Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.7G186800 Prunus persica HOM05D005976 ORTHO05D007149 0.0e+00 2307.7 1164 100.0
MD15G1228100 Malus domestica HOM05D005976 ORTHO05D007149 0.0e+00 2059.3 1201 87.0
RcHm_v2.0_Chr2g0096791 Rosa chinensis HOM05D005976 ORTHO05D007149 0.0e+00 1917.9 1193 82.5
FvH4_1g10000 Fragaria vesca HOM05D005976 ORTHO05D007149 0.0e+00 1901.3 1195 81.4
FAN19G1634 Fragaria x ananassa HOM05D005976 ORTHO05D007149 0.0e+00 1899.8 1200 81.0
FAN26G2461 Fragaria x ananassa HOM05D005976 ORTHO05D007149 0.0e+00 1899.0 1199 81.0
FAN28G0094 Fragaria x ananassa HOM05D005976 ORTHO05D007149 0.0e+00 1885.2 1192 80.8
FAN23G1414 Fragaria x ananassa HOM05D005976 ORTHO05D007149 0.0e+00 1867.4 1199 80.1
QL10p048872 Quercus lobata HOM05D005976 ORTHO05D007149 0.0e+00 1671.8 1197 71.1
Haze_03641 Corylus avellana HOM05D005976 ORTHO05D007149 0.0e+00 1663.3 1204 71.1
Cfa007111 Carpinus fangiana HOM05D005976 ORTHO05D007149 0.0e+00 1645.9 1204 70.1
Dinv40218 Davidia involucrata HOM05D005976 ORTHO05D007149 0.0e+00 1633.2 1198 69.4
Atru.chr3.58 Acer truncatum HOM05D005976 ORTHO05D007149 0.0e+00 1627.8 1209 69.6
TAR381G0142 Trochodendron aralioides HOM05D005976 ORTHO05D007149 0.0e+00 1588.2 1198 66.9
Potri.011G144700 Populus trichocarpa HOM05D005976 ORTHO05D007149 0.0e+00 1564.3 1193 66.1
COL.COLO4_25046 Corchorus olitorius HOM05D005976 ORTHO05D007149 0.0e+00 1558.5 1198 67.0
Thecc.01G002100 Theobroma cacao HOM05D005976 ORTHO05D007149 0.0e+00 1547.7 1198 66.9
Hma1.2p1_0085F.1_g044370 Hydrangea macrophylla HOM05D005976 ORTHO05D007149 0.0e+00 1547.3 1182 66.8
Sabra11G0129800 Salix brachista HOM05D005976 ORTHO05D007149 0.0e+00 1546.2 1201 65.6
Duzib147G1500 Durio zibethinus HOM05D005976 ORTHO05D007149 0.0e+00 1539.2 1198 66.2
Gorai.001G200200 Gossypium raimondii HOM05D005976 ORTHO05D007149 0.0e+00 1535.0 1199 65.8
Eucgr.I02203 Eucalyptus grandis HOM05D005976 ORTHO05D007149 0.0e+00 1533.1 1197 64.9
Gohir.D07G179000 Gossypium hirsutum HOM05D005976 ORTHO05D007149 0.0e+00 1530.0 1199 65.6
TWI73G0718 Tripterygium wilfordii HOM05D005976 ORTHO05D007149 0.0e+00 1529.2 1198 65.2
Actinidia28755 Actinidia chinensis HOM05D005976 ORTHO05D007149 0.0e+00 1527.3 1181 65.8
Gohir.A07G172300 Gossypium hirsutum HOM05D005976 ORTHO05D007149 0.0e+00 1525.8 1192 65.4
Ca_22438_v3 Cicer arietinum L. HOM05D005976 ORTHO05D007149 0.0e+00 1513.4 1200 63.2
Sopen02g026940 Solanum pennellii HOM05D005976 ORTHO05D007149 0.0e+00 1512.7 1201 63.7
Glyma.16G112900 Glycine max HOM05D005976 ORTHO05D007149 0.0e+00 1511.9 1199 62.8
Solyc02g082280.3 Solanum lycopersicum HOM05D005976 ORTHO05D007149 0.0e+00 1505.0 1201 63.4
PGSC0003DMG402013639 Solanum tuberosum HOM05D005976 ORTHO05D007149 0.0e+00 1505.0 1201 63.4
Phvul.003G271600 Phaseolus vulgaris HOM05D005976 ORTHO05D007149 0.0e+00 1501.1 1197 62.7
Psat4g106360 Pisum sativum HOM05D005976 ORTHO05D007149 0.0e+00 1499.6 1201 63.2
Medtr8g072710 Medicago truncatula HOM05D005976 ORTHO05D007149 0.0e+00 1499.2 1206 62.2
TPR.G27924 Trifolium pratense HOM05D005976 ORTHO05D007149 0.0e+00 1498.8 1215 62.1
Glyma.09G196100 Glycine max HOM05D005976 ORTHO05D007149 0.0e+00 1493.4 1203 62.9
VMungo0251G2412 Vigna mungo HOM05D005976 ORTHO05D007149 0.0e+00 1492.6 1197 62.8
Nitab4.5_0000855g0090 Nicotiana tabacum HOM05D005976 ORTHO05D007149 0.0e+00 1491.9 1200 63.3
Nitab4.5_0011596g0010 Nicotiana tabacum HOM05D005976 ORTHO05D007149 0.0e+00 1488.4 1200 63.1
MELO3C007982.2 Cucumis melo HOM05D005976 ORTHO05D007149 0.0e+00 1479.2 1184 63.3
PGR119G1871 Punica granatum HOM05D005976 ORTHO05D007149 0.0e+00 1479.2 1201 63.8
Lalb_Chr16g0391711 Lupinus albus HOM05D005976 ORTHO05D007149 0.0e+00 1478.4 1197 62.0
CiPaw.06G032800 Carya illinoinensis HOM05D005976 ORTHO05D007149 0.0e+00 1476.8 1105 68.8
Ciclev10026942m.g Citrus clementina HOM05D005976 ORTHO05D007149 0.0e+00 1476.5 1204 64.1
CAN.G1428.10 Capsicum annuum HOM05D005976 ORTHO05D007149 0.0e+00 1472.2 1201 62.5
Rhsim08G0025900 Rhododendron simsii HOM05D005976 ORTHO05D007149 0.0e+00 1471.1 1195 63.0
Aqoxy6G02993 Aquilegia oxysepala HOM05D005976 ORTHO05D007149 0.0e+00 1468.4 1189 62.7
Lj4g0003913 Lotus japonicus HOM05D005976 ORTHO05D007149 0.0e+00 1466.1 1200 62.8
CsaV3_6G047940 Cucumis sativus L. HOM05D005976 ORTHO05D007149 0.0e+00 1465.7 1184 63.1
Peaxi162Scf00677g00223 Petunia axillaris HOM05D005976 ORTHO05D007149 0.0e+00 1465.3 1181 63.3
Manes.02G116600 Manihot esculenta HOM05D005976 ORTHO05D007149 0.0e+00 1455.7 1079 68.3
vmacro18477 Vaccinium macrocarpon HOM05D005976 ORTHO05D007149 0.0e+00 1453.0 1214 61.5
Cc07_g12200 Coffea canephora HOM05D005976 ORTHO05D007149 0.0e+00 1451.4 1194 62.0
DCAR_014120 Daucus carota HOM05D005976 ORTHO05D007149 0.0e+00 1449.9 1187 62.8
PSO675G7053 Papaver somniferum HOM05D005976 ORTHO05D007149 0.0e+00 1448.3 1196 63.0
Sc03g0004130 Simmondsia chinensis HOM05D005976 ORTHO05D007149 0.0e+00 1438.7 1195 61.1
GSVIVG01026446001 Vitis vinifera HOM05D005976 ORTHO05D007149 0.0e+00 1436.8 1053 68.7
arahy.Tifrunner.gnm1.ann1.2S25M9 Arachis hypogaea HOM05D005976 ORTHO05D007149 0.0e+00 1429.1 1198 59.9
arahy.Tifrunner.gnm1.ann1.8BHC3E Arachis hypogaea HOM05D005976 ORTHO05D007149 0.0e+00 1428.3 1198 60.1
MSTRG.18885 Avicennia marina HOM05D005976 ORTHO05D007149 0.0e+00 1419.4 1202 61.1
EL10Ac6g15029 Beta vulgaris HOM05D005976 ORTHO05D007149 0.0e+00 1410.6 1184 60.3
THA.LOC104819155 Tarenaya hassleriana HOM05D005976 ORTHO05D007149 0.0e+00 1392.9 1197 60.1
AUR62018030 Chenopodium quinoa HOM05D005976 ORTHO05D007149 0.0e+00 1392.5 1183 59.8
Aa31LG1G14470 Aethionema arabicum HOM05D005976 ORTHO05D007149 0.0e+00 1389.8 1190 60.4
CARHR281820 Cardamine hirsuta HOM05D005976 ORTHO05D007149 0.0e+00 1381.7 1191 60.3
AUR62003719 Chenopodium quinoa HOM05D005976 ORTHO05D007149 0.0e+00 1381.3 1157 60.5
MBI04_g31209_MAGBIO Magnolia biondii HOM05D005976 ORTHO05D007149 0.0e+00 1378.6 1164 61.0
AT5G65950 Arabidopsis thaliana HOM05D005976 ORTHO05D007149 0.0e+00 1373.6 1190 59.9
Thhalv10003539m.g Eutrema salsugineum HOM05D005976 ORTHO05D007149 0.0e+00 1369.8 1190 60.5
ClCG01G020980 Citrullus lanatus HOM05D005976 ORTHO05D007149 0.0e+00 1367.8 1164 60.4
AL8G45690 Arabidopsis lyrata HOM05D005976 ORTHO05D007149 0.0e+00 1360.5 1190 59.7
HanXRQChr09g0259071 Helianthus annuus HOM05D005976 ORTHO05D007149 0.0e+00 1358.2 1185 59.7
Carub.0008s2857 Capsella rubella HOM05D005976 ORTHO05D007149 0.0e+00 1355.5 1194 59.5
Sp2g30740 Schrenkiella parvula HOM05D005976 ORTHO05D007149 0.0e+00 1355.1 1195 59.2
SalBow2G0432 Salvia bowleyana HOM05D005976 ORTHO05D007149 0.0e+00 1347.8 1219 57.3
BolC3t21644H Brassica oleracea HOM05D005976 ORTHO05D007149 0.0e+00 1343.2 1195 58.7
Hund19685 Selenicereus undatus HOM05D005976 ORTHO05D007149 0.0e+00 1341.3 1323 53.7
A08p00020 Brassica napus HOM05D005976 ORTHO05D007149 0.0e+00 1339.7 1198 57.9
Ah.02g123200 Amaranthus hybridus HOM05D005976 ORTHO05D007149 0.0e+00 1332.8 1159 58.5
Hma1.2p1_0085F.1_g044380 Hydrangea macrophylla HOM05D005976 ORTHO05D007149 0.0e+00 1314.7 1037 65.6
Nn6g31621 Nelumbo nucifera HOM05D005976 ORTHO05D007149 0.0e+00 1313.5 1068 62.9
SGA_v2.0_scaffold6G03353 Striga asiatica HOM05D005976 ORTHO05D007149 0.0e+00 1313.1 1200 57.7
ECA232G3572 Erigeron canadensis HOM05D005976 ORTHO05D007149 0.0e+00 1308.5 1192 57.9
Migut.D02574 Erythranthe guttata HOM05D005976 ORTHO05D007149 0.0e+00 1306.2 1154 59.1
Sed0007865 Sechium edule HOM05D005976 ORTHO05D007149 0.0e+00 1273.1 1052 62.4
CDE06G1894 Ceratophyllum demersum HOM05D005976 ORTHO05D007149 0.0e+00 1271.9 1183 56.6
ATR0605G043 Amborella trichopoda HOM05D005976 ORTHO05D007149 0.0e+00 1267.7 1189 55.1
Sed0007938 Sechium edule HOM05D005976 ORTHO05D007149 0.0e+00 1256.9 1051 60.9
Lsat_1_v5_gn_8_114080 Lactuca sativa HOM05D005976 ORTHO05D007149 0.0e+00 1255.4 1182 56.9
unitig_746.g26634 Utricularia gibba HOM05D005976 ORTHO05D007149 0.0e+00 1236.1 1214 53.9
Oeu021989.1 Olea europaea HOM05D005976 ORTHO05D007149 0.0e+00 1222.2 1191 56.3
Zm00001eb252650 Zea mays HOM05D005976 ORTHO05D007149 0.0e+00 1215.3 1183 53.9
SEGI_34852 Sequoiadendron giganteum HOM05D005976 ORTHO05D007149 4.0e-311 1071.6 1223 47.7
Cpa.g.sc365.8 Carica papaya HOM05D005976 ORTHO05D007149 6.5e-296 1021.1 775 66.6
BcaNung06215 Brassica carinata HOM05D005976 ORTHO05D007149 3.2e-295 1018.8 1043 53.0
Potri.001G457201 Populus trichocarpa HOM05D005976 ORTHO05D007149 4.4e-252 875.5 841 56.7
Mapoly0077s0054 Marchantia polymorpha HOM05D005976 ORTHO05D007149 3.6e-238 829.3 1214 40.1
Lj4A240G31 Lonicera japonica HOM05D005976 ORTHO05D007149 7.3e-231 805.1 699 61.4
BraA08t32059Z Brassica rapa HOM05D005976 ORTHO05D007149 2.2e-227 793.5 748 56.4
Mapoly0075s0041 Marchantia polymorpha HOM05D005976 ORTHO05D007149 6.0e-225 785.4 1202 38.9
Pp3c17_22570 Physcomitrium patens HOM05D005976 ORTHO05D007149 2.5e-223 780.0 1213 38.3
Migut.D02599 Erythranthe guttata HOM05D005976 ORTHO05D007149 4.7e-222 775.8 736 57.3
FAN23G1168 Fragaria x ananassa HOM05D005976 ORTHO05D007149 1.1e-221 774.6 518 77.8
HPP92_022739 Vanilla planifolia HOM05D005976 ORTHO05D007149 2.2e-219 766.9 717 53.8
Os02g0714500 Oryza sativa ssp. japonica HOM05D005976 ORTHO05D007149 3.1e-197 693.3 704 52.8
SHI19208 Sapria himalayana HOM05D005976 ORTHO05D007149 9.0e-189 665.2 790 47.0
Lj4C240T7 Lonicera japonica HOM05D005976 ORTHO05D007149 4.6e-177 626.3 455 67.0
Hund03584 Selenicereus undatus HOM05D005976 ORTHO05D007149 9.7e-159 565.5 440 62.0
AagrBONN_evm.TU.Sc2ySwM_117.3206 Anthoceros agrestis HOM05D005976 ORTHO05D007149 1.4e-157 561.6 777 41.6
CBR_g24120 Chara braunii HOM05D005976 ORTHO05D007149 4.0e-136 490.3 1364 27.6
Zm00001eb188960 Zea mays HOM05D002434 ORTHO05D007149 3.6e-121 440.7 452 52.9
Zm00001eb055070 Zea mays HOM05D005976 ORTHO05D007149 8.6e-115 419.5 431 52.0
Cpa.g.sc6.347 Carica papaya HOM05D005976 ORTHO05D007149 3.5e-108 397.5 457 51.4
SMO144G0134 Selaginella moellendorffii HOM05D005976 ORTHO05D007149 4.3e-106 390.6 683 34.7
Cc04_g09170 Coffea canephora HOM05D005976 ORTHO05D007149 1.1e-93 349.4 365 50.1
Zm00001eb339980 Zea mays HOM05D005976 ORTHO05D007149 1.1e-72 279.6 306 50.0
arahy.Tifrunner.gnm1.ann1.SH4Y7X Arachis hypogaea HOM05D005976 ORTHO05D007149 1.6e-65 255.8 330 44.8
Zm00001eb425900 Zea mays HOM05D005976 ORTHO05D007149 1.0e-54 219.9 226 53.1
MCO16G661 Micromonas commoda HOM05D005976 ORTHO05D007149 5.9e-47 194.1 1278 21.7
Manes.07G108212 Manihot esculenta HOM05D005976 ORTHO05D007149 2.4e-40 172.2 173 57.8
Hma1.2p1_0085F.1_g044360 Hydrangea macrophylla HOM05D005976 ORTHO05D007149 1.6e-36 159.5 118 65.3
Hund03583 Selenicereus undatus HOM05D005976 ORTHO05D007149 1.8e-35 156.0 118 64.4
Cre17.g729700 Chlamydomonas reinhardtii HOM05D005976 ORTHO05D007149 4.7e-20 104.8 369 27.9
PRCOL_00004193 Prasinoderma coloniale HOM05D005976 ORTHO05D007149 8.6e-14 84.0 1185 20.2
Oeu041882.1 Olea europaea HOM05D005976 ORTHO05D007149 2.3e-11 75.9 131 36.6
CDE05G1182 Ceratophyllum demersum HOM05D004029 ORTHO05D004613 1.3e-06 60.1 250 24.4
CSS0001233 Camellia sinensis var. sinensis HOM05D004029 ORTHO05D004613 8.6e-06 57.4 237 26.2
CSS0038840 Camellia sinensis var. sinensis HOM05D004029 ORTHO05D004613 8.6e-06 57.4 237 26.2


User provided reference genes

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