Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.7G173800 Prunus persica HOM05D004723 ORTHO05D006176 0.0e+00 1100.5 695 100.0
MD02G1124600 Malus domestica HOM05D004723 ORTHO05D006176 7.9e-225 784.3 708 75.7
RcHm_v2.0_Chr2g0098611 Rosa chinensis HOM05D004723 ORTHO05D006176 2.4e-197 693.0 724 67.0
FAN26G3228 Fragaria x ananassa HOM05D004723 ORTHO05D006176 4.0e-192 675.6 694 65.7
FAN19G1371 Fragaria x ananassa HOM05D004723 ORTHO05D006176 2.4e-189 666.4 692 68.2
FvH4_1g11200 Fragaria vesca HOM05D004723 ORTHO05D006176 1.6e-188 663.7 709 67.7
Atru.chr3.886 Acer truncatum HOM05D004723 ORTHO05D006176 4.7e-185 652.1 718 61.3
Atru.chr3.897 Acer truncatum HOM05D004723 ORTHO05D006176 4.7e-185 652.1 718 61.3
QL06p051414 Quercus lobata HOM05D004723 ORTHO05D006176 7.5e-183 644.8 711 65.3
Haze_03712 Corylus avellana HOM05D004723 ORTHO05D006176 2.7e-180 636.3 709 58.8
Cfa007019 Carpinus fangiana HOM05D004723 ORTHO05D006176 3.0e-179 632.9 704 60.1
CiPaw.07G062200 Carya illinoinensis HOM05D004723 ORTHO05D006176 8.6e-179 631.3 712 58.0
TWI09G0244 Tripterygium wilfordii HOM05D004723 ORTHO05D006176 1.6e-177 627.1 725 58.9
Eucgr.I02314 Eucalyptus grandis HOM05D004723 ORTHO05D006176 2.1e-177 626.7 722 57.5
Gorai.012G044400 Gossypium raimondii HOM05D004723 ORTHO05D006176 6.2e-177 625.2 714 58.7
Potri.005G108800 Populus trichocarpa HOM05D004723 ORTHO05D006176 1.1e-176 624.4 741 61.9
Manes.10G142700 Manihot esculenta HOM05D004723 ORTHO05D006176 2.6e-175 619.8 718 56.7
GSVIVG01007226001 Vitis vinifera HOM05D004723 ORTHO05D006176 4.4e-175 619.0 675 57.2
Thecc.08G139800 Theobroma cacao HOM05D004723 ORTHO05D006176 1.4e-173 614.0 725 59.9
Sed0008382 Sechium edule HOM05D004723 ORTHO05D006176 3.2e-173 612.8 723 56.8
Cc07_g11220 Coffea canephora HOM05D004723 ORTHO05D006176 9.2e-173 611.3 729 54.6
Sabra05G0089200 Salix brachista HOM05D004723 ORTHO05D006176 1.6e-172 610.5 719 61.2
Gohir.A05G376600 Gossypium hirsutum HOM05D004723 ORTHO05D006176 4.6e-172 609.0 707 58.6
Lj4A224T28 Lonicera japonica HOM05D004723 ORTHO05D006176 6.6e-171 605.1 736 57.7
Nn5g30820 Nelumbo nucifera HOM05D004723 ORTHO05D006176 9.5e-170 601.3 682 56.2
Duzib147G1420 Durio zibethinus HOM05D004723 ORTHO05D006176 5.2e-168 595.5 739 56.0
CSS0012813 Camellia sinensis var. sinensis HOM05D004723 ORTHO05D006176 2.6e-167 593.2 721 56.6
CSS0036730 Camellia sinensis var. sinensis HOM05D004723 ORTHO05D006176 3.2e-165 586.3 711 56.7
Ciclev10025027m.g Citrus clementina HOM05D004723 ORTHO05D006176 7.8e-164 581.6 706 62.3
TAR628G1348 Trochodendron aralioides HOM05D004723 ORTHO05D006176 1.1e-162 577.8 651 62.1
ClCG05G000690 Citrullus lanatus HOM05D004723 ORTHO05D006176 4.3e-162 575.9 750 52.5
FAN23G0842 Fragaria x ananassa HOM05D004723 ORTHO05D006176 9.6e-162 574.7 646 63.3
MELO3C006009.2 Cucumis melo HOM05D004723 ORTHO05D006176 8.9e-160 568.2 746 53.9
Sc07g0001170 Simmondsia chinensis HOM05D004723 ORTHO05D006176 1.7e-158 563.9 728 58.5
PGR119G2074 Punica granatum HOM05D004723 ORTHO05D006176 2.9e-158 563.1 751 55.0
Nitab4.5_0006899g0060 Nicotiana tabacum HOM05D004723 ORTHO05D006176 4.9e-158 562.4 767 54.8
PGSC0003DMG400003588 Solanum tuberosum HOM05D004723 ORTHO05D006176 8.4e-158 561.6 761 54.5
Nitab4.5_0001789g0050 Nicotiana tabacum HOM05D004723 ORTHO05D006176 1.7e-155 553.9 712 57.9
Solyc02g083470.3 Solanum lycopersicum HOM05D004723 ORTHO05D006176 5.1e-155 552.4 767 55.4
CsaV3_3G007910 Cucumis sativus L. HOM05D004723 ORTHO05D006176 6.6e-155 552.0 751 55.5
Peaxi162Scf00198g00136 Petunia axillaris HOM05D004723 ORTHO05D006176 8.7e-155 551.6 713 58.8
MSTRG.10980 Avicennia marina HOM05D004723 ORTHO05D006176 1.1e-154 551.2 720 51.1
Sopen02g028260 Solanum pennellii HOM05D004723 ORTHO05D006176 1.6e-153 547.4 770 55.6
arahy.Tifrunner.gnm1.ann1.DG5MW5 Arachis hypogaea HOM05D004723 ORTHO05D006176 3.6e-153 546.2 686 57.3
Actinidia35669 Actinidia chinensis HOM05D004723 ORTHO05D006176 4.8e-153 545.8 723 53.5
CANSAT25G3056 Cannabis sativa HOM05D004723 ORTHO05D006176 3.1e-152 543.1 722 59.8
Gohir.1Z049326 Gossypium hirsutum HOM05D004723 ORTHO05D006176 4.0e-152 542.7 682 55.7
Cpa.g.sc6.304 Carica papaya HOM05D004723 ORTHO05D006176 9.0e-152 541.6 710 55.8
Lalb_Chr16g0391491 Lupinus albus HOM05D004723 ORTHO05D006176 1.2e-151 541.2 702 57.7
ECA232G2222 Erigeron canadensis HOM05D004723 ORTHO05D006176 1.5e-151 540.8 680 53.4
CAN.G890.41 Capsicum annuum HOM05D004723 ORTHO05D006176 2.0e-151 540.4 553 59.3
DCAR_024713 Daucus carota HOM05D004723 ORTHO05D006176 2.7e-148 530.0 733 51.8
Hund14070 Selenicereus undatus HOM05D004723 ORTHO05D006176 4.6e-148 529.3 625 61.3
HanXRQChr09g0257321 Helianthus annuus HOM05D004723 ORTHO05D006176 6.0e-148 528.9 730 50.5
EL10Ac6g15170 Beta vulgaris HOM05D004723 ORTHO05D006176 1.6e-145 520.8 707 55.0
arahy.Tifrunner.gnm1.ann1.7VD04T Arachis hypogaea HOM05D004723 ORTHO05D006176 4.8e-145 519.2 675 57.6
Rhsim08G0030800 Rhododendron simsii HOM05D004723 ORTHO05D006176 2.2e-142 510.4 664 52.9
Lsat_1_v5_gn_4_144101 Lactuca sativa HOM05D004723 ORTHO05D006176 1.1e-141 508.1 710 52.8
Aqoxy6G02087 Aquilegia oxysepala HOM05D004723 ORTHO05D006176 9.3e-141 505.0 790 49.4
Ca_18264_v3 Cicer arietinum L. HOM05D004723 ORTHO05D006176 1.1e-138 498.0 676 55.5
Lj4g0028127 Lotus japonicus HOM05D004723 ORTHO05D006176 1.1e-138 498.0 672 54.8
Psat7g090000 Pisum sativum HOM05D004723 ORTHO05D006176 7.4e-138 495.4 701 50.8
Glyma.16G122800 Glycine max HOM05D004723 ORTHO05D006176 4.8e-137 492.7 699 50.4
PSO675G8954 Papaver somniferum HOM05D004723 ORTHO05D006176 8.1e-137 491.9 741 48.7
VMungo0251G3240 Vigna mungo HOM05D004723 ORTHO05D006176 8.1e-137 491.9 705 49.4
Glyma.02G045200 Glycine max HOM05D004723 ORTHO05D006176 4.0e-136 489.6 702 51.1
Phvul.003G266400 Phaseolus vulgaris HOM05D004723 ORTHO05D006176 9.0e-136 488.4 725 51.4
PSO541G1155 Papaver somniferum HOM05D004723 ORTHO05D006176 2.5e-133 480.3 722 50.1
Migut.F01827 Erythranthe guttata HOM05D004723 ORTHO05D006176 6.0e-132 475.7 547 53.7
unitig_22.g6210 Utricularia gibba HOM05D004119 ORTHO05D004797 7.9e-132 475.3 647 51.5
Oeu005338.2 Olea europaea HOM05D004723 ORTHO05D006176 1.1e-130 471.5 784 49.4
SGA_v2.0_scaffold111G31425 Striga asiatica HOM05D004723 ORTHO05D006176 1.9e-130 470.7 741 51.1
AT3G01160 Arabidopsis thaliana HOM05D004723 ORTHO05D006176 4.3e-130 469.5 729 50.8
vmacro18436 Vaccinium macrocarpon HOM05D004723 ORTHO05D006176 7.4e-130 468.8 729 46.4
AL3G11100 Arabidopsis lyrata HOM05D004723 ORTHO05D006176 1.2e-127 461.5 733 49.7
AUR62003701 Chenopodium quinoa HOM05D004723 ORTHO05D006176 1.2e-127 461.5 761 47.6
Medtr4g096820 Medicago truncatula HOM05D004723 ORTHO05D006176 1.8e-123 447.6 716 47.9
Aa31LG5G12460 Aethionema arabicum HOM05D004723 ORTHO05D006176 7.4e-122 442.2 767 53.1
Sp3g00960 Schrenkiella parvula HOM05D004723 ORTHO05D006176 4.1e-120 436.4 739 48.7
AUR62018009 Chenopodium quinoa HOM05D004723 ORTHO05D006176 6.5e-118 429.1 553 50.8
BraA05t23177Z Brassica rapa HOM05D004723 ORTHO05D006176 4.2e-117 426.4 730 51.2
Thhalv10020182m.g Eutrema salsugineum HOM05D004723 ORTHO05D006176 2.7e-116 423.7 738 48.2
ATR0665G361 Amborella trichopoda HOM05D004723 ORTHO05D006176 7.9e-116 422.2 520 55.6
A05p44800 Brassica napus HOM05D004723 ORTHO05D006176 1.4e-115 421.4 730 51.1
Carub.0003s0100 Capsella rubella HOM05D004723 ORTHO05D006176 6.7e-115 419.1 740 54.5
Gohir.1Z049627 Gossypium hirsutum HOM05D004723 ORTHO05D006176 8.2e-113 412.1 438 62.6
Medtr4g073330 Medicago truncatula HOM05D004723 ORTHO05D006176 8.2e-113 412.1 677 46.7
SHI00027 Sapria himalayana HOM05D004723 ORTHO05D006176 5.9e-111 406.0 617 45.9
CARHR075890 Cardamine hirsuta HOM05D004723 ORTHO05D006176 8.5e-110 402.1 726 50.1
Ah.01g003790 Amaranthus hybridus HOM05D004723 ORTHO05D006176 4.2e-109 399.8 707 47.1
BcaC05g30489 Brassica carinata HOM05D004723 ORTHO05D006176 4.2e-109 399.8 717 48.8
SEGI_08029 Sequoiadendron giganteum HOM05D004723 ORTHO05D006176 1.6e-108 397.9 521 49.9
C09p75390 Brassica napus HOM05D004723 ORTHO05D006176 2.3e-107 394.0 712 48.0
Dinv40130 Davidia involucrata HOM05D004723 ORTHO05D006176 3.0e-107 393.7 332 68.4
BcaC05g30387 Brassica carinata HOM05D004723 ORTHO05D006176 1.4e-104 384.8 716 46.8
MD15G1238700 Malus domestica HOM05D004723 ORTHO05D006176 7.0e-104 382.5 331 74.3
BolC5t35121H Brassica oleracea HOM05D004723 ORTHO05D006176 3.8e-102 376.7 719 45.5
AagrBONN_evm.TU.Sc2ySwM_117.2822 Anthoceros agrestis HOM05D004723 ORTHO05D006176 6.5e-102 375.9 696 42.5
TPR.G4863 Trifolium pratense HOM05D004723 ORTHO05D006176 4.2e-101 373.2 537 51.8
Os07g0531700 Oryza sativa ssp. japonica HOM05D004723 ORTHO05D006176 4.1e-96 356.7 617 49.8
Thecc.01G155000 Theobroma cacao HOM05D004723 ORTHO05D006176 1.0e-94 352.1 411 61.6
BcaC01g04506 Brassica carinata HOM05D004723 ORTHO05D006176 1.7e-94 351.3 709 46.7
Zm00001eb323180 Zea mays HOM05D004723 ORTHO05D006176 1.9e-93 347.8 633 46.6
AagrBONN_evm.TU.Sc2ySwM_368.2747 Anthoceros agrestis HOM05D004723 ORTHO05D006176 8.0e-92 342.4 689 43.0
CDE05G0976 Ceratophyllum demersum HOM05D004723 ORTHO05D006176 1.7e-89 334.7 378 55.3
MD15G1238600 Malus domestica HOM05D004723 ORTHO05D006176 1.7e-89 334.7 294 73.5
SMO232G0062 Selaginella moellendorffii HOM05D004723 ORTHO05D006176 6.5e-86 322.8 623 39.5
SMO239G0207 Selaginella moellendorffii HOM05D004723 ORTHO05D006176 8.8e-83 312.4 614 39.3
Pp3c17_7210 Physcomitrium patens HOM05D004723 ORTHO05D006176 2.8e-76 290.8 567 40.2
Mapoly0061s0018 Marchantia polymorpha HOM05D004723 ORTHO05D006176 1.6e-68 265.0 855 30.1
Rhsim08G0030900 Rhododendron simsii HOM05D004723 ORTHO05D006176 5.2e-67 260.0 495 41.6
TAR628G1016 Trochodendron aralioides HOM05D004723 ORTHO05D005421 3.9e-62 243.8 203 64.5
C03p39900 Brassica napus HOM05D004723 ORTHO05D006176 8.3e-57 226.1 197 60.9
Gohir.D04G039432 Gossypium hirsutum HOM05D004723 ORTHO05D006176 7.1e-56 223.0 281 50.5
HPP92_019125 Vanilla planifolia HOM05D004723 ORTHO05D006176 4.7e-52 210.3 201 53.2
COL.COLO4_33606 Corchorus olitorius HOM05D004723 ORTHO05D006176 8.9e-51 206.1 268 58.6
CBR_g41392 Chara braunii HOM05D004723 ORTHO05D006176 1.5e-50 205.3 734 33.0
PRCOL_00004947 Prasinoderma coloniale HOM05D004723 ORTHO05D006176 7.3e-45 186.4 596 33.1
MCO13G085 Micromonas commoda HOM05D004723 ORTHO05D006176 1.1e-43 182.6 425 35.8
TPR.G3121 Trifolium pratense HOM05D004723 ORTHO05D006176 1.4e-43 182.2 222 49.5
COL.COLO4_34179 Corchorus olitorius HOM05D004723 ORTHO05D006176 2.2e-41 174.9 545 30.3
Cre10.g452500 Chlamydomonas reinhardtii HOM05D004723 ORTHO05D006176 1.1e-40 172.6 440 36.6
CDE05G0343 Ceratophyllum demersum HOM05D004723 ORTHO05D006176 5.4e-40 170.2 270 48.9
HPP92_019124 Vanilla planifolia HOM05D004723 ORTHO05D006176 2.4e-32 144.8 211 47.4
TAR628G0893 Trochodendron aralioides HOM05D004723 ORTHO05D006176 3.3e-29 134.4 102 69.6
BolC3t16253H Brassica oleracea HOM05D004723 ORTHO05D006176 4.8e-28 130.6 109 57.8
GSVIVG01005594001 Vitis vinifera HOM05D004723 ORTHO05D006176 1.1e-27 129.4 172 51.2
Medtr3g107350 Medicago truncatula HOM05D004723 ORTHO05D006176 4.5e-26 124.0 294 42.5
Medtr3g107330 Medicago truncatula HOM05D004723 ORTHO05D006176 1.9e-24 118.6 99 58.6
Dinv40131 Davidia involucrata HOM05D004723 ORTHO05D006176 1.2e-23 115.9 133 52.6
GSVIVG01005388001 Vitis vinifera HOM05D004723 ORTHO05D006176 6.7e-22 110.2 70 72.9
Oeu046870.1 Olea europaea HOM05D004723 ORTHO05D006176 8.7e-22 109.8 138 50.0
TPR.G21433 Trifolium pratense HOM05D004723 ORTHO05D006176 7.4e-21 106.7 192 40.1
TPR.G330 Trifolium pratense HOM05D004723 ORTHO05D006176 3.7e-20 104.4 79 63.3
TPR.G36124 Trifolium pratense HOM05D004723 ORTHO05D006176 5.3e-19 100.5 79 60.8
THA.LOC104821168 Tarenaya hassleriana HOM05D004723 ORTHO05D006176 1.5e-18 99.0 154 49.4
Lsat_1_v5_gn_5_164041 Lactuca sativa HOM05D004723 ORTHO05D006176 3.4e-18 97.8 201 35.8
TPR.G29970 Trifolium pratense HOM05D004723 ORTHO05D006176 1.7e-17 95.5 92 56.5
AagrBONN_evm.TU.Sc2ySwM_117.2819 Anthoceros agrestis HOM05D004723 ORTHO05D006176 8.4e-17 93.2 332 29.2
Thecc.01G154900 Theobroma cacao HOM05D004723 ORTHO05D006176 1.4e-16 92.4 93 55.9
Thhalv10017085m.g Eutrema salsugineum HOM05D004723 ORTHO05D006176 1.2e-15 89.4 151 41.1
SEGI_25425 Sequoiadendron giganteum HOM05D004723 ORTHO05D006176 1.3e-12 79.3 68 58.8
Actinidia28727 Actinidia chinensis HOM05D004723 ORTHO05D006176 2.1e-12 78.6 105 48.6
COL.COLO4_33622 Corchorus olitorius HOM05D004723 ORTHO05D006176 4.8e-12 77.4 86 48.8
BolC3t16252H Brassica oleracea HOM05D004723 ORTHO05D006176 3.1e-11 74.7 59 67.8
FAN17G1680 Fragaria x ananassa HOM05D032679 ORTHO05D022627 2.0e-10 72.0 72 48.6
FAN24G3340 Fragaria x ananassa HOM05D032679 ORTHO05D022627 2.0e-10 72.0 72 48.6
FAN18G3965 Fragaria x ananassa HOM05D032679 ORTHO05D022627 1.0e-09 69.7 72 47.2
C03p39770 Brassica napus HOM05D059891 ORTHO05D040930 9.3e-08 63.2 69 50.7
BolC3t16251H Brassica oleracea HOM05D004723 ORTHO05D019910 2.1e-07 62.0 71 53.5
C03p39890 Brassica napus HOM05D004723 ORTHO05D019910 7.9e-07 60.1 71 52.1
FAN22G1655 Fragaria x ananassa HOM05D002244 ORTHO05D035452 1.0e-06 59.7 60 46.7
Eucgr.C02078 Eucalyptus grandis HOM05D000238 ORTHO05D010253 1.8e-06 58.9 33 72.7
FAN03G2005 Fragaria x ananassa HOM05D004723 ORTHO05D002269 1.8e-06 58.9 60 46.7
Nn1g05556 Nelumbo nucifera HOM05D004723 ORTHO05D006176 5.1e-06 57.4 48 56.2


User provided reference genes

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