Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.7G193100 Prunus persica HOM05D007531 ORTHO05D009484 3.0e-48 194.9 102 100.0
MD15G1222700 Malus domestica HOM05D007531 ORTHO05D009484 4.8e-38 161.0 102 82.4
CANSAT56G3767 Cannabis sativa HOM05D007531 ORTHO05D009484 1.1e-26 123.2 102 62.7
Dinv42427 Davidia involucrata HOM05D007531 ORTHO05D009484 7.2e-26 120.6 102 65.7
Thecc.09G071300 Theobroma cacao HOM05D007531 ORTHO05D009484 1.4e-24 116.3 102 61.8
Manes.03G043400 Manihot esculenta HOM05D007531 ORTHO05D009484 8.9e-24 113.6 102 62.7
CSS0023587 Camellia sinensis var. sinensis HOM05D007531 ORTHO05D009484 4.4e-23 111.3 102 62.7
PGR042G0735 Punica granatum HOM05D007531 ORTHO05D009484 1.3e-22 109.8 102 62.7
Duzib168G1872 Durio zibethinus HOM05D007531 ORTHO05D009484 1.7e-22 109.4 106 59.4
COL.COLO4_21218 Corchorus olitorius HOM05D007531 ORTHO05D009484 2.8e-22 108.6 107 58.9
Duzib150G1567 Durio zibethinus HOM05D007531 ORTHO05D009484 2.8e-22 108.6 107 58.9
RcHm_v2.0_Chr2g0095821 Rosa chinensis HOM05D007531 ORTHO05D009484 3.7e-22 108.2 106 56.6
Manes.16G092000 Manihot esculenta HOM05D007531 ORTHO05D009484 1.1e-21 106.7 102 59.8
Gorai.004G285500 Gossypium raimondii HOM05D007531 ORTHO05D009484 1.8e-21 105.9 103 58.3
Cpa.g.sc82.75 Carica papaya HOM05D007531 ORTHO05D009484 2.4e-21 105.5 103 57.3
TWI63G1700 Tripterygium wilfordii HOM05D007531 ORTHO05D009484 2.4e-21 105.5 102 52.9
FAN26G1659 Fragaria x ananassa HOM05D007531 ORTHO05D009484 9.2e-21 103.6 106 52.8
FAN26G1806 Fragaria x ananassa HOM05D007531 ORTHO05D009484 9.2e-21 103.6 106 52.8
Gohir.D08G267900 Gossypium hirsutum HOM05D007531 ORTHO05D009484 1.6e-20 102.8 103 57.3
Potri.006G137401 Populus trichocarpa HOM05D007531 ORTHO05D009484 1.6e-20 102.8 102 54.9
Sp1g17150 Schrenkiella parvula HOM05D007531 ORTHO05D009484 2.0e-20 102.4 102 56.9
Nitab4.5_0001699g0060 Nicotiana tabacum HOM05D007531 ORTHO05D009484 2.7e-20 102.1 101 55.4
FAN23G0531 Fragaria x ananassa HOM05D007531 ORTHO05D009484 5.9e-20 100.9 107 50.5
ClCG11G000070 Citrullus lanatus HOM05D007531 ORTHO05D009484 1.0e-19 100.1 83 63.9
Atru.chr7.1757 Acer truncatum HOM05D007531 ORTHO05D009484 1.3e-19 99.8 102 56.9
Actinidia39623 Actinidia chinensis HOM05D007531 ORTHO05D009484 1.3e-19 99.8 102 54.9
FvH4_1g09260 Fragaria vesca HOM05D007531 ORTHO05D009484 1.3e-19 99.8 107 52.3
FAN19G1112 Fragaria x ananassa HOM05D007531 ORTHO05D009484 1.3e-19 99.8 107 52.3
Gohir.A08G246700 Gossypium hirsutum HOM05D007531 ORTHO05D009484 1.3e-19 99.8 103 56.3
QL11p002692 Quercus lobata HOM05D007531 ORTHO05D009484 1.7e-19 99.4 101 55.4
Nitab4.5_0007540g0040 Nicotiana tabacum HOM05D007531 ORTHO05D009484 3.8e-19 98.2 101 54.5
Sopen07g022090 Solanum pennellii HOM05D007531 ORTHO05D009484 3.8e-19 98.2 101 56.4
Cfa002948 Carpinus fangiana HOM05D007531 ORTHO05D009484 8.6e-19 97.1 107 57.9
Nitab4.5_0001092g0060 Nicotiana tabacum HOM05D007531 ORTHO05D009484 8.6e-19 97.1 103 53.4
Solyc07g042450.3 Solanum lycopersicum HOM05D007531 ORTHO05D009484 1.1e-18 96.7 101 55.4
PGSC0003DMG400013576 Solanum tuberosum HOM05D007531 ORTHO05D009484 1.1e-18 96.7 100 52.0
Rhsim05G0002900 Rhododendron simsii HOM05D007531 ORTHO05D009484 1.5e-18 96.3 102 52.0
Aa31LG7G3950 Aethionema arabicum HOM05D007531 ORTHO05D009484 1.9e-18 95.9 102 52.0
GSVIVG01015026001 Vitis vinifera HOM05D007531 ORTHO05D009484 1.9e-18 95.9 102 53.9
Ciclev10010006m.g Citrus clementina HOM05D007531 ORTHO05D009484 3.3e-18 95.1 108 51.9
Oeu028116.1 Olea europaea HOM05D007531 ORTHO05D009484 7.3e-18 94.0 106 49.1
THA.LOC104809045 Tarenaya hassleriana HOM05D007531 ORTHO05D009484 7.3e-18 94.0 102 53.9
CsaV3_5G027570 Cucumis sativus L. HOM05D007531 ORTHO05D009484 1.6e-17 92.8 81 61.7
Migut.L01591 Erythranthe guttata HOM05D007531 ORTHO05D009484 1.6e-17 92.8 110 50.0
MSTRG.19432 Avicennia marina HOM05D007531 ORTHO05D009484 2.8e-17 92.0 106 50.0
AL1G31820 Arabidopsis lyrata HOM05D007531 ORTHO05D009484 3.6e-17 91.7 105 54.3
Eucgr.H05011 Eucalyptus grandis HOM05D007531 ORTHO05D009484 3.6e-17 91.7 106 50.0
DCAR_010491 Daucus carota HOM05D007531 ORTHO05D009484 6.1e-17 90.9 59 72.9
SalBow6G4078 Salvia bowleyana HOM05D007531 ORTHO05D009484 8.0e-17 90.5 110 48.2
SGA_v2.0_scaffold296G47570 Striga asiatica HOM05D007531 ORTHO05D009484 8.0e-17 90.5 98 53.1
BcaB07g31940 Brassica carinata HOM05D007531 ORTHO05D009484 1.0e-16 90.1 103 52.4
BcaC07g38992 Brassica carinata HOM05D007531 ORTHO05D009484 1.0e-16 90.1 103 52.4
CAN.G660.22 Capsicum annuum HOM05D007531 ORTHO05D009484 1.0e-16 90.1 100 51.0
Hma1.2p1_0519F.1_g171380 Hydrangea macrophylla HOM05D007531 ORTHO05D009484 1.4e-16 89.7 102 50.0
Lsat_1_v5_gn_7_35440 Lactuca sativa HOM05D007531 ORTHO05D009484 1.8e-16 89.4 104 51.9
Dinv25515 Davidia involucrata HOM05D007531 ORTHO05D009484 2.3e-16 89.0 97 53.6
TAR626G0337 Trochodendron aralioides HOM05D007531 ORTHO05D009484 2.3e-16 89.0 102 50.0
Carub.0001s1884 Capsella rubella HOM05D007531 ORTHO05D009484 3.0e-16 88.6 105 51.4
EL10Ac8g18992 Beta vulgaris HOM05D007531 ORTHO05D009484 5.2e-16 87.8 102 49.0
Sc14g0000480 Simmondsia chinensis HOM05D007531 ORTHO05D009484 6.8e-16 87.4 102 48.0
Peaxi162Scf00191g01018 Petunia axillaris HOM05D007531 ORTHO05D009484 8.9e-16 87.0 101 49.5
Thhalv10009175m.g Eutrema salsugineum HOM05D007531 ORTHO05D009484 2.0e-15 85.9 103 51.5
Lalb_Chr11g0074031 Lupinus albus HOM05D007531 ORTHO05D009484 2.2e-14 82.4 107 45.8
CDE06G0851 Ceratophyllum demersum HOM05D007531 ORTHO05D009484 8.3e-14 80.5 92 48.9
vmacro17085 Vaccinium macrocarpon HOM05D007531 ORTHO05D009484 1.1e-13 80.1 67 59.7
ECA246G1013 Erigeron canadensis HOM05D007531 ORTHO05D009484 1.4e-13 79.7 64 59.4
CARHR019840 Cardamine hirsuta HOM05D007531 ORTHO05D009484 1.8e-13 79.3 114 46.5
HPP92_021129 Vanilla planifolia HOM05D007531 ORTHO05D009484 1.8e-13 79.3 57 61.4
HPP92_021130 Vanilla planifolia HOM05D007531 ORTHO05D009484 1.8e-13 79.3 57 61.4
FAN28G0689 Fragaria x ananassa HOM05D007531 ORTHO05D009484 5.4e-13 77.8 107 43.9
Medtr4g124770 Medicago truncatula HOM05D007531 ORTHO05D009484 1.2e-12 76.6 98 42.9
TPR.G12718 Trifolium pratense HOM05D007531 ORTHO05D009484 1.6e-12 76.3 55 60.0
Cc06_g12620 Coffea canephora HOM05D007531 ORTHO05D009484 2.7e-12 75.5 112 44.6
MBI19_g38003_MAGBIO Magnolia biondii HOM05D007531 ORTHO05D009484 2.7e-12 75.5 85 51.8
AT1G19240 Arabidopsis thaliana HOM05D007531 ORTHO05D009484 3.5e-12 75.1 106 46.2
C05p17640 Brassica napus HOM05D007531 ORTHO05D009484 7.8e-12 73.9 60 61.7
Sabra06G0107500 Salix brachista HOM05D007531 ORTHO05D009484 7.8e-12 73.9 170 34.1
Aqoxy7G04136 Aquilegia oxysepala HOM05D007531 ORTHO05D009484 1.0e-11 73.6 102 45.1
unitig_578.g16405 Utricularia gibba HOM05D007531 ORTHO05D009484 1.0e-11 73.6 108 45.4
A06p15390 Brassica napus HOM05D007531 ORTHO05D009484 1.7e-11 72.8 60 60.0
BolC5t30467H Brassica oleracea HOM05D007531 ORTHO05D009484 1.7e-11 72.8 105 43.8
BraA06t24652Z Brassica rapa HOM05D007531 ORTHO05D009484 1.7e-11 72.8 60 60.0
Lj4g0024105 Lotus japonicus HOM05D007531 ORTHO05D009484 1.7e-11 72.8 99 43.4
Phvul.004G046500 Phaseolus vulgaris HOM05D007531 ORTHO05D009484 8.6e-11 70.5 53 56.6
Os01g0144700 Oryza sativa ssp. japonica HOM05D007531 ORTHO05D009484 1.9e-10 69.3 63 54.0
Psat0s2373g0160 Pisum sativum HOM05D007531 ORTHO05D009484 9.5e-10 67.0 82 45.1
VMungo1215G2546 Vigna mungo HOM05D007531 ORTHO05D009484 9.5e-10 67.0 48 58.3
Glyma.17G046400 Glycine max HOM05D007531 ORTHO05D009484 1.6e-09 66.2 48 58.3
Phvul.003G128000 Phaseolus vulgaris HOM05D007531 ORTHO05D009484 2.1e-09 65.9 51 56.9
arahy.Tifrunner.gnm1.ann1.ETL5CI Arachis hypogaea HOM05D007531 ORTHO05D009484 2.8e-09 65.5 79 43.0
arahy.Tifrunner.gnm1.ann1.J82KAY Arachis hypogaea HOM05D007531 ORTHO05D009484 2.8e-09 65.5 79 43.0
Sed0019513 Sechium edule HOM05D007531 ORTHO05D009484 1.1e-08 63.5 47 59.6
Glyma.13G113300 Glycine max HOM05D007531 ORTHO05D009484 8.9e-08 60.5 80 46.2
Gohir.D13G071750 Gossypium hirsutum HOM05D061539 ORTHO05D009484 2.2e-06 55.8 101 37.6


User provided reference genes

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