Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.7G189100 Prunus persica HOM05D005425 ORTHO05D006686 6.5e-102 374.4 238 100.0
MD15G1225900 Malus domestica HOM05D005425 ORTHO05D006686 2.3e-75 286.2 246 81.3
MD02G1106000 Malus domestica HOM05D005425 ORTHO05D006686 9.1e-72 274.2 245 79.2
RcHm_v2.0_Chr2g0096571 Rosa chinensis HOM05D005425 ORTHO05D006686 4.6e-55 218.8 241 66.8
FvH4_1g09870 Fragaria vesca HOM05D005425 ORTHO05D006686 1.2e-52 210.7 241 66.0
FAN19G0780 Fragaria x ananassa HOM05D005425 ORTHO05D006686 3.6e-52 209.1 242 66.9
COL.COLO4_21175 Corchorus olitorius HOM05D005425 ORTHO05D006686 5.4e-48 195.3 248 57.3
FAN23G2130 Fragaria x ananassa HOM05D005425 ORTHO05D006686 2.7e-47 193.0 303 54.5
Duzib168G1380 Durio zibethinus HOM05D005425 ORTHO05D006686 1.0e-46 191.0 246 58.1
FAN28G1834 Fragaria x ananassa HOM05D005425 ORTHO05D006686 6.6e-46 188.3 296 55.1
Thecc.09G067100 Theobroma cacao HOM05D005425 ORTHO05D006686 8.6e-46 188.0 249 57.0
CANSAT56G0436 Cannabis sativa HOM05D005425 ORTHO05D006686 1.1e-45 187.6 241 65.1
Lj4g0004112 Lotus japonicus HOM05D005425 ORTHO05D006686 1.9e-45 186.8 111 87.4
CANSAT56G2296 Cannabis sativa HOM05D005425 ORTHO05D006686 3.3e-45 186.0 244 64.3
Atru.chr7.1809 Acer truncatum HOM05D005425 ORTHO05D006686 4.3e-45 185.7 243 67.1
Cfa010679 Carpinus fangiana HOM05D005425 ORTHO05D006686 5.6e-45 185.3 113 84.1
DCAR_012869 Daucus carota HOM05D005425 ORTHO05D006686 5.6e-45 185.3 178 66.3
Migut.C01372 Erythranthe guttata HOM05D005425 ORTHO05D006686 5.6e-45 185.3 177 71.8
Duzib150G0231 Durio zibethinus HOM05D005425 ORTHO05D006686 7.3e-45 184.9 249 59.4
Gorai.001G018900 Gossypium raimondii HOM05D005425 ORTHO05D006686 7.3e-45 184.9 247 56.3
arahy.Tifrunner.gnm1.ann1.I1NZHN Arachis hypogaea HOM05D005425 ORTHO05D006686 9.5e-45 184.5 115 81.7
ECA247G3713 Erigeron canadensis HOM05D005425 ORTHO05D006686 9.5e-45 184.5 112 83.9
Haze_03605 Corylus avellana HOM05D006517 ORTHO05D007886 1.6e-44 183.7 239 62.3
TWI63G1799 Tripterygium wilfordii HOM05D005425 ORTHO05D006686 2.8e-44 183.0 212 64.2
arahy.Tifrunner.gnm1.ann1.A16VYK Arachis hypogaea HOM05D005425 ORTHO05D006686 4.7e-44 182.2 115 80.9
PGR044G1074 Punica granatum HOM05D005425 ORTHO05D006686 4.7e-44 182.2 111 87.4
Gohir.A07G018500 Gossypium hirsutum HOM05D005425 ORTHO05D006686 6.2e-44 181.8 247 55.9
Gohir.D07G018300 Gossypium hirsutum HOM05D005425 ORTHO05D006686 6.2e-44 181.8 247 55.9
Cc01_g12410 Coffea canephora HOM05D005425 ORTHO05D006686 8.1e-44 181.4 257 54.5
Potri.006G217400 Populus trichocarpa HOM05D005425 ORTHO05D006686 8.1e-44 181.4 243 54.7
VMungo1215G3244 Vigna mungo HOM05D005425 ORTHO05D006686 1.1e-43 181.0 113 83.2
MSTRG.1593 Avicennia marina HOM05D005425 ORTHO05D006686 1.4e-43 180.6 247 58.7
HanXRQChr02g0040411 Helianthus annuus HOM05D005425 ORTHO05D006686 1.4e-43 180.6 250 60.0
Haze_26083 Corylus avellana HOM05D005425 ORTHO05D006686 1.8e-43 180.3 241 62.2
Eucgr.C00752 Eucalyptus grandis HOM05D005425 ORTHO05D006686 1.8e-43 180.3 182 70.9
Dinv19577 Davidia involucrata HOM05D005425 ORTHO05D006686 3.1e-43 179.5 180 72.2
Lalb_Chr07g0181511 Lupinus albus HOM05D005425 ORTHO05D006686 3.1e-43 179.5 113 80.5
Phvul.003G125400 Phaseolus vulgaris HOM05D005425 ORTHO05D006686 4.0e-43 179.1 108 87.0
AUR62017596 Chenopodium quinoa HOM05D005425 ORTHO05D006686 6.8e-43 178.3 115 80.0
Ciclev10009195m.g Citrus clementina HOM05D005425 ORTHO05D006686 6.8e-43 178.3 105 87.6
GSVIVG01000275001 Vitis vinifera HOM05D005425 ORTHO05D006686 8.9e-43 177.9 108 85.2
Lsat_1_v5_gn_1_2721 Lactuca sativa HOM05D005425 ORTHO05D006686 1.2e-42 177.6 115 78.3
PSO675G8782 Papaver somniferum HOM05D005425 ORTHO05D006686 1.2e-42 177.6 113 81.4
TWI34G0652 Tripterygium wilfordii HOM05D005425 ORTHO05D006686 1.2e-42 177.6 115 80.0
AUR62015135 Chenopodium quinoa HOM05D005425 ORTHO05D006686 2.0e-42 176.8 115 79.1
Lalb_Chr12g0200431 Lupinus albus HOM05D005425 ORTHO05D006686 2.0e-42 176.8 108 82.4
CiPaw.03G198700 Carya illinoinensis HOM05D005425 ORTHO05D006686 2.6e-42 176.4 109 82.6
Glyma.17G043500 Glycine max HOM05D005425 ORTHO05D006686 3.4e-42 176.0 113 80.5
TPR.G12630 Trifolium pratense HOM05D005425 ORTHO05D006686 3.4e-42 176.0 114 78.9
Ca_21353_v3 Cicer arietinum L. HOM05D005425 ORTHO05D006686 4.4e-42 175.6 113 79.6
Glyma.13G116300 Glycine max HOM05D005425 ORTHO05D006686 5.8e-42 175.3 113 80.5
Medtr4g123593 Medicago truncatula HOM05D005425 ORTHO05D006686 5.8e-42 175.3 113 81.4
ATR0006G051 Amborella trichopoda HOM05D005425 ORTHO05D006686 7.5e-42 174.9 111 81.1
Lj4P729T25 Lonicera japonica HOM05D005425 ORTHO05D006686 9.9e-42 174.5 108 81.5
Nn6g31504 Nelumbo nucifera HOM05D005425 ORTHO05D006686 1.3e-41 174.1 105 83.8
Psat4g020320 Pisum sativum HOM05D005425 ORTHO05D006686 1.3e-41 174.1 109 82.6
PSO717G0103 Papaver somniferum HOM05D005425 ORTHO05D006686 2.2e-41 173.3 113 79.6
EL10Ac9g22844 Beta vulgaris HOM05D005425 ORTHO05D006686 2.9e-41 172.9 113 78.8
Aqoxy6G03062 Aquilegia oxysepala HOM05D005425 ORTHO05D006686 6.4e-41 171.8 110 80.0
SEGI_31971 Sequoiadendron giganteum HOM05D005425 ORTHO05D006686 6.4e-41 171.8 114 75.4
vmacro16402 Vaccinium macrocarpon HOM05D005425 ORTHO05D006686 6.4e-41 171.8 113 79.6
QL11p003539 Quercus lobata HOM05D005425 ORTHO05D006686 1.1e-40 171.0 295 53.6
CsaV3_1G041480 Cucumis sativus L. HOM05D005425 ORTHO05D006686 3.2e-40 169.5 234 55.6
Oeu023197.1 Olea europaea HOM05D005425 ORTHO05D006686 3.2e-40 169.5 248 55.6
Actinidia20626 Actinidia chinensis HOM05D005425 ORTHO05D006686 4.1e-40 169.1 108 82.4
Os04g0653100 Oryza sativa ssp. japonica HOM05D005425 ORTHO05D006686 4.1e-40 169.1 107 79.4
Sc19g0002240 Simmondsia chinensis HOM05D005425 ORTHO05D006686 4.1e-40 169.1 115 75.7
Zm00001eb068040 Zea mays HOM05D005425 ORTHO05D006686 4.1e-40 169.1 109 79.8
Sed0015214 Sechium edule HOM05D005425 ORTHO05D006686 5.4e-40 168.7 179 64.8
Sabra06G0167600 Salix brachista HOM05D005425 ORTHO05D006686 7.1e-40 168.3 239 61.5
CSS0042296 Camellia sinensis var. sinensis HOM05D005425 ORTHO05D006686 2.1e-39 166.8 104 80.8
Ah.01g013630 Amaranthus hybridus HOM05D005425 ORTHO05D006686 3.5e-39 166.0 115 73.9
Hund24245 Selenicereus undatus HOM05D000001 ORTHO05D000003 4.6e-39 165.6 106 80.2
HPP92_002368 Vanilla planifolia HOM05D005425 ORTHO05D006686 4.6e-39 165.6 108 75.9
HPP92_027595 Vanilla planifolia HOM05D005425 ORTHO05D006686 4.6e-39 165.6 108 75.9
Manes.03G055300 Manihot esculenta HOM05D005425 ORTHO05D006686 7.8e-39 164.9 250 55.2
TAR383G0806 Trochodendron aralioides HOM05D005425 ORTHO05D006686 7.8e-39 164.9 131 69.5
HPP92_010993 Vanilla planifolia HOM05D005425 ORTHO05D006686 2.3e-38 163.3 109 78.0
MBI13_g09074_MAGBIO Magnolia biondii HOM05D005425 ORTHO05D006686 3.0e-38 162.9 114 72.8
Manes.16G088201 Manihot esculenta HOM05D005425 ORTHO05D006686 3.0e-38 162.9 106 77.4
THA.LOC104810974 Tarenaya hassleriana HOM05D005425 ORTHO05D006686 6.6e-38 161.8 251 56.6
AT3G43520 Arabidopsis thaliana HOM05D005425 ORTHO05D006686 8.6e-38 161.4 243 54.7
unitig_578.g16119 Utricularia gibba HOM05D005425 ORTHO05D006686 1.1e-37 161.0 216 54.6
Sp5g17760 Schrenkiella parvula HOM05D005425 ORTHO05D006686 1.5e-37 160.6 248 49.6
AL5G21490 Arabidopsis lyrata HOM05D005425 ORTHO05D006686 2.5e-37 159.8 246 53.7
Nitab4.5_0000610g0160 Nicotiana tabacum HOM05D005425 ORTHO05D006686 2.5e-37 159.8 231 60.6
THA.LOC104799598 Tarenaya hassleriana HOM05D005425 ORTHO05D006686 2.5e-37 159.8 249 54.2
Solyc11g073240.2 Solanum lycopersicum HOM05D005425 ORTHO05D006686 3.3e-37 159.5 250 54.0
CAN.G764.11 Capsicum annuum HOM05D005425 ORTHO05D006686 4.3e-37 159.1 179 67.0
MBI13_g05972_MAGBIO Magnolia biondii HOM05D005425 ORTHO05D006686 9.5e-37 157.9 113 73.5
Rhsim12G0137300 Rhododendron simsii HOM05D005425 ORTHO05D006686 9.5e-37 157.9 116 74.1
Carub.0005s0927 Capsella rubella HOM05D005425 ORTHO05D006686 1.6e-36 157.1 245 56.7
Sopen11g030870 Solanum pennellii HOM05D005425 ORTHO05D006686 1.6e-36 157.1 250 56.8
Peaxi162Scf00406g00239 Petunia axillaris HOM05D005425 ORTHO05D006686 3.6e-36 156.0 184 67.4
Aa31LG4G13370 Aethionema arabicum HOM05D005425 ORTHO05D006686 1.4e-35 154.1 258 52.7
BcaC01g02214 Brassica carinata HOM05D005425 ORTHO05D006686 1.8e-35 153.7 243 47.7
Pp3c23_11420 Physcomitrium patens HOM05D005425 ORTHO05D006686 3.1e-35 152.9 112 70.5
C03p67740 Brassica napus HOM05D005425 ORTHO05D006686 5.2e-35 152.1 243 56.0
BolSC21t60236H Brassica oleracea HOM05D005425 ORTHO05D006686 5.2e-35 152.1 243 56.0
PGSC0003DMG400015542 Solanum tuberosum HOM05D005425 ORTHO05D006686 6.8e-35 151.8 109 74.3
A06p26640 Brassica napus HOM05D005425 ORTHO05D006686 8.9e-35 151.4 239 56.5
BraA06t25598Z Brassica rapa HOM05D005425 ORTHO05D006686 8.9e-35 151.4 239 56.5
PGSC0003DMG401015541 Solanum tuberosum HOM05D005425 ORTHO05D006686 1.5e-34 150.6 247 58.3
PGSC0003DMG402015541 Solanum tuberosum HOM05D005425 ORTHO05D006686 1.5e-34 150.6 247 58.3
CDE11G0474 Ceratophyllum demersum HOM05D005425 ORTHO05D006686 2.6e-34 149.8 114 67.5
CARHR098710 Cardamine hirsuta HOM05D005425 ORTHO05D006686 4.4e-34 149.1 112 67.0
AUR62026084 Chenopodium quinoa HOM05D005425 ORTHO05D006686 1.7e-33 147.1 108 71.3
BcaB02g10778 Brassica carinata HOM05D005425 ORTHO05D006686 2.2e-33 146.7 244 55.7
Ah.04g151490 Amaranthus hybridus HOM05D005425 ORTHO05D006686 2.9e-33 146.4 108 70.4
Pp3c23_5560 Physcomitrium patens HOM05D005425 ORTHO05D006686 6.4e-33 145.2 111 65.8
SMO347G0418 Selaginella moellendorffii HOM05D005425 ORTHO05D006686 1.1e-32 144.4 114 65.8
AUR62024499 Chenopodium quinoa HOM05D005425 ORTHO05D006686 1.9e-32 143.7 108 70.4
THA.LOC104804448 Tarenaya hassleriana HOM05D005425 ORTHO05D006686 2.4e-32 143.3 108 69.4
EL10Ac3g07129 Beta vulgaris HOM05D005425 ORTHO05D006686 5.4e-32 142.1 113 65.5
Sc13g0001610 Simmondsia chinensis HOM05D005425 ORTHO05D006686 1.6e-31 140.6 103 69.9
Carub.0004s0606 Capsella rubella HOM05D005425 ORTHO05D006686 3.9e-30 136.0 108 67.6
SGA_v2.0_scaffold118G32605 Striga asiatica HOM05D005425 ORTHO05D006686 3.9e-30 136.0 174 54.0
SEGI_36327 Sequoiadendron giganteum HOM05D005425 ORTHO05D006686 5.1e-30 135.6 102 67.6
AagrBONN_evm.TU.Sc2ySwM_344.3815 Anthoceros agrestis HOM05D005425 ORTHO05D006686 6.6e-30 135.2 102 65.7
CARHR115050 Cardamine hirsuta HOM05D005425 ORTHO05D006686 4.3e-29 132.5 103 68.9
CDE05G1879 Ceratophyllum demersum HOM05D005425 ORTHO05D006686 4.3e-29 132.5 97 69.1
Sp4g06390 Schrenkiella parvula HOM05D005425 ORTHO05D006686 4.3e-29 132.5 103 69.9
AT2G26240 Arabidopsis thaliana HOM05D005425 ORTHO05D006686 5.6e-29 132.1 103 68.0
SMO351G0348 Selaginella moellendorffii HOM05D005425 ORTHO05D006686 1.2e-28 131.0 103 63.1
BcaC07g40833 Brassica carinata HOM05D005425 ORTHO05D006686 1.6e-28 130.6 103 68.0
A09p55370 Brassica napus HOM05D000181 ORTHO05D004115 1.6e-28 130.6 103 68.0
C08p38290 Brassica napus HOM05D000181 ORTHO05D004115 1.6e-28 130.6 103 68.0
BolC8t51404H Brassica oleracea HOM05D005425 ORTHO05D006686 1.6e-28 130.6 103 68.0
BraA09t40938Z Brassica rapa HOM05D005425 ORTHO05D006686 1.6e-28 130.6 103 68.0
BcaB08g35283 Brassica carinata HOM05D005425 ORTHO05D006686 2.1e-28 130.2 103 68.0
AL4G18820 Arabidopsis lyrata HOM05D005425 ORTHO05D006686 6.2e-28 128.6 102 67.6
vmacro13523 Vaccinium macrocarpon HOM05D005425 ORTHO05D006686 1.1e-27 127.9 104 68.3
Mapoly0059s0086 Marchantia polymorpha HOM05D005425 ORTHO05D006686 2.4e-27 126.7 94 67.0
PGR142G0340 Punica granatum HOM05D005425 ORTHO05D006686 5.3e-27 125.6 108 65.7
Aa31LG5G9560 Aethionema arabicum HOM05D005425 ORTHO05D006686 1.5e-26 124.0 103 65.0
FvH4_1g06370 Fragaria vesca HOM05D005425 ORTHO05D046282 3.3e-21 106.3 196 57.7
Thhalv10002166m.g Eutrema salsugineum HOM05D005425 ORTHO05D006686 2.1e-20 103.6 84 66.7
FAN19G2796 Fragaria x ananassa HOM05D005425 ORTHO05D046282 6.2e-20 102.1 196 56.6
CBR_g16036 Chara braunii HOM05D005425 ORTHO05D006686 5.3e-19 99.0 102 51.0
Thhalv10002673m.g Eutrema salsugineum HOM05D005425 ORTHO05D006686 1.4e-16 90.9 62 77.4
Zm00001eb432380 Zea mays HOM05D005425 ORTHO05D006686 2.3e-14 83.6 64 68.8
C06p06010 Brassica napus HOM05D004888 ORTHO05D005792 5.5e-08 62.4 106 41.5
BolC6t35714H Brassica oleracea HOM05D004888 ORTHO05D005792 5.5e-08 62.4 106 41.5
Lsat_1_v5_gn_7_108760 Lactuca sativa HOM05D004888 ORTHO05D005792 5.5e-08 62.4 106 36.8
Migut.M01776 Erythranthe guttata HOM05D004888 ORTHO05D005792 9.3e-08 61.6 104 38.5
Zm00001eb041420 Zea mays HOM05D001962 ORTHO05D002236 9.3e-08 61.6 40 82.5
BraA06t23494Z Brassica rapa HOM05D004888 ORTHO05D005792 1.6e-07 60.8 106 40.6
Nitab4.5_0001393g0120 Nicotiana tabacum HOM05D004888 ORTHO05D005792 1.6e-07 60.8 105 37.1
BcaC08g43255 Brassica carinata HOM05D004888 ORTHO05D005792 2.1e-07 60.5 106 39.6
PGSC0003DMG400014390 Solanum tuberosum HOM05D004888 ORTHO05D005792 2.1e-07 60.5 105 37.1
SGA_v2.0_scaffold8G04307 Striga asiatica HOM05D004888 ORTHO05D005792 2.7e-07 60.1 105 37.1
CAN.G1781.4 Capsicum annuum HOM05D004888 ORTHO05D005792 3.5e-07 59.7 105 35.2
DCAR_010046 Daucus carota HOM05D004888 ORTHO05D005792 3.5e-07 59.7 105 37.1
Thecc.07G042500 Theobroma cacao HOM05D004888 ORTHO05D005792 4.6e-07 59.3 105 35.2
BcaB07g33513 Brassica carinata HOM05D004888 ORTHO05D005792 6.0e-07 58.9 106 39.6
A06p02870 Brassica napus HOM05D004888 ORTHO05D005792 6.0e-07 58.9 106 39.6
HanXRQChr11g0336191 Helianthus annuus HOM05D004888 ORTHO05D005792 7.9e-07 58.5 105 39.0
Solyc10g006310.3 Solanum lycopersicum HOM05D004888 ORTHO05D005792 1.0e-06 58.2 105 39.0
Aqoxy1G03261 Aquilegia oxysepala HOM05D004888 ORTHO05D005792 1.3e-06 57.8 105 40.0
MSTRG.6911 Avicennia marina HOM05D004888 ORTHO05D005792 1.3e-06 57.8 105 34.3
Oeu020536.1 Olea europaea HOM05D005425 ORTHO05D006686 1.3e-06 57.8 59 54.2
Peaxi162Scf00964g00141 Petunia axillaris HOM05D004888 ORTHO05D005792 1.3e-06 57.8 104 36.5
Sopen10g002260 Solanum pennellii HOM05D004888 ORTHO05D005792 1.3e-06 57.8 105 39.0
Gohir.D01G066100 Gossypium hirsutum HOM05D004888 ORTHO05D005792 1.8e-06 57.4 105 33.3
Gorai.002G088000 Gossypium raimondii HOM05D004888 ORTHO05D005792 1.8e-06 57.4 105 33.3
Nitab4.5_0005048g0090 Nicotiana tabacum HOM05D004888 ORTHO05D005792 1.8e-06 57.4 98 37.8
PGR031G1607 Punica granatum HOM05D004888 ORTHO05D005792 1.8e-06 57.4 105 37.1
Manes.03G124500 Manihot esculenta HOM05D004888 ORTHO05D005792 2.3e-06 57.0 105 34.3
CDE11G1067 Ceratophyllum demersum HOM05D004888 ORTHO05D005792 3.0e-06 56.6 105 36.2
CANSAT10G0001 Cannabis sativa HOM05D004888 ORTHO05D005792 3.9e-06 56.2 105 36.2
CANSAT21G1950 Cannabis sativa HOM05D004888 ORTHO05D005792 3.9e-06 56.2 105 36.2
CBR_g50174 Chara braunii HOM05D004888 ORTHO05D005792 3.9e-06 56.2 105 37.1
Ciclev10009934m.g Citrus clementina HOM05D004888 ORTHO05D005792 3.9e-06 56.2 105 37.1
ECA236G1052 Erigeron canadensis HOM05D004888 ORTHO05D005792 3.9e-06 56.2 105 35.2
Potri.011G138100 Populus trichocarpa HOM05D004888 ORTHO05D005792 3.9e-06 56.2 105 34.3
unitig_62.g23280 Utricularia gibba HOM05D004888 ORTHO05D005792 3.9e-06 56.2 105 34.3
CDE05G3279 Ceratophyllum demersum HOM05D004888 ORTHO05D005792 5.1e-06 55.8 105 36.2
Ciclev10009938m.g Citrus clementina HOM05D004888 ORTHO05D005792 5.1e-06 55.8 105 38.1
QL08p010712 Quercus lobata HOM05D004888 ORTHO05D005792 5.1e-06 55.8 104 37.5
QL08p011155 Quercus lobata HOM05D004888 ORTHO05D005792 5.1e-06 55.8 104 37.5
Duzib213G0117 Durio zibethinus HOM05D004888 ORTHO05D005792 6.7e-06 55.5 105 33.3
Mapoly0043s0001 Marchantia polymorpha HOM05D004888 ORTHO05D005792 6.7e-06 55.5 105 38.1
Sed0003457 Sechium edule HOM05D004888 ORTHO05D005792 6.7e-06 55.5 105 39.0
Rhsim06G0216300 Rhododendron simsii HOM05D004888 ORTHO05D005792 8.7e-06 55.1 105 35.2


User provided reference genes

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