Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.7G183400 Prunus persica HOM05D001617 ORTHO05D008611 1.2e-98 363.2 184 100.0
MD02G1114800 Malus domestica HOM05D001617 ORTHO05D008611 1.6e-87 326.2 185 90.3
MD15G1230700 Malus domestica HOM05D001617 ORTHO05D008611 2.0e-87 325.9 184 88.0
FAN19G1097 Fragaria x ananassa HOM05D001617 ORTHO05D002495 1.9e-77 292.7 179 82.7
FvH4_1g10271 Fragaria vesca HOM05D001617 ORTHO05D008611 5.6e-77 291.2 179 82.7
RcHm_v2.0_Chr2g0097101 Rosa chinensis HOM05D001617 ORTHO05D008611 1.6e-76 289.7 183 81.4
Haze_03607 Corylus avellana HOM05D001617 ORTHO05D008611 4.1e-72 275.0 185 75.1
FAN23G1150 Fragaria x ananassa HOM05D001617 ORTHO05D002495 1.7e-70 269.6 215 67.9
QL06p053003 Quercus lobata HOM05D001617 ORTHO05D008611 1.2e-66 256.9 180 72.8
Potri.018G026700 Populus trichocarpa HOM05D001617 ORTHO05D008611 9.9e-66 253.8 176 69.9
Sabra06G0199600 Salix brachista HOM05D001617 ORTHO05D008611 6.6e-62 241.1 177 67.2
Manes.03G014200 Manihot esculenta HOM05D001617 ORTHO05D008611 4.3e-61 238.4 180 67.8
Lalb_Chr05g0214811 Lupinus albus HOM05D001617 ORTHO05D008611 1.3e-60 236.9 179 65.9
Psat4g142640 Pisum sativum HOM05D001617 ORTHO05D008611 2.1e-60 236.1 179 65.9
Ca_24984_v3 Cicer arietinum L. HOM05D001617 ORTHO05D008611 2.8e-60 235.7 176 68.2
TPR.G24692 Trifolium pratense HOM05D001617 ORTHO05D008611 1.1e-59 233.8 176 67.0
Glyma.01G158500 Glycine max HOM05D001617 ORTHO05D008611 3.1e-59 232.3 182 63.2
Medtr7g006210 Medicago truncatula HOM05D001617 ORTHO05D008611 6.9e-59 231.1 171 67.3
TPR.G27884 Trifolium pratense HOM05D001617 ORTHO05D008611 6.9e-59 231.1 176 66.5
Phvul.002G116800 Phaseolus vulgaris HOM05D001617 ORTHO05D008611 3.4e-58 228.8 171 66.7
CiPaw.08G181900 Carya illinoinensis HOM05D001617 ORTHO05D008611 4.4e-58 228.4 177 67.8
Glyma.11G086100 Glycine max HOM05D001617 ORTHO05D008611 5.8e-58 228.0 182 63.7
TAR625G0652 Trochodendron aralioides HOM05D001617 ORTHO05D008611 9.9e-58 227.3 179 68.7
arahy.Tifrunner.gnm1.ann1.00REGV Arachis hypogaea HOM05D001617 ORTHO05D008611 3.8e-57 225.3 175 64.6
arahy.Tifrunner.gnm1.ann1.P3NXZX Arachis hypogaea HOM05D001617 ORTHO05D008611 3.8e-57 225.3 175 64.6
Nn5g30995 Nelumbo nucifera HOM05D001617 ORTHO05D008611 4.9e-57 224.9 181 66.3
Lalb_Chr16g0380051 Lupinus albus HOM05D001617 ORTHO05D008611 5.4e-56 221.5 179 61.5
Dinv40191 Davidia involucrata HOM05D001617 ORTHO05D008611 9.3e-56 220.7 169 65.1
Actinidia17356 Actinidia chinensis HOM05D001617 ORTHO05D008611 2.7e-55 219.2 165 67.9
Actinidia22895 Actinidia chinensis HOM05D001617 ORTHO05D008611 6.0e-55 218.0 166 65.7
Duzib147G0359 Durio zibethinus HOM05D001617 ORTHO05D008611 3.0e-54 215.7 184 61.4
Hma1.2p1_0300F.1_g117970 Hydrangea macrophylla HOM05D001617 ORTHO05D008611 5.1e-54 214.9 184 63.0
Atru.chr3.130 Acer truncatum HOM05D001617 ORTHO05D008611 6.6e-54 214.5 182 58.8
CSS0049801 Camellia sinensis var. sinensis HOM05D001617 ORTHO05D008611 6.6e-54 214.5 166 65.1
Lj2g0016890 Lotus japonicus HOM05D001617 ORTHO05D008611 6.6e-54 214.5 171 64.9
Sed0024019 Sechium edule HOM05D001617 ORTHO05D008611 7.3e-53 211.1 171 64.3
CSS0040657 Camellia sinensis var. sinensis HOM05D001617 ORTHO05D008611 9.6e-53 210.7 166 65.1
Potri.006G255301 Populus trichocarpa HOM05D001617 ORTHO05D008611 9.6e-53 210.7 176 60.2
Sc07g0001380 Simmondsia chinensis HOM05D001617 ORTHO05D008611 9.6e-53 210.7 166 64.5
Ciclev10026581m.g Citrus clementina HOM05D001617 ORTHO05D008611 1.3e-52 210.3 187 58.3
CsaV3_3G000210 Cucumis sativus L. HOM05D001617 ORTHO05D008611 2.1e-52 209.5 171 63.2
Eucgr.I02221 Eucalyptus grandis HOM05D001617 ORTHO05D008611 2.1e-52 209.5 180 60.0
Thecc.01G005100 Theobroma cacao HOM05D001617 ORTHO05D008611 6.9e-51 204.5 182 57.7
AL7G15630 Arabidopsis lyrata HOM05D001617 ORTHO05D008611 1.1e-48 197.2 190 55.3
AT4G35530 Arabidopsis thaliana HOM05D001617 ORTHO05D008611 1.9e-48 196.4 185 54.1
PGR119G0287 Punica granatum HOM05D001617 ORTHO05D008611 2.4e-48 196.1 182 55.5
Rhsim10G0195300 Rhododendron simsii HOM05D001617 ORTHO05D008611 3.2e-48 195.7 168 63.1
HanXRQChr03g0061381 Helianthus annuus HOM05D001617 ORTHO05D008611 1.8e-46 189.9 180 56.7
Medtr8g446540 Medicago truncatula HOM05D001617 ORTHO05D008611 2.3e-46 189.5 148 64.9
Solyc02g038814.1 Solanum lycopersicum HOM05D001617 ORTHO05D008611 3.0e-46 189.1 163 58.3
Sopen02g012580 Solanum pennellii HOM05D001617 ORTHO05D008611 3.0e-46 189.1 163 58.3
AUR62003746 Chenopodium quinoa HOM05D001617 ORTHO05D008611 3.9e-46 188.7 166 56.0
Carub.0007s0479 Capsella rubella HOM05D001617 ORTHO05D008611 8.7e-46 187.6 186 53.2
Gorai.003G002100 Gossypium raimondii HOM05D001617 ORTHO05D008611 1.5e-45 186.8 173 57.2
C07p61220 Brassica napus HOM05D001617 ORTHO05D008611 2.5e-45 186.0 190 53.2
BolC7t46548H Brassica oleracea HOM05D001617 ORTHO05D008611 2.5e-45 186.0 190 53.2
A01p03080 Brassica napus HOM05D001617 ORTHO05D008611 4.3e-45 185.3 188 52.1
Gohir.A02G178000 Gossypium hirsutum HOM05D001617 ORTHO05D008611 4.3e-45 185.3 173 57.2
Gohir.D03G001800 Gossypium hirsutum HOM05D001617 ORTHO05D008611 7.4e-45 184.5 173 56.6
BraA01t00292Z Brassica rapa HOM05D001617 ORTHO05D008611 1.3e-44 183.7 188 51.6
AUR62002049 Chenopodium quinoa HOM05D001617 ORTHO05D008611 1.6e-44 183.3 174 53.4
Thhalv10026286m.g Eutrema salsugineum HOM05D001617 ORTHO05D008611 1.6e-44 183.3 185 52.4
Nitab4.5_0001365g0060 Nicotiana tabacum HOM05D001617 ORTHO05D008611 1.6e-44 183.3 168 57.1
PSO210G2591 Papaver somniferum HOM05D001617 ORTHO05D008611 2.8e-44 182.6 183 51.4
THA.LOC104819716 Tarenaya hassleriana HOM05D001617 ORTHO05D008611 2.8e-44 182.6 169 53.8
Aa31LG6G12490 Aethionema arabicum HOM05D001617 ORTHO05D008611 4.8e-44 181.8 171 54.4
Sp7g33310 Schrenkiella parvula HOM05D001617 ORTHO05D008611 8.1e-44 181.0 189 51.3
Migut.H02499 Erythranthe guttata HOM05D001617 ORTHO05D008611 1.1e-43 180.6 175 56.0
Aqoxy6G01611 Aquilegia oxysepala HOM05D001617 ORTHO05D008611 1.8e-43 179.9 167 55.7
Lsat_1_v5_gn_7_41980 Lactuca sativa HOM05D001617 ORTHO05D008611 1.8e-43 179.9 180 52.8
ClCG10G000190 Citrullus lanatus HOM05D001617 ORTHO05D008611 3.1e-43 179.1 186 53.2
GSVIVG01013391001 Vitis vinifera HOM05D001617 ORTHO05D008611 3.1e-43 179.1 174 54.6
ECA240G2496 Erigeron canadensis HOM05D001617 ORTHO05D008611 6.9e-43 177.9 179 53.1
Peaxi162Scf00580g00110 Petunia axillaris HOM05D001617 ORTHO05D008611 1.2e-42 177.2 162 55.6
Nitab4.5_0000467g0050 Nicotiana tabacum HOM05D001617 ORTHO05D008611 3.4e-42 175.6 185 51.9
A03p63650 Brassica napus HOM05D001617 ORTHO05D008611 7.6e-42 174.5 181 50.8
BraA03t15436Z Brassica rapa HOM05D001617 ORTHO05D008611 7.6e-42 174.5 181 50.8
VMungo1215G1547 Vigna mungo HOM05D004017 ORTHO05D004612 1.0e-41 174.1 116 74.1
BcaNung03634 Brassica carinata HOM05D001617 ORTHO05D008611 2.2e-41 172.9 181 50.8
Cc07_g11900 Coffea canephora HOM05D001617 ORTHO05D008611 2.2e-41 172.9 171 55.0
TWI09G0535 Tripterygium wilfordii HOM05D001617 ORTHO05D008611 2.9e-41 172.6 154 58.4
PGSC0003DMG400017488 Solanum tuberosum HOM05D001617 ORTHO05D008611 3.8e-41 172.2 185 50.8
PSO761G0409 Papaver somniferum HOM05D001617 ORTHO05D008611 4.2e-40 168.7 188 47.3
ATR0807G073 Amborella trichopoda HOM05D001617 ORTHO05D008611 2.7e-39 166.0 175 50.3
SGA_v2.0_scaffold280G46856 Striga asiatica HOM05D001617 ORTHO05D008611 4.6e-39 165.2 172 55.8
CANSAT25G0226 Cannabis sativa HOM05D001617 ORTHO05D008611 1.8e-38 163.3 174 52.3
Manes.03G014750 Manihot esculenta HOM05D001617 ORTHO05D008611 9.6e-37 157.5 176 52.8
TWI73G0916 Tripterygium wilfordii HOM05D001617 ORTHO05D008611 9.6e-37 157.5 173 52.6
COL.COLO4_22553 Corchorus olitorius HOM05D001617 ORTHO05D008611 1.3e-36 157.1 181 50.3
MELO3C013716.2 Cucumis melo HOM05D001617 ORTHO05D008611 8.2e-36 154.5 86 83.7
CARHR243860 Cardamine hirsuta HOM05D001617 ORTHO05D008611 2.4e-35 152.9 130 56.9
Hund03599 Selenicereus undatus HOM05D001617 ORTHO05D008611 2.4e-35 152.9 171 47.4
FAN26G0309 Fragaria x ananassa HOM05D001617 ORTHO05D002495 9.0e-35 151.0 87 83.9
Lj2g0001157 Lotus japonicus HOM05D001617 ORTHO05D008611 1.5e-34 150.2 111 70.3
HPP92_001135 Vanilla planifolia HOM05D001617 ORTHO05D008611 5.8e-34 148.3 174 47.1
SalBow8G0576 Salvia bowleyana HOM05D001617 ORTHO05D008611 2.2e-33 146.4 158 51.9
BcaNung00584 Brassica carinata HOM05D001617 ORTHO05D008611 5.0e-33 145.2 187 46.0
Os05g0165400 Oryza sativa ssp. japonica HOM05D001617 ORTHO05D008611 1.1e-32 144.1 166 48.2
EL10Ac6g15051 Beta vulgaris HOM05D001617 ORTHO05D008611 4.2e-32 142.1 218 42.7
Zm00001eb123330 Zea mays HOM05D001617 ORTHO05D008611 3.5e-31 139.0 160 47.5
QL02p015100 Quercus lobata HOM05D001617 ORTHO05D008611 4.6e-31 138.7 156 48.1
CDE05G1602 Ceratophyllum demersum HOM05D001617 ORTHO05D008611 1.8e-27 126.7 148 45.9
Haze_22828 Corylus avellana HOM05D006218 ORTHO05D007338 3.1e-27 125.9 89 65.2
SEGI_30027 Sequoiadendron giganteum HOM05D001617 ORTHO05D008611 4.1e-27 125.6 171 42.1
C01p03430 Brassica napus HOM05D001617 ORTHO05D008611 1.2e-26 124.0 207 38.2
BolC1t00330H Brassica oleracea HOM05D001617 ORTHO05D008611 1.2e-26 124.0 207 38.2
SEGI_12529 Sequoiadendron giganteum HOM05D001617 ORTHO05D008611 2.6e-26 122.9 94 61.7
TAR381G0965 Trochodendron aralioides HOM05D001617 ORTHO05D008611 2.2e-25 119.8 80 72.5
QL02p015033 Quercus lobata HOM05D001617 ORTHO05D008611 5.5e-24 115.2 155 44.5
Pp3c25_310 Physcomitrium patens HOM05D001617 ORTHO05D008611 1.5e-21 107.1 104 52.9
SHI18558 Sapria himalayana HOM05D000291 ORTHO05D001358 2.2e-20 103.2 145 42.8
unitig_46.g18791 Utricularia gibba HOM05D001617 ORTHO05D008611 3.7e-20 102.4 179 38.0
Mapoly0064s0006 Marchantia polymorpha HOM05D001617 ORTHO05D008611 4.8e-20 102.1 169 37.9
AagrBONN_evm.TU.Sc2ySwM_368.1506 Anthoceros agrestis HOM05D001617 ORTHO05D008611 6.3e-20 101.7 142 42.3
Os01g0166400 Oryza sativa ssp. japonica HOM05D001617 ORTHO05D008611 9.1e-19 97.8 81 54.3
FAN28G0538 Fragaria x ananassa HOM05D001617 ORTHO05D002495 1.5e-18 97.1 89 60.7
arahy.Tifrunner.gnm1.ann1.JF0LYH Arachis hypogaea HOM05D001617 ORTHO05D008611 6.1e-15 85.1 89 52.8
Medtr7g005770 Medicago truncatula HOM05D001617 ORTHO05D008611 6.1e-15 85.1 71 62.0
CBR_g38242 Chara braunii HOM05D001617 ORTHO05D008611 2.4e-11 73.2 134 29.9
Zm00001eb345970 Zea mays HOM05D001617 ORTHO05D008611 1.8e-06 57.0 98 35.7


User provided reference genes

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