Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.7G174100 Prunus persica HOM05D007821 ORTHO05D009897 7.1e-77 290.4 138 100.0
MD15G1238300 Malus domestica HOM05D007821 ORTHO05D009897 1.2e-55 219.9 139 78.4
FAN28G2391 Fragaria x ananassa HOM05D007821 ORTHO05D009897 1.5e-55 219.5 140 81.4
RcHm_v2.0_Chr2g0098471 Rosa chinensis HOM05D007821 ORTHO05D009897 1.5e-55 219.5 140 81.4
FvH4_1g11180 Fragaria vesca HOM05D007821 ORTHO05D009897 3.5e-55 218.4 140 80.7
FAN19G2165 Fragaria x ananassa HOM05D007821 ORTHO05D009897 3.5e-55 218.4 140 80.7
FAN23G1973 Fragaria x ananassa HOM05D007821 ORTHO05D009897 1.9e-53 212.6 140 80.0
MD02G1124300 Malus domestica HOM05D007821 ORTHO05D009897 3.2e-53 211.8 139 76.3
Duzib147G1309 Durio zibethinus HOM05D007821 ORTHO05D009897 1.3e-49 199.9 138 76.1
CiPaw.07G062800 Carya illinoinensis HOM05D007821 ORTHO05D009897 1.7e-49 199.5 138 71.0
QL06p051907 Quercus lobata HOM05D007821 ORTHO05D009897 7.0e-48 194.1 137 71.5
Manes.02G109600 Manihot esculenta HOM05D007821 ORTHO05D009897 1.3e-46 189.9 138 72.5
Dinv40139 Davidia involucrata HOM05D007821 ORTHO05D009897 1.7e-46 189.5 138 68.1
Thecc.01G012400 Theobroma cacao HOM05D007821 ORTHO05D009897 3.8e-46 188.3 139 72.7
Potri.005G108633 Populus trichocarpa HOM05D007821 ORTHO05D009897 6.5e-46 187.6 138 68.8
Cfa007023 Carpinus fangiana HOM05D007821 ORTHO05D009897 8.5e-46 187.2 133 68.4
COL.COLO4_22487 Corchorus olitorius HOM05D007821 ORTHO05D009897 1.1e-45 186.8 138 68.1
Gohir.D11G179200 Gossypium hirsutum HOM05D007821 ORTHO05D009897 1.5e-45 186.4 138 69.6
Gorai.007G191100 Gossypium raimondii HOM05D007821 ORTHO05D009897 1.5e-45 186.4 138 69.6
Lj4g0018241 Lotus japonicus HOM05D007821 ORTHO05D009897 6.1e-44 181.0 139 67.6
Sabra05G0089000 Salix brachista HOM05D006929 ORTHO05D008646 6.1e-44 181.0 138 66.7
Gohir.A11G172200 Gossypium hirsutum HOM05D007821 ORTHO05D009897 1.8e-43 179.5 138 67.4
Hma1.2p1_0315F.1_g122510 Hydrangea macrophylla HOM05D007821 ORTHO05D009897 3.0e-43 178.7 138 62.3
TWI73G0676 Tripterygium wilfordii HOM05D007821 ORTHO05D009897 5.2e-43 177.9 139 66.2
Actinidia35672 Actinidia chinensis HOM05D007821 ORTHO05D009897 2.0e-42 176.0 141 65.2
Ciclev10026734m.g Citrus clementina HOM05D007821 ORTHO05D009897 4.8e-41 171.4 137 66.4
Gohir.D10G089100 Gossypium hirsutum HOM05D007821 ORTHO05D009897 4.1e-40 168.3 138 64.5
Gorai.011G098000 Gossypium raimondii HOM05D007821 ORTHO05D009897 4.1e-40 168.3 138 64.5
Oeu039727.1 Olea europaea HOM05D007821 ORTHO05D009897 2.0e-39 166.0 139 61.2
Gohir.A10G099000 Gossypium hirsutum HOM05D007821 ORTHO05D009897 7.7e-39 164.1 138 63.0
arahy.Tifrunner.gnm1.ann1.B80PS6 Arachis hypogaea HOM05D007821 ORTHO05D009897 1.0e-38 163.7 124 65.3
TAR376G1238 Trochodendron aralioides HOM05D007821 ORTHO05D009897 1.0e-38 163.7 138 62.3
Glyma.02G044900 Glycine max HOM05D007821 ORTHO05D009897 2.2e-38 162.5 133 61.7
Nn5g30827 Nelumbo nucifera HOM05D007821 ORTHO05D009897 5.0e-38 161.4 131 64.1
Psat4g102440 Pisum sativum HOM05D007821 ORTHO05D009897 8.5e-38 160.6 136 57.4
Oeu012560.1 Olea europaea HOM05D007821 ORTHO05D009897 1.1e-37 160.2 132 61.4
Glyma.16G122400 Glycine max HOM05D007821 ORTHO05D009897 2.5e-37 159.1 133 60.2
VMungo0251G0901 Vigna mungo HOM05D007821 ORTHO05D009897 2.5e-37 159.1 137 59.1
FAN26G1107 Fragaria x ananassa HOM05D007821 ORTHO05D009897 5.5e-37 157.9 104 78.8
Medtr8g075000 Medicago truncatula HOM05D007821 ORTHO05D009897 7.2e-37 157.5 149 57.7
arahy.Tifrunner.gnm1.ann1.F8FFU1 Arachis hypogaea HOM05D007821 ORTHO05D009897 1.2e-36 156.8 139 60.4
PGR119G1098 Punica granatum HOM05D007821 ORTHO05D009897 1.6e-36 156.4 134 59.7
Medtr8g075080 Medicago truncatula HOM05D007821 ORTHO05D009897 4.7e-36 154.8 149 57.0
DCAR_011577 Daucus carota HOM05D007821 ORTHO05D009897 1.8e-35 152.9 123 62.6
Phvul.003G266700 Phaseolus vulgaris HOM05D007821 ORTHO05D009897 1.8e-35 152.9 138 58.7
Cc07_g11250 Coffea canephora HOM05D007821 ORTHO05D009897 3.0e-35 152.1 140 60.7
Aqoxy6G02053 Aquilegia oxysepala HOM05D007821 ORTHO05D009897 4.4e-34 148.3 138 56.5
CANSAT01G0454 Cannabis sativa HOM05D007821 ORTHO05D009897 4.4e-34 148.3 147 59.2
CsaV3_6G047470 Cucumis sativus L. HOM05D007821 ORTHO05D009897 7.5e-34 147.5 138 58.0
PSO675G1463 Papaver somniferum HOM05D007821 ORTHO05D009897 1.3e-33 146.7 143 56.6
Peaxi162Scf00328g00213 Petunia axillaris HOM05D007821 ORTHO05D009897 1.3e-33 146.7 136 57.4
MELO3C033032.2 Cucumis melo HOM05D007821 ORTHO05D009897 2.8e-33 145.6 138 56.5
Nitab4.5_0006899g0050 Nicotiana tabacum HOM05D007821 ORTHO05D009897 4.9e-33 144.8 136 56.6
TPR.G19477 Trifolium pratense HOM05D006929 ORTHO05D008646 1.1e-32 143.7 177 48.0
Nitab4.5_0016722g0010 Nicotiana tabacum HOM05D007821 ORTHO05D009897 1.2e-31 140.2 136 56.6
EL10Ac6g13327 Beta vulgaris HOM05D007821 ORTHO05D009897 7.7e-31 137.5 117 55.6
GSVIVG01006893001 Vitis vinifera HOM05D007821 ORTHO05D009897 7.7e-31 137.5 115 61.7
PSO541G0785 Papaver somniferum HOM05D007821 ORTHO05D009897 1.7e-30 136.3 142 54.9
Sed0025726 Sechium edule HOM05D007821 ORTHO05D009897 4.2e-29 131.7 124 56.5
Sopen02g028230 Solanum pennellii HOM05D007821 ORTHO05D009897 7.2e-29 131.0 108 63.0
Solyc02g083440.3 Solanum lycopersicum HOM05D007821 ORTHO05D009897 2.8e-28 129.0 108 63.0
PGSC0003DMG400003657 Solanum tuberosum HOM05D007821 ORTHO05D009897 2.8e-28 129.0 108 63.0
CAN.G890.37 Capsicum annuum HOM05D007821 ORTHO05D009897 3.0e-27 125.6 110 60.9
Atru.chr3.889 Acer truncatum HOM05D007821 ORTHO05D009897 8.9e-27 124.0 127 48.8
Atru.chr3.899 Acer truncatum HOM05D007821 ORTHO05D009897 8.9e-27 124.0 127 48.8
AUR62026232 Chenopodium quinoa HOM05D007821 ORTHO05D009897 8.3e-25 117.5 116 50.9
AUR62026417 Chenopodium quinoa HOM05D007821 ORTHO05D009897 8.3e-25 117.5 116 51.7
Eucgr.I02312 Eucalyptus grandis HOM05D007821 ORTHO05D009897 1.1e-24 117.1 138 48.6
Lalb_Chr09g0334261 Lupinus albus HOM05D007821 ORTHO05D009897 3.2e-24 115.5 82 68.3
Aa31sc1371G20 Aethionema arabicum HOM05D007821 ORTHO05D009897 1.7e-22 109.8 115 52.2
Sp5g10860 Schrenkiella parvula HOM05D007821 ORTHO05D009897 5.2e-19 98.2 97 49.5
A09p44430 Brassica napus HOM05D007821 ORTHO05D009897 4.4e-18 95.1 102 48.0
BraA09t39902Z Brassica rapa HOM05D007821 ORTHO05D009897 4.4e-18 95.1 102 48.0
BolC8t50278H Brassica oleracea HOM05D007821 ORTHO05D009897 7.5e-18 94.4 102 47.1
A01p23500 Brassica napus HOM05D007821 ORTHO05D009897 4.9e-17 91.7 98 50.0
C08p26640 Brassica napus HOM05D007821 ORTHO05D009897 4.9e-17 91.7 102 46.1
BraA01t02257Z Brassica rapa HOM05D007821 ORTHO05D009897 4.9e-17 91.7 98 50.0
AL5G31800 Arabidopsis lyrata HOM05D007821 ORTHO05D009897 1.1e-16 90.5 97 46.4
C01p29170 Brassica napus HOM05D007821 ORTHO05D009897 3.2e-16 89.0 98 51.0
Carub.0005s1774 Capsella rubella HOM05D007821 ORTHO05D009897 7.0e-16 87.8 101 46.5
BolC1t02847H Brassica oleracea HOM05D007821 ORTHO05D009897 9.2e-16 87.4 98 51.0
HanXRQChr15g0484781 Helianthus annuus HOM05D007821 ORTHO05D009897 9.2e-16 87.4 139 41.0
C07p46290 Brassica napus HOM05D007821 ORTHO05D009897 1.7e-14 83.2 98 44.9
ECA246G2630 Erigeron canadensis HOM05D007821 ORTHO05D009897 2.3e-14 82.8 120 46.7
SEGI_40728 Sequoiadendron giganteum HOM05D001188 ORTHO05D001032 4.7e-12 75.1 98 44.9
Ah.03g137620 Amaranthus hybridus HOM05D001188 ORTHO05D001032 7.5e-10 67.8 113 38.1
SEGI_37570 Sequoiadendron giganteum HOM05D001188 ORTHO05D001032 3.7e-09 65.5 89 40.4
Lj6A758T16 Lonicera japonica HOM05D001188 ORTHO05D001032 1.1e-08 63.9 145 30.3
CAN.G610.80 Capsicum annuum HOM05D001188 ORTHO05D001032 1.4e-08 63.5 113 36.3
Rhsim08G0030600 Rhododendron simsii HOM05D007821 ORTHO05D009897 4.1e-08 62.0 67 52.2
Mapoly0047s0036 Marchantia polymorpha HOM05D001188 ORTHO05D001032 5.4e-08 61.6 98 37.8
Dinv34823 Davidia involucrata HOM05D001188 ORTHO05D001032 7.1e-08 61.2 83 44.6
SGA_v2.0_scaffold36G14537 Striga asiatica HOM05D001188 ORTHO05D001032 9.2e-08 60.8 120 36.7
Cc11_g10110 Coffea canephora HOM05D001188 ORTHO05D001032 2.1e-07 59.7 95 35.8
AUR62035213 Chenopodium quinoa HOM05D001188 ORTHO05D001032 3.5e-07 58.9 109 34.9
AUR62002861 Chenopodium quinoa HOM05D001188 ORTHO05D001032 4.6e-07 58.5 101 35.6
ECA240G2122 Erigeron canadensis HOM05D001188 ORTHO05D001032 1.0e-06 57.4 96 35.4
ClCG05G011830 Citrullus lanatus HOM05D001188 ORTHO05D001032 1.3e-06 57.0 140 30.7
Rhsim10G0067000 Rhododendron simsii HOM05D001188 ORTHO05D001032 1.3e-06 57.0 108 35.2
ClCG01G020560 Citrullus lanatus HOM05D007821 ORTHO05D009897 1.7e-06 56.6 55 52.7
COL.COLO4_09325 Corchorus olitorius HOM05D001188 ORTHO05D001032 2.3e-06 56.2 117 36.8
unitig_46.g18719 Utricularia gibba HOM05D007821 ORTHO05D009897 2.3e-06 56.2 67 41.8
vmacro17716 Vaccinium macrocarpon HOM05D001188 ORTHO05D001032 2.3e-06 56.2 97 38.1
vmacro23366 Vaccinium macrocarpon HOM05D001188 ORTHO05D001032 2.3e-06 56.2 97 38.1
CiPaw.04G042000 Carya illinoinensis HOM05D001188 ORTHO05D001032 3.0e-06 55.8 141 32.6
CsaV3_3G020680 Cucumis sativus L. HOM05D001188 ORTHO05D001032 3.0e-06 55.8 138 31.9
PGR044G0229 Punica granatum HOM05D001188 ORTHO05D001032 3.0e-06 55.8 102 39.2
Lj3C1014T9 Lonicera japonica HOM05D001188 ORTHO05D001032 3.9e-06 55.5 146 28.1
PGR042G2073 Punica granatum HOM05D001188 ORTHO05D001032 3.9e-06 55.5 113 29.2
GSVIVG01011892001 Vitis vinifera HOM05D001188 ORTHO05D001032 3.9e-06 55.5 110 36.4
CSS0033520 Camellia sinensis var. sinensis HOM05D001188 ORTHO05D001032 5.1e-06 55.1 114 31.6
Sopen04g002280 Solanum pennellii HOM05D001188 ORTHO05D001032 5.1e-06 55.1 140 28.6
PGSC0003DMG401007748 Solanum tuberosum HOM05D001188 ORTHO05D001032 5.1e-06 55.1 142 29.6
EL10Ac2g04580 Beta vulgaris HOM05D001188 ORTHO05D001032 6.6e-06 54.7 100 38.0
MELO3C023804.2 Cucumis melo HOM05D001188 ORTHO05D001032 6.6e-06 54.7 138 31.2
Solyc04g007220.4 Solanum lycopersicum HOM05D001188 ORTHO05D001032 6.6e-06 54.7 140 28.6
Gohir.D06G049000 Gossypium hirsutum HOM05D001188 ORTHO05D001032 8.6e-06 54.3 115 33.0
QL02p051463 Quercus lobata HOM05D001188 ORTHO05D001032 8.6e-06 54.3 115 33.9
Hund25061 Selenicereus undatus HOM05D001188 ORTHO05D001032 8.6e-06 54.3 102 33.3


User provided reference genes

Program Settings