936 1.2e-09 69.7 281 24.9
Actinidia29934 Actinidia chinensis HOM05D006378 ORTHO05D007959 1.8e-08 65.9 34 82.4
Cre03.g145447 Chlamydomonas reinhardtii HOM05D008676 ORTHO05D010936 1.8e-08 65.9 203 24.1
SHI02338 Sapria himalayana HOM05D006378 ORTHO05D007959 1.8e-08 65.9 65 52.3
PRCOL_00004385 Prasinoderma coloniale HOM05D008676 ORTHO05D010936 2.3e-08 65.5 230 25.7
SMO117G0188 Selaginella moellendorffii HOM05D008676 ORTHO05D010936 5.2e-08 64.3 316 22.8
CBR_g51027 Chara braunii HOM05D008676 ORTHO05D010936 2.6e-07 62.0 230 29.1
ATR0511G001 Amborella trichopoda HOM05D006378 ORTHO05D007959 5.7e-07 60.8 85 45.9
Cre02.g117350 Chlamydomonas reinhardtii HOM05D008676 ORTHO05D010936 7.5e-07 60.5 207 22.2
SMO348G0088 Selaginella moellendorffii HOM05D008676 ORTHO05D010936 9.8e-07 60.1 298 23.5
SHI02339 Sapria himalayana HOM05D006378 ORTHO05D007959 2.2e-06 58.9 94 37.2
Pp3c1_16240 Physcomitrium patens HOM05D008676 ORTHO05D010936 4.9e-06 57.8 215 23.7
AagrBONN_evm.TU.Sc2ySwM_369.291 Anthoceros agrestis HOM05D008676 ORTHO05D010936 6.3e-06 57.4 172 26.7
CBR_g37950 Chara braunii HOM05D000019 ORTHO05D000002 8.3e-06 57.0 109 32.1


User provided reference genes

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