Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.7G175000 Prunus persica HOM05D003374 ORTHO05D009470 1.8e-82 309.3 164 100.0
MD15G1237400 Malus domestica HOM05D003374 ORTHO05D009470 4.4e-57 224.9 166 77.1
Haze_03703 Corylus avellana HOM05D003374 ORTHO05D009415 3.8e-53 211.8 175 65.7
Cfa007029 Carpinus fangiana HOM05D003374 ORTHO05D009470 5.0e-53 211.5 145 71.0
CiPaw.08G125800 Carya illinoinensis HOM05D003374 ORTHO05D009470 2.5e-52 209.1 172 66.9
Thecc.01G011500 Theobroma cacao HOM05D003374 ORTHO05D009470 8.0e-51 204.1 145 71.0
FAN28G2426 Fragaria x ananassa HOM05D003374 ORTHO05D009470 1.4e-50 203.4 144 74.3
RcHm_v2.0_Chr2g0098351 Rosa chinensis HOM05D003374 ORTHO05D009470 1.8e-50 203.0 177 66.1
FAN23G1041 Fragaria x ananassa HOM05D003374 ORTHO05D009470 4.0e-50 201.8 144 73.6
FAN26G1101 Fragaria x ananassa HOM05D003374 ORTHO05D009470 5.2e-50 201.4 144 75.0
FvH4_1g11080 Fragaria vesca HOM05D003374 ORTHO05D009470 6.8e-50 201.1 144 73.6
QL06p052079 Quercus lobata HOM05D003374 ORTHO05D009470 6.8e-50 201.1 171 63.7
Manes.02G110400 Manihot esculenta HOM05D003374 ORTHO05D009470 4.9e-48 194.9 152 70.4
Duzib145G0002 Durio zibethinus HOM05D003374 ORTHO05D009470 8.3e-48 194.1 145 69.7
Ciclev10026638m.g Citrus clementina HOM05D003374 ORTHO05D009470 1.8e-47 193.0 145 68.3
Atru.chr3.907 Acer truncatum HOM05D003374 ORTHO05D009470 9.2e-47 190.7 145 67.6
Gohir.D03G005500 Gossypium hirsutum HOM05D003374 ORTHO05D009470 1.2e-46 190.3 159 65.4
Gorai.003G005900 Gossypium raimondii HOM05D003374 ORTHO05D009470 1.2e-46 190.3 159 65.4
FAN19G0939 Fragaria x ananassa HOM05D003374 ORTHO05D009470 5.9e-46 188.0 157 66.9
TWI73G0454 Tripterygium wilfordii HOM05D003374 ORTHO05D009470 1.3e-45 186.8 161 63.4
Potri.005G107800 Populus trichocarpa HOM05D003374 ORTHO05D009470 1.1e-44 183.7 146 67.1
Eucgr.I02305 Eucalyptus grandis HOM05D003374 ORTHO05D009470 4.3e-44 181.8 168 67.9
Gohir.A02G174300 Gossypium hirsutum HOM05D003374 ORTHO05D009470 7.3e-44 181.0 163 62.0
Sabra05G0088300 Salix brachista HOM05D003374 ORTHO05D009470 7.3e-44 181.0 146 65.8
Cpa.g.sc6.313 Carica papaya HOM05D003374 ORTHO05D009470 1.4e-42 176.8 166 60.2
PGR102G2171 Punica granatum HOM05D003374 ORTHO05D009470 1.2e-41 173.7 146 61.6
Rhsim10G0205800 Rhododendron simsii HOM05D003374 ORTHO05D009470 3.4e-41 172.2 149 64.4
Phvul.002G104800 Phaseolus vulgaris HOM05D003374 ORTHO05D009470 7.5e-41 171.0 147 62.6
Medtr5g022970 Medicago truncatula HOM05D003374 ORTHO05D009470 3.7e-40 168.7 151 64.9
vmacro20496 Vaccinium macrocarpon HOM05D003374 ORTHO05D009470 3.7e-40 168.7 147 61.9
CANSAT01G1253 Cannabis sativa HOM05D003374 ORTHO05D009470 6.4e-40 167.9 149 63.8
Ca_24942_v3 Cicer arietinum L. HOM05D003374 ORTHO05D009470 1.4e-39 166.8 150 61.3
Lj2g0014457 Lotus japonicus HOM05D003374 ORTHO05D009470 1.6e-38 163.3 163 60.1
Glyma.11G080800 Glycine max HOM05D003374 ORTHO05D009470 4.6e-38 161.8 172 58.7
Dinv08548 Davidia involucrata HOM05D003374 ORTHO05D009470 7.8e-38 161.0 143 63.6
Lalb_Chr09g0321441 Lupinus albus HOM05D003374 ORTHO05D009470 5.0e-37 158.3 137 62.0
VMungo1215G1047 Vigna mungo HOM05D003374 ORTHO05D009470 6.6e-37 157.9 157 61.1
Hma1.2p1_0315F.1_g122600 Hydrangea macrophylla HOM05D003374 ORTHO05D009470 9.5e-36 154.1 145 58.6
Cc07_g11310 Coffea canephora HOM05D003374 ORTHO05D009470 1.2e-35 153.7 140 62.1
Cc08_g04880 Coffea canephora HOM05D003374 ORTHO05D009470 1.2e-35 153.7 140 62.1
Glyma.01G162500 Glycine max HOM05D003374 ORTHO05D009470 1.8e-34 149.8 158 54.4
Lalb_Chr05g0212181 Lupinus albus HOM05D003374 ORTHO05D009470 1.2e-33 147.1 149 57.0
CSS0026426 Camellia sinensis var. sinensis HOM05D003374 ORTHO05D009415 3.4e-33 145.6 152 57.9
Duzib147G0965 Durio zibethinus HOM05D003374 ORTHO05D009470 1.3e-32 143.7 117 65.8
TAR625G1139 Trochodendron aralioides HOM05D003374 ORTHO05D009470 1.7e-32 143.3 147 57.8
Thhalv10022897m.g Eutrema salsugineum HOM05D003374 ORTHO05D009470 1.1e-31 140.6 157 50.3
CARHR108000 Cardamine hirsuta HOM05D003374 ORTHO05D009470 5.4e-31 138.3 146 54.1
Sp3g31120 Schrenkiella parvula HOM05D003374 ORTHO05D009470 5.4e-31 138.3 146 54.1
Aa31LG8G14990 Aethionema arabicum HOM05D003374 ORTHO05D009470 1.2e-30 137.1 158 51.9
BcaB03g16544 Brassica carinata HOM05D003374 ORTHO05D009470 2.1e-30 136.3 146 53.4
MBI09_g46000_MAGBIO Magnolia biondii HOM05D003374 ORTHO05D009470 2.1e-30 136.3 144 54.2
BraA07t28128Z Brassica rapa HOM05D003374 ORTHO05D009470 2.7e-30 136.0 146 53.4
Potri.005G107900 Populus trichocarpa HOM05D003374 ORTHO05D009470 2.7e-30 136.0 121 63.6
THA.LOC104819731 Tarenaya hassleriana HOM05D003374 ORTHO05D009470 2.7e-30 136.0 171 49.1
PSO541G4788 Papaver somniferum HOM05D003374 ORTHO05D009470 3.5e-30 135.6 137 59.1
C07p05580 Brassica napus HOM05D003374 ORTHO05D009470 4.6e-30 135.2 146 53.4
BcaB08g34755 Brassica carinata HOM05D003374 ORTHO05D009470 1.7e-29 133.3 146 53.4
CDE05G3297 Ceratophyllum demersum HOM05D003374 ORTHO05D009470 1.7e-29 133.3 146 52.7
PSO675G4674 Papaver somniferum HOM05D003374 ORTHO05D009470 1.7e-29 133.3 137 58.4
BcaC06g36303 Brassica carinata HOM05D003374 ORTHO05D009470 2.3e-29 132.9 146 53.4
GSVIVG01005193001 Vitis vinifera HOM05D003374 ORTHO05D009470 3.0e-29 132.5 119 59.7
CDE05G2149 Ceratophyllum demersum HOM05D003374 ORTHO05D009470 3.9e-29 132.1 134 51.5
AT2G17710 Arabidopsis thaliana HOM05D003374 ORTHO05D009470 5.0e-29 131.7 144 51.4
Nitab4.5_0006892g0010 Nicotiana tabacum HOM05D003374 ORTHO05D009470 5.0e-29 131.7 140 54.3
AL3G50710 Arabidopsis lyrata HOM05D003374 ORTHO05D009470 6.6e-29 131.3 146 51.4
BcaC01g02894 Brassica carinata HOM05D003374 ORTHO05D009470 6.6e-29 131.3 146 52.1
C03p58640 Brassica napus HOM05D003374 ORTHO05D009470 6.6e-29 131.3 146 52.1
BolC3t18125H Brassica oleracea HOM05D003374 ORTHO05D009470 6.6e-29 131.3 146 52.1
Nitab4.5_0002105g0080 Nicotiana tabacum HOM05D003374 ORTHO05D009470 6.6e-29 131.3 140 55.0
BolC7t40958H Brassica oleracea HOM05D003374 ORTHO05D009415 1.5e-28 130.2 148 52.7
A06p33690 Brassica napus HOM05D003374 ORTHO05D009470 3.3e-28 129.0 146 52.1
BraA06t26303Z Brassica rapa HOM05D003374 ORTHO05D009470 3.3e-28 129.0 146 52.1
Carub.0003s3182 Capsella rubella HOM05D003374 ORTHO05D009470 5.6e-28 128.3 146 51.4
CAN.G890.28 Capsicum annuum HOM05D003374 ORTHO05D009470 1.6e-27 126.7 140 53.6
THA.LOC104804280 Tarenaya hassleriana HOM05D003374 ORTHO05D009470 6.2e-27 124.8 183 46.4
MSTRG.22233 Avicennia marina HOM05D003374 ORTHO05D009470 1.1e-26 124.0 121 52.1
Peaxi162Scf00328g00118 Petunia axillaris HOM05D003374 ORTHO05D009470 1.8e-26 123.2 138 55.1
PGSC0003DMG400003663 Solanum tuberosum HOM05D003374 ORTHO05D009470 8.9e-26 120.9 141 51.8
EL10Ac9g21336 Beta vulgaris HOM05D003374 ORTHO05D009470 1.2e-25 120.6 125 53.6
Sopen02g028160 Solanum pennellii HOM05D003374 ORTHO05D009470 4.4e-25 118.6 166 48.8
AUR62012999 Chenopodium quinoa HOM05D003374 ORTHO05D009470 1.9e-23 113.2 128 51.6
MSTRG.24362 Avicennia marina HOM05D003374 ORTHO05D009470 3.2e-23 112.5 124 49.2
Actinidia22937 Actinidia chinensis HOM05D003374 ORTHO05D009470 2.7e-22 109.4 118 58.5
Migut.N02761 Erythranthe guttata HOM05D003374 ORTHO05D009470 1.0e-21 107.5 132 45.5
Oeu022073.1 Olea europaea HOM05D003374 ORTHO05D009470 1.0e-21 107.5 157 45.2
COL.COLO4_22495 Corchorus olitorius HOM05D003374 ORTHO05D009470 6.6e-21 104.8 94 63.8
SalBow6G5967 Salvia bowleyana HOM05D003374 ORTHO05D009470 6.6e-21 104.8 104 52.9
Aqoxy6G01986 Aquilegia oxysepala HOM05D003374 ORTHO05D009470 8.6e-21 104.4 132 43.9
SalBow8G5385 Salvia bowleyana HOM05D003374 ORTHO05D009470 1.5e-20 103.6 104 52.9
TPR.G20269 Trifolium pratense HOM05D003374 ORTHO05D009470 7.3e-20 101.3 90 62.2
arahy.Tifrunner.gnm1.ann1.HG61QK Arachis hypogaea HOM05D003374 ORTHO05D009470 9.5e-20 100.9 99 57.6
arahy.Tifrunner.gnm1.ann1.YP763J Arachis hypogaea HOM05D003374 ORTHO05D009470 9.5e-20 100.9 99 57.6
Actinidia17405 Actinidia chinensis HOM05D000373 ORTHO05D001763 6.4e-16 88.2 114 57.0
A07p03300 Brassica napus HOM05D003374 ORTHO05D009415 4.2e-15 85.5 97 52.6
Sc18g0006270 Simmondsia chinensis HOM05D003374 ORTHO05D009470 5.4e-15 85.1 93 52.7
unitig_578.g16135 Utricularia gibba HOM05D003374 ORTHO05D009470 7.1e-15 84.7 115 40.9
Hund00012 Selenicereus undatus HOM05D003374 ORTHO05D009470 3.5e-14 82.4 113 49.6
Duzib145G0007 Durio zibethinus HOM05D003374 ORTHO05D009470 5.1e-13 78.6 61 65.6
TPR.G25136 Trifolium pratense HOM05D000373 ORTHO05D001763 5.1e-13 78.6 69 65.2
Solyc02g083380.3 Solanum lycopersicum HOM05D003374 ORTHO05D009470 4.7e-11 72.0 58 60.3
ATR0346G001 Amborella trichopoda HOM05D003374 ORTHO05D009470 6.2e-11 71.6 58 62.1
Ah.01g008140 Amaranthus hybridus HOM05D003374 ORTHO05D009470 9.0e-10 67.8 92 50.0
AUR62010008 Chenopodium quinoa HOM05D003374 ORTHO05D010386 2.2e-08 63.2 90 43.3


User provided reference genes

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