Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.7G189700 Prunus persica HOM05D005195 ORTHO05D006088 3.5e-216 754.6 360 100.0
MD15G1225300 Malus domestica HOM05D005195 ORTHO05D006088 7.4e-158 560.8 364 78.6
MD02G1105400 Malus domestica HOM05D005195 ORTHO05D006088 2.4e-156 555.8 364 77.7
RcHm_v2.0_Chr2g0096491 Rosa chinensis HOM05D005195 ORTHO05D006088 2.8e-125 452.6 365 65.5
CANSAT56G1537 Cannabis sativa HOM05D005195 ORTHO05D006088 1.5e-113 413.7 382 59.7
Dinv25492 Davidia involucrata HOM05D005195 ORTHO05D006088 1.9e-113 413.3 290 69.7
FAN26G2084 Fragaria x ananassa HOM05D005195 ORTHO05D006088 3.3e-113 412.5 364 61.5
FAN19G0176 Fragaria x ananassa HOM05D005195 ORTHO05D006088 5.5e-113 411.8 364 61.5
FAN26G0153 Fragaria x ananassa HOM05D005195 ORTHO05D006088 5.5e-113 411.8 364 61.5
GSVIVG01014997001 Vitis vinifera HOM05D005195 ORTHO05D006088 7.2e-113 411.4 277 71.5
FvH4_1g09650 Fragaria vesca HOM05D005195 ORTHO05D006088 1.6e-112 410.2 364 61.5
CiPaw.03G199200 Carya illinoinensis HOM05D005195 ORTHO05D006088 2.8e-112 409.5 292 69.9
QL11p003443 Quercus lobata HOM05D005195 ORTHO05D006088 1.7e-109 400.2 219 85.4
CSS0045452 Camellia sinensis var. sinensis HOM05D005195 ORTHO05D006088 8.3e-109 397.9 262 73.3
Gorai.010G094600 Gossypium raimondii HOM05D005195 ORTHO05D006088 3.2e-108 396.0 249 75.1
Gohir.D06G081300 Gossypium hirsutum HOM05D005195 ORTHO05D006088 4.1e-108 395.6 249 74.7
Haze_26081 Corylus avellana HOM05D005195 ORTHO05D006088 5.4e-108 395.2 247 75.7
Cfa002928 Carpinus fangiana HOM05D005195 ORTHO05D006088 9.2e-108 394.4 247 75.3
Duzib150G0538 Durio zibethinus HOM05D005195 ORTHO05D006088 1.2e-107 394.0 282 68.4
TAR383G0985 Trochodendron aralioides HOM05D005195 ORTHO05D006088 1.2e-107 394.0 229 79.9
Cpa.g.sc82.43 Carica papaya HOM05D005195 ORTHO05D006088 2.0e-107 393.3 276 68.5
Gohir.A06G082100 Gossypium hirsutum HOM05D005195 ORTHO05D006088 2.0e-107 393.3 249 74.3
PSO421G0417 Papaver somniferum HOM05D005195 ORTHO05D006088 3.5e-107 392.5 220 84.5
Nn6g35744 Nelumbo nucifera HOM05D005195 ORTHO05D006088 4.6e-107 392.1 253 72.7
TWI63G0336 Tripterygium wilfordii HOM05D005195 ORTHO05D006088 7.8e-107 391.3 248 75.4
Ciclev10008817m.g Citrus clementina HOM05D005195 ORTHO05D006088 1.7e-106 390.2 359 58.2
Duzib168G1130 Durio zibethinus HOM05D005195 ORTHO05D006088 1.7e-106 390.2 285 66.0
PGR142G1085 Punica granatum HOM05D005195 ORTHO05D006088 2.3e-106 389.8 281 68.3
Manes.16G088800 Manihot esculenta HOM05D005195 ORTHO05D006088 2.9e-106 389.4 371 56.6
Actinidia39605 Actinidia chinensis HOM05D005195 ORTHO05D006088 3.9e-106 389.0 229 77.3
FAN23G0045 Fragaria x ananassa HOM05D005195 ORTHO05D006088 3.9e-106 389.0 391 56.8
Atru.chr7.1799 Acer truncatum HOM05D005195 ORTHO05D006088 6.6e-106 388.3 279 68.8
EL10Ac8g18946 Beta vulgaris HOM05D005195 ORTHO05D006088 3.3e-105 386.0 308 62.7
Sabra06G0166900 Salix brachista HOM05D005195 ORTHO05D006088 5.6e-105 385.2 363 59.0
TWI34G1666 Tripterygium wilfordii HOM05D005195 ORTHO05D006088 9.5e-105 384.4 245 74.7
Thecc.09G067900 Theobroma cacao HOM05D005195 ORTHO05D006088 1.2e-104 384.0 307 63.2
Potri.006G216500 Populus trichocarpa HOM05D005195 ORTHO05D006088 1.6e-104 383.6 366 58.2
Cc00_g13790 Coffea canephora HOM05D005195 ORTHO05D006088 1.4e-103 380.6 217 79.3
Hund08917 Selenicereus undatus HOM05D005195 ORTHO05D006088 1.4e-103 380.6 248 72.6
Aqoxy7G00925 Aquilegia oxysepala HOM05D005195 ORTHO05D006088 3.1e-103 379.4 249 71.1
Duzib187G0988 Durio zibethinus HOM05D005195 ORTHO05D006088 8.9e-103 377.9 283 65.0
Eucgr.C00758 Eucalyptus grandis HOM05D005195 ORTHO05D006088 1.2e-102 377.5 372 55.9
Lj7A694G45 Lonicera japonica HOM05D005195 ORTHO05D006088 2.6e-102 376.3 233 76.0
THA.LOC104804446 Tarenaya hassleriana HOM05D005195 ORTHO05D006088 7.5e-102 374.8 206 81.6
MSTRG.26504 Avicennia marina HOM05D005195 ORTHO05D006088 1.7e-101 373.6 268 67.2
Oeu010853.1 Olea europaea HOM05D005195 ORTHO05D006088 2.2e-101 373.2 303 62.7
Oeu010852.1 Olea europaea HOM05D005195 ORTHO05D006088 2.9e-101 372.9 303 62.4
Nitab4.5_0000055g0120 Nicotiana tabacum HOM05D005195 ORTHO05D006088 3.7e-101 372.5 282 65.2
Aa31sc810G10 Aethionema arabicum HOM05D005195 ORTHO05D006088 2.4e-100 369.8 235 71.9
Lj6g0001650 Lotus japonicus HOM05D005195 ORTHO05D006088 2.4e-100 369.8 317 61.5
Thhalv10025620m.g Eutrema salsugineum HOM05D005195 ORTHO05D006088 4.1e-100 369.0 206 77.7
PSO104G0051 Papaver somniferum HOM05D005195 ORTHO05D006088 4.1e-100 369.0 220 80.0
arahy.Tifrunner.gnm1.ann1.EYB30S Arachis hypogaea HOM05D005195 ORTHO05D006088 5.4e-100 368.6 205 85.9
Gorai.001G018400 Gossypium raimondii HOM05D005195 ORTHO05D006088 5.4e-100 368.6 291 61.9
Sopen07g006530 Solanum pennellii HOM05D005195 ORTHO05D006088 5.4e-100 368.6 276 64.9
Glyma.17G044200 Glycine max HOM05D005195 ORTHO05D006088 9.2e-100 367.9 231 77.1
BcaC09g52118 Brassica carinata HOM05D005195 ORTHO05D006088 1.6e-99 367.1 206 76.7
Carub.0007s0732 Capsella rubella HOM05D005195 ORTHO05D006088 1.6e-99 367.1 206 78.6
BcaNung02154 Brassica carinata HOM05D005195 ORTHO05D006088 2.0e-99 366.7 289 63.7
C07p59500 Brassica napus HOM05D005195 ORTHO05D006088 2.0e-99 366.7 289 63.7
BolC7t46394H Brassica oleracea HOM05D005195 ORTHO05D006088 2.0e-99 366.7 278 62.6
AL7G18430 Arabidopsis lyrata HOM05D005195 ORTHO05D006088 2.7e-99 366.3 245 71.0
MBI19_g32876_MAGBIO Magnolia biondii HOM05D005195 ORTHO05D006088 2.7e-99 366.3 295 61.7
CAN.G88.12 Capsicum annuum HOM05D005195 ORTHO05D006088 3.5e-99 365.9 225 74.7
Nitab4.5_0001114g0020 Nicotiana tabacum HOM05D005195 ORTHO05D006088 7.8e-99 364.8 282 64.2
Sp7g30880 Schrenkiella parvula HOM05D005195 ORTHO05D006088 7.8e-99 364.8 276 62.3
MELO3C015557.2 Cucumis melo HOM05D005195 ORTHO05D006088 1.7e-98 363.6 279 64.9
Gohir.D07G017700 Gossypium hirsutum HOM05D005195 ORTHO05D006088 1.7e-98 363.6 292 61.3
Gohir.A07G017900 Gossypium hirsutum HOM05D005195 ORTHO05D006088 3.9e-98 362.5 293 61.4
Phvul.003G126200 Phaseolus vulgaris HOM05D005195 ORTHO05D006088 3.9e-98 362.5 205 83.4
VMungo1215G2768 Vigna mungo HOM05D005195 ORTHO05D006088 3.9e-98 362.5 205 82.4
AT4G33140 Arabidopsis thaliana HOM05D005195 ORTHO05D006088 5.0e-98 362.1 280 62.5
Lj4g0025754 Lotus japonicus HOM05D005195 ORTHO05D006088 5.0e-98 362.1 221 78.3
Phvul.009G221900 Phaseolus vulgaris HOM05D005195 ORTHO05D006088 6.6e-98 361.7 202 82.7
ClCG03G014710 Citrullus lanatus HOM05D005195 ORTHO05D006088 8.6e-98 361.3 299 62.5
Migut.J00869 Erythranthe guttata HOM05D005195 ORTHO05D006088 1.1e-97 360.9 238 73.9
TPR.G12689 Trifolium pratense HOM05D005195 ORTHO05D006088 1.5e-97 360.5 267 67.4
MSTRG.19420 Avicennia marina HOM05D005195 ORTHO05D006088 1.9e-97 360.1 230 73.0
arahy.Tifrunner.gnm1.ann1.QID06X Arachis hypogaea HOM05D005195 ORTHO05D006088 2.5e-97 359.8 205 84.9
VMungo1309G1826 Vigna mungo HOM05D005195 ORTHO05D006088 2.5e-97 359.8 213 79.3
AUR62028337 Chenopodium quinoa HOM05D005195 ORTHO05D006088 3.3e-97 359.4 294 60.9
Glyma.13G115600 Glycine max HOM05D005195 ORTHO05D006088 3.3e-97 359.4 329 61.7
C01p05540 Brassica napus HOM05D005195 ORTHO05D006088 4.3e-97 359.0 229 70.7
BolC1t00534H Brassica oleracea HOM05D005195 ORTHO05D006088 4.3e-97 359.0 229 70.7
CsaV3_1G041450 Cucumis sativus L. HOM05D005195 ORTHO05D006088 9.5e-97 357.8 204 80.4
Lalb_Chr13g0299131 Lupinus albus HOM05D005195 ORTHO05D006088 9.5e-97 357.8 352 56.0
A03p61820 Brassica napus HOM05D005195 ORTHO05D006088 1.2e-96 357.5 286 61.9
BraA03t15220Z Brassica rapa HOM05D005195 ORTHO05D006088 1.2e-96 357.5 286 61.9
Lalb_Chr07g0181481 Lupinus albus HOM05D005195 ORTHO05D006088 1.2e-96 357.5 351 56.4
A01p05070 Brassica napus HOM05D005195 ORTHO05D006088 1.6e-96 357.1 207 75.8
SalBow6G3026 Salvia bowleyana HOM05D005195 ORTHO05D006088 2.1e-96 356.7 239 71.1
Psat4g019920 Pisum sativum HOM05D005195 ORTHO05D006088 2.8e-96 356.3 269 66.5
Medtr4g124450 Medicago truncatula HOM05D005195 ORTHO05D006088 4.7e-96 355.5 205 80.5
AUR62025326 Chenopodium quinoa HOM05D005195 ORTHO05D006088 8.1e-96 354.8 294 60.5
TPR.G25386 Trifolium pratense HOM05D005195 ORTHO05D006088 1.4e-95 354.0 208 80.3
Medtr2g044900 Medicago truncatula HOM05D005195 ORTHO05D006088 2.3e-95 353.2 315 61.0
Psat1g139120 Pisum sativum HOM05D005195 ORTHO05D006088 2.3e-95 353.2 223 77.1
Sc14g0000920 Simmondsia chinensis HOM05D005195 ORTHO05D006088 2.3e-95 353.2 195 81.5
BraA01t00489Z Brassica rapa HOM05D005195 ORTHO05D006088 5.2e-95 352.1 278 61.2
Glyma.09G077400 Glycine max HOM05D005195 ORTHO05D006088 6.8e-95 351.7 311 60.5
Sed0003985 Sechium edule HOM05D005195 ORTHO05D006088 6.8e-95 351.7 347 55.0
ATR0099G089 Amborella trichopoda HOM05D005195 ORTHO05D006088 8.9e-95 351.3 205 77.1
Os06g0192900 Oryza sativa ssp. japonica HOM05D005195 ORTHO05D006088 2.0e-94 350.1 247 64.8
Actinidia33513 Actinidia chinensis HOM05D000417 ORTHO05D006088 2.6e-94 349.7 274 64.2
Ca_21349_v3 Cicer arietinum L. HOM05D005195 ORTHO05D006088 2.6e-94 349.7 206 79.6
Lalb_Chr12g0200391 Lupinus albus HOM05D005195 ORTHO05D006088 4.4e-94 349.0 334 56.3
Zm00001eb374160 Zea mays HOM05D005195 ORTHO05D006088 5.8e-94 348.6 245 66.1
CDE05G1368 Ceratophyllum demersum HOM05D005195 ORTHO05D006088 5.4e-92 342.0 204 75.5
Rhsim05G0001200 Rhododendron simsii HOM05D005195 ORTHO05D006088 1.0e-90 337.8 378 52.1
HPP92_002369 Vanilla planifolia HOM05D005195 ORTHO05D006088 1.5e-89 334.0 263 62.4
unitig_578.g15872 Utricularia gibba HOM05D005195 ORTHO05D006088 2.8e-88 329.7 198 75.3
HPP92_027596 Vanilla planifolia HOM05D005195 ORTHO05D006088 2.8e-88 329.7 201 74.6
SHI27969 Sapria himalayana HOM05D005195 ORTHO05D006088 2.3e-87 326.6 262 63.7
Oeu055315.1 Olea europaea HOM05D005195 ORTHO05D006088 6.4e-85 318.5 233 64.8
CDE06G1243 Ceratophyllum demersum HOM05D005195 ORTHO05D006088 8.4e-85 318.2 219 63.9
CDE07G0654 Ceratophyllum demersum HOM05D005195 ORTHO05D006088 1.4e-84 317.4 220 64.1
HPP92_019108 Vanilla planifolia HOM05D005195 ORTHO05D006088 1.2e-83 314.3 198 68.7
SEGI_21946 Sequoiadendron giganteum HOM05D005195 ORTHO05D006088 2.1e-80 303.5 256 54.7
CARHR241160 Cardamine hirsuta HOM05D005195 ORTHO05D006088 2.7e-75 286.6 162 75.3
Migut.L00513 Erythranthe guttata HOM05D005195 ORTHO05D006088 1.7e-74 283.9 162 76.5
Mapoly0181s0009 Marchantia polymorpha HOM05D005195 ORTHO05D006088 5.6e-73 278.9 202 59.4
vmacro06379 Vaccinium macrocarpon HOM05D005195 ORTHO05D006088 9.6e-73 278.1 321 50.2
Ca_02313_v3 Cicer arietinum L. HOM05D005195 ORTHO05D006088 1.3e-72 277.7 160 78.1
Pp3c5_26930 Physcomitrium patens HOM05D005195 ORTHO05D006088 1.2e-70 271.2 201 60.7
Dinv42438 Davidia involucrata HOM05D005195 ORTHO05D006088 3.4e-70 269.6 222 63.1
Solyc07g017700.3 Solanum lycopersicum HOM05D005195 ORTHO05D006088 3.2e-68 263.1 151 75.5
DCAR_024788 Daucus carota HOM05D005195 ORTHO05D006088 3.5e-67 259.6 151 80.8
Glyma.17G255700 Glycine max HOM05D005195 ORTHO05D006088 6.6e-66 255.4 145 79.3
Cre16.g661550 Chlamydomonas reinhardtii HOM05D005195 ORTHO05D006088 7.1e-60 235.3 226 50.9
Peaxi162Scf00452g00117 Petunia axillaris HOM05D005195 ORTHO05D006088 2.2e-53 213.8 122 74.6
EL10Ac7g16303 Beta vulgaris HOM05D005195 ORTHO05D006088 7.1e-52 208.8 152 65.1
RcHm_v2.0_Chr2g0117071 Rosa chinensis HOM05D005195 ORTHO05D006088 9.6e-49 198.4 152 63.8
PRCOL_00003934 Prasinoderma coloniale HOM05D005195 ORTHO05D006088 7.6e-46 188.7 169 50.9
Pp3c6_3390 Physcomitrium patens HOM05D005195 ORTHO05D006088 3.4e-30 136.7 147 44.2
SEGI_31296 Sequoiadendron giganteum HOM05D005195 ORTHO05D006088 3.7e-24 116.7 83 55.4
Solyc07g017710.1 Solanum lycopersicum HOM05D005195 ORTHO05D006088 8.5e-21 105.5 124 48.4
SGA_v2.0_scaffold31G12703 Striga asiatica HOM05D005195 ORTHO05D006088 9.4e-20 102.1 147 44.2
PGSC0003DMG400002304 Solanum tuberosum HOM05D005195 ORTHO05D006088 1.3e-16 91.7 119 50.4
COL.COLO4_21182 Corchorus olitorius HOM05D005195 ORTHO05D006088 6.3e-16 89.4 148 40.5
Migut.L01605 Erythranthe guttata HOM05D005195 ORTHO05D006088 1.4e-15 88.2 129 45.7
Peaxi162Scf00452g00122 Petunia axillaris HOM05D005195 ORTHO05D006088 1.4e-15 88.2 127 47.2
Ca_29779_v3 Cicer arietinum L. HOM05D000417 ORTHO05D000342 1.7e-13 81.3 49 79.6
Zm00001eb045610 Zea mays HOM05D005195 ORTHO05D006088 1.2e-11 75.1 89 55.1
EL10Ac8g18949 Beta vulgaris HOM05D005195 ORTHO05D006088 2.8e-08 63.9 37 67.6
SEGI_31523 Sequoiadendron giganteum HOM05D005195 ORTHO05D006088 5.9e-06 56.2 40 60.0


User provided reference genes

Program Settings