Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.7G183600 Prunus persica HOM05D004420 ORTHO05D005048 2.7e-195 685.3 379 100.0
FvH4_1g10260 Fragaria vesca HOM05D004420 ORTHO05D005048 7.3e-148 527.7 379 77.8
FAN19G0089 Fragaria x ananassa HOM05D004420 ORTHO05D005048 2.1e-147 526.2 379 77.6
FAN26G2737 Fragaria x ananassa HOM05D004420 ORTHO05D005048 2.8e-147 525.8 379 77.6
RcHm_v2.0_Chr2g0097081 Rosa chinensis HOM05D004420 ORTHO05D005048 8.1e-147 524.2 381 78.2
FAN23G0043 Fragaria x ananassa HOM05D004420 ORTHO05D005048 3.5e-142 508.8 379 75.7
MD02G1114600 Malus domestica HOM05D004420 ORTHO05D005048 2.5e-140 502.7 385 76.4
MD15G1230400 Malus domestica HOM05D004420 ORTHO05D005048 1.3e-136 490.3 383 76.0
Cfa007085 Carpinus fangiana HOM05D004420 ORTHO05D005048 1.6e-123 446.8 394 67.0
CiPaw.08G182000 Carya illinoinensis HOM05D004420 ORTHO05D005048 6.9e-122 441.4 381 65.1
QL06p053029 Quercus lobata HOM05D004420 ORTHO05D005048 6.2e-115 418.3 394 66.5
Potri.007G063000 Populus trichocarpa HOM05D004420 ORTHO05D005048 4.6e-110 402.1 391 62.7
Potri.005G102000 Populus trichocarpa HOM05D004420 ORTHO05D005048 2.8e-107 392.9 386 61.1
Manes.01G155700 Manihot esculenta HOM05D004420 ORTHO05D005048 6.3e-107 391.7 400 61.2
Thecc.01G004900 Theobroma cacao HOM05D004420 ORTHO05D005048 2.4e-106 389.8 385 62.3
Duzib147G0341 Durio zibethinus HOM05D004420 ORTHO05D005048 9.0e-106 387.9 381 61.7
Sabra05G0084400 Salix brachista HOM05D004420 ORTHO05D005048 2.7e-102 376.3 389 59.4
Dinv40192 Davidia involucrata HOM05D004420 ORTHO05D005048 3.3e-100 369.4 384 55.7
Cpa.g.sc6.366 Carica papaya HOM05D004420 ORTHO05D005048 1.7e-99 367.1 381 57.0
TWI09G0210 Tripterygium wilfordii HOM05D004420 ORTHO05D005048 2.8e-99 366.3 381 55.4
Phvul.003G270300 Phaseolus vulgaris HOM05D004420 ORTHO05D005048 4.8e-99 365.5 375 56.8
Phvul.002G117000 Phaseolus vulgaris HOM05D004420 ORTHO05D005048 6.3e-99 365.2 380 57.4
CiPaw.07G002200 Carya illinoinensis HOM05D004420 ORTHO05D005048 1.4e-98 364.0 333 67.0
Glyma.01G158300 Glycine max HOM05D004420 ORTHO05D005048 1.8e-98 363.6 381 57.5
CsaV3_3G000180 Cucumis sativus L. HOM05D004420 ORTHO05D005048 2.4e-98 363.2 381 58.0
CANSAT25G3726 Cannabis sativa HOM05D004420 ORTHO05D005048 4.1e-98 362.5 390 58.2
Manes.02G114400 Manihot esculenta HOM05D004420 ORTHO05D005048 2.0e-97 360.1 397 57.7
arahy.Tifrunner.gnm1.ann1.7Y7MXI Arachis hypogaea HOM05D004420 ORTHO05D005048 2.6e-97 359.8 379 54.9
arahy.Tifrunner.gnm1.ann1.PTZ9GF Arachis hypogaea HOM05D004420 ORTHO05D005048 2.6e-97 359.8 379 54.9
MELO3C013712.2 Cucumis melo HOM05D004420 ORTHO05D005048 3.4e-97 359.4 381 57.2
CSS0016949 Camellia sinensis var. sinensis HOM05D004420 ORTHO05D005048 1.3e-96 357.5 385 55.8
CSS0044881 Camellia sinensis var. sinensis HOM05D004420 ORTHO05D005048 1.3e-96 357.5 385 55.8
Ciclev10025852m.g Citrus clementina HOM05D004420 ORTHO05D005048 3.8e-96 355.9 387 55.8
VMungo0251G1478 Vigna mungo HOM05D004420 ORTHO05D005048 8.5e-96 354.8 375 56.5
Ca_02853_v3 Cicer arietinum L. HOM05D004420 ORTHO05D005048 4.2e-95 352.4 379 54.9
Duzib264G0151 Durio zibethinus HOM05D004420 ORTHO05D005048 9.4e-95 351.3 385 59.2
Gohir.D03G001500 Gossypium hirsutum HOM05D004420 ORTHO05D005048 9.4e-95 351.3 390 58.2
COL.COLO4_22555 Corchorus olitorius HOM05D004420 ORTHO05D005048 6.1e-94 348.6 356 60.7
Gorai.003G001900 Gossypium raimondii HOM05D004420 ORTHO05D005048 1.0e-93 347.8 392 57.7
VMungo1215G0928 Vigna mungo HOM05D004420 ORTHO05D005048 1.4e-93 347.4 381 55.1
Eucgr.I02220 Eucalyptus grandis HOM05D004420 ORTHO05D005048 2.3e-93 346.7 381 55.1
Gohir.A02G178300 Gossypium hirsutum HOM05D004420 ORTHO05D005048 8.8e-93 344.7 394 57.1
ClCG10G000160 Citrullus lanatus HOM05D004420 ORTHO05D005048 1.1e-92 344.4 394 54.3
Lalb_Chr05g0214821 Lupinus albus HOM05D004420 ORTHO05D005048 5.7e-92 342.0 379 55.9
CSS0013805 Camellia sinensis var. sinensis HOM05D004420 ORTHO05D005048 7.4e-92 341.7 385 53.5
Dinv40193 Davidia involucrata HOM05D004420 ORTHO05D005048 6.3e-91 338.6 384 53.6
Psat4g103680 Pisum sativum HOM05D004420 ORTHO05D005048 6.9e-90 335.1 389 53.7
Actinidia17355 Actinidia chinensis HOM05D004420 ORTHO05D005048 1.2e-89 334.3 384 51.8
Glyma.11G086400 Glycine max HOM05D004420 ORTHO05D005048 1.2e-89 334.3 393 54.2
Hma1.2p1_0300F.1_g117950 Hydrangea macrophylla HOM05D004420 ORTHO05D005048 7.7e-89 331.6 386 52.3
Medtr8g073305 Medicago truncatula HOM05D004420 ORTHO05D005048 1.3e-88 330.9 382 52.9
Lj2g0010108 Lotus japonicus HOM05D004420 ORTHO05D005048 2.9e-88 329.7 381 57.5
TWI53G1718 Tripterygium wilfordii HOM05D004420 ORTHO05D005048 2.9e-88 329.7 360 54.2
Sed0027819 Sechium edule HOM05D004420 ORTHO05D005048 8.5e-88 328.2 382 53.1
Atru.chr3.127 Acer truncatum HOM05D004420 ORTHO05D005048 3.2e-87 326.2 387 54.3
TPR.G13730 Trifolium pratense HOM05D004420 ORTHO05D005048 2.1e-86 323.6 383 52.7
Actinidia22893 Actinidia chinensis HOM05D004420 ORTHO05D005048 3.1e-82 309.7 384 50.0
Glyma.09G197900 Glycine max HOM05D004420 ORTHO05D005048 5.3e-82 308.9 356 53.9
Actinidia35683 Actinidia chinensis HOM05D004420 ORTHO05D005048 7.0e-82 308.5 384 51.6
Lalb_Chr09g0324761 Lupinus albus HOM05D004420 ORTHO05D005048 2.9e-80 303.1 378 51.1
Hma1.2p1_0085F.1_g044630 Hydrangea macrophylla HOM05D004420 ORTHO05D005048 3.8e-80 302.8 387 49.4
Rhsim10G0195100 Rhododendron simsii HOM05D004420 ORTHO05D005048 6.5e-80 302.0 384 48.7
Lalb_Chr09g0334351 Lupinus albus HOM05D004420 ORTHO05D005048 1.5e-79 300.8 380 50.5
PGR119G1834 Punica granatum HOM05D004420 ORTHO05D005048 1.5e-79 300.8 387 51.9
Glyma.16G111400 Glycine max HOM05D004420 ORTHO05D005048 8.0e-78 295.0 353 52.7
Oeu043391.2 Olea europaea HOM05D004420 ORTHO05D005048 2.3e-77 293.5 398 47.2
Actinidia28747 Actinidia chinensis HOM05D004420 ORTHO05D005048 3.0e-77 293.1 380 50.5
Oeu045734.2 Olea europaea HOM05D004420 ORTHO05D005048 4.0e-77 292.7 397 48.9
Cc07_g11920 Coffea canephora HOM05D004420 ORTHO05D005048 5.2e-77 292.4 398 48.0
Gorai.001G199300 Gossypium raimondii HOM05D004420 ORTHO05D005048 2.0e-76 290.4 344 55.5
Gohir.D07G178200 Gossypium hirsutum HOM05D004420 ORTHO05D005048 7.5e-76 288.5 344 55.2
Gohir.A07G173800 Gossypium hirsutum HOM05D004420 ORTHO05D005048 5.3e-74 282.3 344 54.1
vmacro20627 Vaccinium macrocarpon HOM05D004420 ORTHO05D005048 4.5e-73 279.3 372 47.0
Lj2P500T27 Lonicera japonica HOM05D004420 ORTHO05D005048 8.5e-72 275.0 384 47.4
Nitab4.5_0004608g0040 Nicotiana tabacum HOM05D004420 ORTHO05D005048 1.5e-71 274.2 402 45.0
Ah.02g123000 Amaranthus hybridus HOM05D000464 ORTHO05D005048 5.5e-71 272.3 385 48.6
Lalb_Chr16g0380091 Lupinus albus HOM05D004420 ORTHO05D005048 5.5e-71 272.3 376 47.1
Lj4g0016332 Lotus japonicus HOM05D004420 ORTHO05D005048 2.1e-70 270.4 376 47.1
EL10Ac6g15050 Beta vulgaris HOM05D004420 ORTHO05D005048 4.0e-69 266.2 386 47.9
GSVIVG01022291001 Vitis vinifera HOM05D004420 ORTHO05D005048 1.5e-68 264.2 382 47.1
Ah.03g142860 Amaranthus hybridus HOM05D004420 ORTHO05D005048 2.6e-68 263.5 389 48.6
Nitab4.5_0001467g0050 Nicotiana tabacum HOM05D004420 ORTHO05D005048 6.3e-67 258.8 400 43.5
AUR62002052 Chenopodium quinoa HOM05D004420 ORTHO05D005048 1.4e-66 257.7 382 43.7
AUR62003743 Chenopodium quinoa HOM05D004420 ORTHO05D005048 4.1e-66 256.1 276 52.2
DCAR_014284 Daucus carota HOM05D004420 ORTHO05D005048 4.1e-66 256.1 379 45.4
DCAR_014308 Daucus carota HOM05D004420 ORTHO05D005048 4.1e-66 256.1 379 45.4
CAN.G1238.15 Capsicum annuum HOM05D004420 ORTHO05D005048 1.2e-65 254.6 393 44.0
Sopen02g027250 Solanum pennellii HOM05D004420 ORTHO05D005048 1.2e-65 254.6 399 44.1
PGSC0003DMG400001515 Solanum tuberosum HOM05D004420 ORTHO05D005048 5.9e-65 252.3 399 44.4
TAR376G0940 Trochodendron aralioides HOM05D004420 ORTHO05D005048 6.5e-64 248.8 387 45.7
Sc07g0001390 Simmondsia chinensis HOM05D004420 ORTHO05D005048 1.5e-63 247.7 384 44.0
Sabra07G0052400 Salix brachista HOM05D004420 ORTHO05D005048 5.5e-63 245.7 335 51.0
Lj4P237T30 Lonicera japonica HOM05D004420 ORTHO05D005048 9.5e-63 245.0 391 49.4
Peaxi162Scf00121g00249 Petunia axillaris HOM05D004420 ORTHO05D005048 5.2e-61 239.2 400 43.8
Migut.F01091 Erythranthe guttata HOM05D004420 ORTHO05D005048 1.5e-60 237.7 382 43.2
THA.LOC104819714 Tarenaya hassleriana HOM05D004420 ORTHO05D005048 1.7e-59 234.2 392 46.4
Aa31LG8G14840 Aethionema arabicum HOM05D004420 ORTHO05D005048 1.7e-56 224.2 385 46.2
TAR625G1485 Trochodendron aralioides HOM05D004420 ORTHO05D005048 1.6e-54 217.6 381 41.2
THA.LOC104807425 Tarenaya hassleriana HOM05D004420 ORTHO05D005048 1.0e-53 214.9 384 44.5
Nn6g31686 Nelumbo nucifera HOM05D004420 ORTHO05D005048 1.2e-52 211.5 321 46.7
TAR381G0338 Trochodendron aralioides HOM05D004420 ORTHO05D005048 9.8e-52 208.4 335 45.1
SalBow2G0301 Salvia bowleyana HOM05D004420 ORTHO05D005048 1.4e-50 204.5 389 41.9
SalBow2G0742 Salvia bowleyana HOM05D004420 ORTHO05D005048 1.4e-50 204.5 389 41.9
Carub.0003s3163 Capsella rubella HOM05D004420 ORTHO05D005048 3.5e-49 199.9 386 42.0
AL3G50510 Arabidopsis lyrata HOM05D004420 ORTHO05D005048 1.7e-48 197.6 383 41.5
Carub.0007s0482 Capsella rubella HOM05D004420 ORTHO05D005048 6.6e-48 195.7 384 42.4
Aqoxy6G01610 Aquilegia oxysepala HOM05D004420 ORTHO05D005048 1.5e-47 194.5 387 40.3
AT4G35510 Arabidopsis thaliana HOM05D004420 ORTHO05D005048 6.2e-46 189.1 384 42.7
Solyc03g032100.2 Solanum lycopersicum HOM05D004420 ORTHO05D005048 6.2e-46 189.1 320 43.1
Sopen03g005950 Solanum pennellii HOM05D004420 ORTHO05D005048 3.4e-44 183.3 320 42.5
AL7G15660 Arabidopsis lyrata HOM05D004420 ORTHO05D005048 2.2e-43 180.6 384 42.4
PSO761G0558 Papaver somniferum HOM05D004420 ORTHO05D005048 1.4e-42 177.9 348 40.5
PSO210G4741 Papaver somniferum HOM05D004420 ORTHO05D005048 3.2e-42 176.8 349 40.4
unitig_46.g18801 Utricularia gibba HOM05D004420 ORTHO05D005048 9.2e-42 175.3 381 35.7
CARHR243840 Cardamine hirsuta HOM05D004420 ORTHO05D005048 2.7e-41 173.7 382 38.5
ECA246G3765 Erigeron canadensis HOM05D004420 ORTHO05D005048 1.0e-40 171.8 387 42.4
SGA_v2.0_scaffold10G05298 Striga asiatica HOM05D004420 ORTHO05D005048 2.3e-40 170.6 380 38.4
Migut.F00308 Erythranthe guttata HOM05D004420 ORTHO05D005048 3.0e-40 170.2 387 37.5
HanXRQChr16g0531901 Helianthus annuus HOM05D004420 ORTHO05D005048 3.9e-40 169.9 382 39.5
PGSC0003DMG400018682 Solanum tuberosum HOM05D004420 ORTHO05D005048 6.6e-40 169.1 319 40.1
HanXRQChr16g0531911 Helianthus annuus HOM05D004420 ORTHO05D005048 1.1e-39 168.3 382 39.3
CiPaw.13G121300 Carya illinoinensis HOM05D004420 ORTHO05D005048 3.3e-39 166.8 163 65.6
Sp3g30900 Schrenkiella parvula HOM05D004420 ORTHO05D005048 8.1e-38 162.2 336 45.2
SGA_v2.0_scaffold60G21098 Striga asiatica HOM05D004420 ORTHO05D005048 2.3e-37 160.6 323 40.6
Eucgr.J02539 Eucalyptus grandis HOM05D004420 ORTHO05D005048 2.6e-36 157.1 187 54.0
Thhalv10025668m.g Eutrema salsugineum HOM05D004420 ORTHO05D005048 4.4e-36 156.4 388 40.2
CAN.G354.13 Capsicum annuum HOM05D004420 ORTHO05D005048 2.4e-34 150.6 314 39.2
MBI08_g12255_MAGBIO Magnolia biondii HOM05D004420 ORTHO05D005048 4.6e-33 146.4 389 33.2
BcaC06g36286 Brassica carinata HOM05D004420 ORTHO05D005048 1.7e-32 144.4 311 41.5
Thhalv10022789m.g Eutrema salsugineum HOM05D004420 ORTHO05D005048 3.0e-32 143.7 322 44.1
C07p05740 Brassica napus HOM05D004420 ORTHO05D005048 8.6e-32 142.1 311 41.2
BcaB03g16523 Brassica carinata HOM05D004420 ORTHO05D005048 3.3e-31 140.2 323 42.4
Peaxi162Scf00580g00013 Petunia axillaris HOM05D004420 ORTHO05D005048 5.6e-31 139.4 222 45.5
Sp7g33290 Schrenkiella parvula HOM05D004420 ORTHO05D005048 1.2e-30 138.3 330 40.3
A06p33900 Brassica napus HOM05D004420 ORTHO05D005048 2.4e-29 134.0 309 41.1
BcaB08g34743 Brassica carinata HOM05D004420 ORTHO05D005048 3.1e-29 133.7 316 41.8
BolC3t18106H Brassica oleracea HOM05D004420 ORTHO05D005048 5.2e-29 132.9 313 43.5
BraA06t26325Z Brassica rapa HOM05D004420 ORTHO05D005048 1.5e-28 131.3 309 41.4
CDE05G3647 Ceratophyllum demersum HOM05D004420 ORTHO05D005048 2.0e-28 131.0 377 32.1
BcaC01g02911 Brassica carinata HOM05D004420 ORTHO05D005048 7.1e-26 122.5 313 41.9
C03p58480 Brassica napus HOM05D004420 ORTHO05D005048 7.1e-26 122.5 313 41.9
Lsat_1_v5_gn_8_112420 Lactuca sativa HOM05D004420 ORTHO05D005048 2.7e-25 120.6 377 35.0
unitig_52.g17736 Utricularia gibba HOM05D004420 ORTHO05D005048 8.7e-24 115.5 295 36.3
BcaNung03633 Brassica carinata HOM05D004420 ORTHO05D005048 1.9e-23 114.4 302 39.1
Lsat_1_v5_gn_3_67941 Lactuca sativa HOM05D004420 ORTHO05D005048 1.6e-22 111.3 231 42.4
CDE05G1602 Ceratophyllum demersum HOM05D001617 ORTHO05D008611 4.7e-22 109.8 319 33.5
AT2G17540 Arabidopsis thaliana HOM05D004420 ORTHO05D005048 6.2e-22 109.4 382 35.1
BraA07t28141Z Brassica rapa HOM05D004420 ORTHO05D005048 2.4e-21 107.5 338 34.9
Solyc02g082570.3 Solanum lycopersicum HOM05D004420 ORTHO05D005048 5.3e-21 106.3 162 45.7
BolC7t40973H Brassica oleracea HOM05D004420 ORTHO05D005048 9.0e-21 105.5 311 36.0
A01p03090 Brassica napus HOM05D004420 ORTHO05D005048 5.8e-20 102.8 303 37.6
BraA01t00293Z Brassica rapa HOM05D004420 ORTHO05D005048 2.9e-19 100.5 303 38.3
C07p61200 Brassica napus HOM05D004420 ORTHO05D005048 1.9e-18 97.8 317 37.9
BolC1t00331H Brassica oleracea HOM05D004420 ORTHO05D005048 5.4e-18 96.3 208 45.2
BolC7t46546H Brassica oleracea HOM05D004420 ORTHO05D005048 7.1e-18 95.9 317 37.9
CARHR107720 Cardamine hirsuta HOM05D004420 ORTHO05D005048 8.7e-16 89.0 381 34.6
BraA03t15434Z Brassica rapa HOM05D004420 ORTHO05D005048 5.6e-15 86.3 377 35.0
THA.LOC104804296 Tarenaya hassleriana HOM05D004420 ORTHO05D005048 1.3e-14 85.1 125 44.8
BcaNung00585 Brassica carinata HOM05D004420 ORTHO05D005048 6.2e-14 82.8 209 43.1
C01p03440 Brassica napus HOM05D004420 ORTHO05D005048 6.2e-14 82.8 209 43.1
A03p63630 Brassica napus HOM05D004420 ORTHO05D005048 5.3e-13 79.7 377 34.2
Thhalv10022985m.g Eutrema salsugineum HOM05D004420 ORTHO05D005048 2.0e-12 77.8 139 54.0
A07p03430 Brassica napus HOM05D004420 ORTHO05D005048 1.1e-07 62.0 228 33.8
Os06g0728500 Oryza sativa ssp. japonica HOM05D060560 ORTHO05D005048 8.1e-06 55.8 399 23.8


User provided reference genes

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