Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.7G182100 Prunus persica HOM05D004607 ORTHO05D005836 1.0e-94 350.1 185 100.0
MD02G1117000 Malus domestica HOM05D004607 ORTHO05D005836 4.3e-77 291.6 180 83.9
MD02G1116800 Malus domestica HOM05D004607 ORTHO05D005836 7.3e-77 290.8 180 83.3
RcHm_v2.0_Chr2g0097211 Rosa chinensis HOM05D004607 ORTHO05D005836 5.3e-75 284.6 180 83.3
FAN28G2666 Fragaria x ananassa HOM05D004607 ORTHO05D005836 4.6e-71 271.6 179 80.4
FvH4_1g10350 Fragaria vesca HOM05D004607 ORTHO05D005836 6.9e-67 257.7 175 78.9
CiPaw.08G181500 Carya illinoinensis HOM05D004607 ORTHO05D005836 3.8e-65 251.9 180 75.6
FAN26G2101 Fragaria x ananassa HOM05D004607 ORTHO05D005836 5.1e-62 241.5 206 66.5
CANSAT80G1685 Cannabis sativa HOM05D004607 ORTHO05D005836 1.9e-61 239.6 184 68.5
CANSAT80G2088 Cannabis sativa HOM05D004607 ORTHO05D005836 1.9e-61 239.6 184 68.5
Potri.005G101300 Populus trichocarpa HOM05D004607 ORTHO05D005836 2.5e-61 239.2 172 73.8
CiPaw.07G003100 Carya illinoinensis HOM05D004607 ORTHO05D005836 4.8e-60 235.0 174 71.3
Cpa.g.c27001.3 Carica papaya HOM05D004607 ORTHO05D005836 1.1e-59 233.8 179 70.4
Hma1.2p1_0300F.1_g118020 Hydrangea macrophylla HOM05D004607 ORTHO05D005836 1.8e-59 233.0 174 69.5
TWI09G0436 Tripterygium wilfordii HOM05D004607 ORTHO05D005836 4.0e-59 231.9 169 71.6
Dinv40187 Davidia involucrata HOM05D004607 ORTHO05D005836 2.6e-58 229.2 171 71.3
CSS0013050 Camellia sinensis var. sinensis HOM05D004607 ORTHO05D005836 5.8e-58 228.0 173 67.6
TWI73G0051 Tripterygium wilfordii HOM05D004607 ORTHO05D005836 1.7e-57 226.5 171 71.3
CSS0035278 Camellia sinensis var. sinensis HOM05D004607 ORTHO05D005836 3.8e-57 225.3 171 67.3
Actinidia17362 Actinidia chinensis HOM05D004607 ORTHO05D005836 1.1e-56 223.8 171 67.3
Dinv08165 Davidia involucrata HOM05D004607 ORTHO05D005836 1.9e-56 223.0 171 69.0
FvH4_1g10370 Fragaria vesca HOM05D004607 ORTHO05D005836 3.5e-55 218.8 190 65.8
Actinidia22900 Actinidia chinensis HOM05D004607 ORTHO05D005836 1.0e-54 217.2 173 66.5
PGR042G1958 Punica granatum HOM05D004607 ORTHO05D005836 1.3e-54 216.9 175 65.7
Solyc02g082710.3 Solanum lycopersicum HOM05D004607 ORTHO05D005836 3.0e-54 215.7 175 66.9
Glyma.09G198400 Glycine max HOM05D004607 ORTHO05D005836 3.9e-54 215.3 172 65.1
Sopen02g027460 Solanum pennellii HOM05D004607 ORTHO05D005836 1.1e-53 213.8 175 66.3
Peaxi162Scf01051g00133 Petunia axillaris HOM05D004607 ORTHO05D005836 1.5e-53 213.4 178 66.3
GSVIVG01026644001 Vitis vinifera HOM05D004607 ORTHO05D005836 2.5e-53 212.6 166 66.9
Carub.0007s2507 Capsella rubella HOM05D004607 ORTHO05D005836 1.3e-52 210.3 175 64.0
Migut.C01149 Erythranthe guttata HOM05D004607 ORTHO05D005836 1.3e-52 210.3 172 64.5
Cc07_g11810 Coffea canephora HOM05D004607 ORTHO05D005836 2.1e-52 209.5 173 64.2
Migut.K01195 Erythranthe guttata HOM05D004607 ORTHO05D005836 2.8e-52 209.1 172 63.4
Haze_04009 Corylus avellana HOM05D004607 ORTHO05D005836 3.7e-52 208.8 148 73.0
CsaV3_3G000280 Cucumis sativus L. HOM05D004607 ORTHO05D005836 3.7e-52 208.8 174 62.6
Haze_03657 Corylus avellana HOM05D004607 ORTHO05D005836 6.3e-52 208.0 153 71.9
Haze_03663 Corylus avellana HOM05D004607 ORTHO05D005836 6.3e-52 208.0 153 71.9
Nitab4.5_0011694g0010 Nicotiana tabacum HOM05D004607 ORTHO05D005836 8.2e-52 207.6 164 67.7
CARHR222820 Cardamine hirsuta HOM05D004607 ORTHO05D005836 1.1e-51 207.2 175 62.9
AL7G38550 Arabidopsis lyrata HOM05D004607 ORTHO05D005836 1.4e-51 206.8 175 64.0
BraA08t33239Z Brassica rapa HOM05D004607 ORTHO05D005836 2.4e-51 206.1 175 62.9
BolC8t48369H Brassica oleracea HOM05D004607 ORTHO05D005836 4.1e-51 205.3 175 62.3
Lj4g0003075 Lotus japonicus HOM05D004607 ORTHO05D005836 4.1e-51 205.3 169 62.7
Sp7g14990 Schrenkiella parvula HOM05D004607 ORTHO05D005836 6.9e-51 204.5 175 62.9
Thhalv10026376m.g Eutrema salsugineum HOM05D004607 ORTHO05D005836 9.0e-51 204.1 167 64.1
Lalb_Chr05g0229661 Lupinus albus HOM05D004607 ORTHO05D005836 9.0e-51 204.1 180 62.2
Aa31LG2G12510 Aethionema arabicum HOM05D004607 ORTHO05D005836 1.2e-50 203.8 175 60.6
Eucgr.I00568 Eucalyptus grandis HOM05D004607 ORTHO05D005836 1.5e-50 203.4 174 65.5
Medtr8g073600 Medicago truncatula HOM05D004607 ORTHO05D005836 3.4e-50 202.2 169 62.1
CAN.G1238.9 Capsicum annuum HOM05D004607 ORTHO05D005836 5.9e-50 201.4 180 63.3
AT4G16444 Arabidopsis thaliana HOM05D004607 ORTHO05D005836 7.6e-50 201.1 175 62.3
Migut.G00971 Erythranthe guttata HOM05D004607 ORTHO05D005836 7.6e-50 201.1 172 61.6
Gorai.010G212400 Gossypium raimondii HOM05D004607 ORTHO05D005836 7.6e-50 201.1 163 65.0
MD15G1231800 Malus domestica HOM05D004607 ORTHO05D005836 1.7e-49 199.9 280 46.1
Thecc.01G005800 Theobroma cacao HOM05D004607 ORTHO05D005836 2.2e-49 199.5 157 70.7
Ca_02856_v3 Cicer arietinum L. HOM05D004607 ORTHO05D005836 2.9e-49 199.1 169 60.4
Nitab4.5_0000467g0060 Nicotiana tabacum HOM05D004607 ORTHO05D005836 3.8e-49 198.7 180 61.7
Lsat_1_v5_gn_3_68061 Lactuca sativa HOM05D004607 ORTHO05D005836 1.1e-48 197.2 171 59.6
BolC7t45311H Brassica oleracea HOM05D004607 ORTHO05D005836 7.2e-48 194.5 171 60.2
THA.LOC104819160 Tarenaya hassleriana HOM05D004607 ORTHO05D005836 7.2e-48 194.5 175 58.9
BcaC07g37988 Brassica carinata HOM05D004607 ORTHO05D005836 1.2e-47 193.7 176 60.8
Sopen02g012590 Solanum pennellii HOM05D004607 ORTHO05D005836 2.7e-47 192.6 167 61.1
A03p49830 Brassica napus HOM05D004607 ORTHO05D005836 3.6e-47 192.2 173 60.1
A08p12190 Brassica napus HOM05D004607 ORTHO05D005836 3.6e-47 192.2 200 55.0
BraA03t14078Z Brassica rapa HOM05D004607 ORTHO05D005836 3.6e-47 192.2 173 60.1
Nn2g14487 Nelumbo nucifera HOM05D004607 ORTHO05D005836 3.6e-47 192.2 168 60.1
Phvul.003G269900 Phaseolus vulgaris HOM05D004607 ORTHO05D005836 3.6e-47 192.2 172 60.5
Solyc02g038815.1 Solanum lycopersicum HOM05D004607 ORTHO05D005836 4.6e-47 191.8 167 60.5
C07p47890 Brassica napus HOM05D004607 ORTHO05D005836 6.1e-47 191.4 172 60.5
Lalb_Chr09g0324751 Lupinus albus HOM05D004607 ORTHO05D005836 1.8e-46 189.9 178 57.9
HanXRQChr16g0531851 Helianthus annuus HOM05D004607 ORTHO05D005836 8.7e-46 187.6 168 58.3
Nitab4.5_0000702g0180 Nicotiana tabacum HOM05D004607 ORTHO05D005836 1.1e-45 187.2 159 64.2
MBI11_g22240_MAGBIO Magnolia biondii HOM05D004607 ORTHO05D005836 1.9e-45 186.4 175 58.3
THA.LOC104826422 Tarenaya hassleriana HOM05D004607 ORTHO05D005836 1.9e-45 186.4 182 58.8
Duzib187G1597 Durio zibethinus HOM05D004607 ORTHO05D005836 2.5e-45 186.0 163 62.6
PGSC0003DMG400001520 Solanum tuberosum HOM05D004607 ORTHO05D005836 2.5e-45 186.0 155 65.2
vmacro23502 Vaccinium macrocarpon HOM05D004607 ORTHO05D005836 5.7e-45 184.9 152 63.8
Ciclev10016602m.g Citrus clementina HOM05D004607 ORTHO05D005836 4.8e-44 181.8 159 65.4
MSTRG.1461 Avicennia marina HOM05D004607 ORTHO05D005836 6.3e-44 181.4 172 59.9
Lalb_Chr05g0214781 Lupinus albus HOM05D004607 ORTHO05D005836 3.1e-43 179.1 178 56.2
Sed0016741 Sechium edule HOM05D004607 ORTHO05D005836 9.1e-43 177.6 128 71.1
Sabra05G0083700 Salix brachista HOM05D004607 ORTHO05D005836 1.5e-42 176.8 140 69.3
Migut.M00637 Erythranthe guttata HOM05D004607 ORTHO05D005836 2.6e-42 176.0 128 68.8
Psat0s2561g0240 Pisum sativum HOM05D004607 ORTHO05D005836 7.7e-42 174.5 171 55.0
TAR628G0874 Trochodendron aralioides HOM05D004607 ORTHO05D005836 7.7e-42 174.5 147 60.5
ClCG10G000250 Citrullus lanatus HOM05D004607 ORTHO05D005836 2.2e-41 172.9 153 60.1
Psat4g104720 Pisum sativum HOM05D004607 ORTHO05D026060 2.9e-41 172.6 158 58.9
Glyma.01G158900 Glycine max HOM05D004607 ORTHO05D005836 4.2e-40 168.7 173 54.3
TPR.G33861 Trifolium pratense HOM05D004607 ORTHO05D005836 4.2e-40 168.7 171 55.0
Duzib264G0749 Durio zibethinus HOM05D004607 ORTHO05D005836 7.2e-40 167.9 140 65.0
unitig_26.g9912 Utricularia gibba HOM05D004607 ORTHO05D005836 1.2e-39 167.2 174 51.7
Glyma.11G085750 Glycine max HOM05D004607 ORTHO05D005836 1.6e-39 166.8 174 54.0
BcaNung00194 Brassica carinata HOM05D004607 ORTHO05D005836 2.1e-39 166.4 171 55.6
ATR0807G168 Amborella trichopoda HOM05D004607 ORTHO05D005836 3.6e-39 165.6 172 52.3
arahy.Tifrunner.gnm1.ann1.322DBQ Arachis hypogaea HOM05D004607 ORTHO05D005836 3.6e-39 165.6 178 49.4
arahy.Tifrunner.gnm1.ann1.WAU4HL Arachis hypogaea HOM05D004607 ORTHO05D005836 3.6e-39 165.6 178 49.4
Lj2g0013322 Lotus japonicus HOM05D004607 ORTHO05D005836 6.1e-39 164.9 179 50.8
HanXRQChr09g0259831 Helianthus annuus HOM05D004607 ORTHO05D005836 7.9e-39 164.5 173 52.6
Migut.N00197 Erythranthe guttata HOM05D004607 ORTHO05D005836 1.0e-38 164.1 152 58.6
Aqoxy5G01013 Aquilegia oxysepala HOM05D004607 ORTHO05D005836 1.8e-38 163.3 157 59.2
Phvul.002G116550 Phaseolus vulgaris HOM05D004607 ORTHO05D005836 3.9e-38 162.2 167 51.5
ECA246G3880 Erigeron canadensis HOM05D004607 ORTHO05D005836 1.1e-37 160.6 164 52.4
PSO210G1290 Papaver somniferum HOM05D004607 ORTHO05D005836 1.1e-37 160.6 172 54.7
CDE05G3414 Ceratophyllum demersum HOM05D004607 ORTHO05D005836 2.0e-37 159.8 128 64.1
PSO761G0125 Papaver somniferum HOM05D004607 ORTHO05D005836 2.6e-37 159.5 172 54.1
Sc16g0000240 Simmondsia chinensis HOM05D004607 ORTHO05D005836 3.3e-37 159.1 158 57.0
COL.COLO4_13415 Corchorus olitorius HOM05D004607 ORTHO05D005836 5.7e-37 158.3 143 64.3
TPR.G21990 Trifolium pratense HOM05D004607 ORTHO05D005836 5.7e-37 158.3 176 49.4
SGA_v2.0_scaffold52G18984 Striga asiatica HOM05D004607 ORTHO05D005836 2.8e-36 156.0 138 59.4
SalBow7G0705 Salvia bowleyana HOM05D004607 ORTHO05D005836 6.3e-36 154.8 222 45.5
SalBow7G2290 Salvia bowleyana HOM05D004607 ORTHO05D005836 8.2e-36 154.5 215 47.4
EL10Ac3g05419 Beta vulgaris HOM05D004607 ORTHO05D005836 1.1e-35 154.1 146 57.5
Atru.chr8.743 Acer truncatum HOM05D004607 ORTHO05D005836 1.4e-35 153.7 130 63.1
Os06g0198700 Oryza sativa ssp. japonica HOM05D004607 ORTHO05D005836 9.1e-35 151.0 163 50.9
CDE05G1839 Ceratophyllum demersum HOM05D001594 ORTHO05D006997 1.2e-34 150.6 192 48.4
QL06p052929 Quercus lobata HOM05D004607 ORTHO05D005836 1.2e-34 150.6 90 81.1
SalBow7G4137 Salvia bowleyana HOM05D004607 ORTHO05D005836 2.0e-34 149.8 223 45.7
Manes.14G160966 Manihot esculenta HOM05D004607 ORTHO05D005836 3.4e-34 149.1 179 50.3
Zm00001eb320900 Zea mays HOM05D004607 ORTHO05D005836 5.9e-34 148.3 167 49.7
Lsat_1_v5_gn_8_112021 Lactuca sativa HOM05D000005 ORTHO05D000012 1.3e-33 147.1 157 54.8
AUR62031422 Chenopodium quinoa HOM05D004607 ORTHO05D005836 3.8e-33 145.6 145 57.2
Nitab4.5_0001365g0040 Nicotiana tabacum HOM05D004607 ORTHO05D005836 9.4e-32 141.0 157 54.1
AUR62021120 Chenopodium quinoa HOM05D004607 ORTHO05D005836 1.6e-31 140.2 154 53.9
HPP92_002453 Vanilla planifolia HOM05D004607 ORTHO05D005836 6.1e-31 138.3 155 51.0
Zm00001eb373950 Zea mays HOM05D004607 ORTHO05D005836 3.9e-30 135.6 161 47.2
CSS0045229 Camellia sinensis var. sinensis HOM05D004607 ORTHO05D005836 1.1e-29 134.0 171 46.8
Rhsim10G0196300 Rhododendron simsii HOM05D004607 ORTHO05D005836 3.3e-29 132.5 144 54.9
Hund00045 Selenicereus undatus HOM05D004607 ORTHO05D005836 3.5e-26 122.5 158 48.7
unitig_749.g13934 Utricularia gibba HOM05D004607 ORTHO05D005836 4.5e-26 122.1 143 47.6
SGA_v2.0_scaffold24G10477 Striga asiatica HOM05D004607 ORTHO05D005836 5.0e-25 118.6 171 39.8
TAR376G0723 Trochodendron aralioides HOM05D004607 ORTHO05D005836 8.5e-25 117.9 105 61.9
ECA232G4775 Erigeron canadensis HOM05D004607 ORTHO05D005836 3.2e-24 115.9 146 45.9
Peaxi162Scf00580g00027 Petunia axillaris HOM05D004607 ORTHO05D005836 4.2e-24 115.5 167 44.3
CAN.G328.18 Capsicum annuum HOM05D004607 ORTHO05D005836 1.2e-23 114.0 91 64.8
PGSC0003DMG400017476 Solanum tuberosum HOM05D004607 ORTHO05D005836 1.2e-23 114.0 82 64.6
QL06p052933 Quercus lobata HOM05D004607 ORTHO05D005836 3.7e-20 102.4 90 67.8
FAN23G1441 Fragaria x ananassa HOM05D004607 ORTHO05D005836 1.4e-19 100.5 84 67.9
Duzib147G0723 Durio zibethinus HOM05D004607 ORTHO05D005836 1.6e-18 97.1 88 61.4
Gohir.D06G180900 Gossypium hirsutum HOM05D004607 ORTHO05D005836 6.5e-17 91.7 77 64.9
MELO3C013722.2 Cucumis melo HOM05D004607 ORTHO05D005836 1.9e-16 90.1 84 58.3
AagrBONN_evm.TU.Sc2ySwM_362.230 Anthoceros agrestis HOM05D004607 ORTHO05D005836 3.2e-16 89.4 138 42.8
Gohir.A06G172006 Gossypium hirsutum HOM05D004607 ORTHO05D005836 5.5e-16 88.6 77 62.3
Rhsim10G0196100 Rhododendron simsii HOM05D004607 ORTHO05D005836 8.0e-15 84.7 106 49.1
Mapoly0007s0238 Marchantia polymorpha HOM05D004607 ORTHO05D005836 1.4e-14 84.0 162 33.3
Glyma.16G116500 Glycine max HOM05D004607 ORTHO05D005836 1.8e-14 83.6 89 56.2
Pp3c7_8860 Physcomitrium patens HOM05D004607 ORTHO05D005836 1.5e-13 80.5 184 34.2
VMungo1215G0163 Vigna mungo HOM05D004607 ORTHO05D005836 5.7e-13 78.6 106 50.9
Cpa.g.sc117.83 Carica papaya HOM05D004607 ORTHO05D005836 8.3e-12 74.7 66 60.6
FAN19G1486 Fragaria x ananassa HOM05D004607 ORTHO05D005836 5.0e-09 65.5 78 57.7
CBR_g18647 Chara braunii HOM05D004607 ORTHO05D005836 4.7e-07 58.9 165 29.1
VMungo0251G1148 Vigna mungo HOM05D004607 ORTHO05D005836 8.0e-07 58.2 42 73.8
VMungo0703G0001 Vigna mungo HOM05D004607 ORTHO05D005836 1.4e-06 57.4 40 77.5


User provided reference genes

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