Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.7G173600 Prunus persica HOM05D006745 ORTHO05D008449 1.8e-122 442.6 220 100.0
MD15G1238900 Malus domestica HOM05D006745 ORTHO05D008449 1.8e-98 362.8 222 80.6
FAN19G0356 Fragaria x ananassa HOM05D006745 ORTHO05D008449 2.2e-96 355.9 224 78.1
RcHm_v2.0_Chr2g0098641 Rosa chinensis HOM05D006745 ORTHO05D008449 4.9e-96 354.8 227 78.0
FAN23G2677 Fragaria x ananassa HOM05D006745 ORTHO05D008449 3.0e-93 345.5 224 76.3
FAN26G1827 Fragaria x ananassa HOM05D006745 ORTHO05D008449 1.1e-92 343.6 225 76.9
Thecc.01G012900 Theobroma cacao HOM05D006745 ORTHO05D008449 4.8e-91 338.2 203 81.3
Cfa007050 Carpinus fangiana HOM05D006745 ORTHO05D008449 4.0e-90 335.1 222 75.7
Potri.005G109000 Populus trichocarpa HOM05D006745 ORTHO05D008449 6.9e-90 334.3 213 77.5
TWI73G1304 Tripterygium wilfordii HOM05D006745 ORTHO05D008449 6.9e-90 334.3 224 74.1
Manes.01G150100 Manihot esculenta HOM05D006745 ORTHO05D008449 9.9e-89 330.5 224 71.9
QL06p051396 Quercus lobata HOM05D006745 ORTHO05D008449 9.9e-89 330.5 222 74.3
Ciclev10026368m.g Citrus clementina HOM05D006745 ORTHO05D008449 1.1e-87 327.0 224 71.9
CANSAT01G0215 Cannabis sativa HOM05D006745 ORTHO05D008449 3.2e-87 325.5 217 76.0
Duzib147G0156 Durio zibethinus HOM05D006745 ORTHO05D008449 7.1e-87 324.3 205 77.6
Actinidia28725 Actinidia chinensis HOM05D006745 ORTHO05D008449 9.3e-87 323.9 226 72.1
Gohir.A11G041100 Gossypium hirsutum HOM05D006745 ORTHO05D008449 9.3e-87 323.9 216 74.1
Gohir.D11G044400 Gossypium hirsutum HOM05D006745 ORTHO05D008449 2.1e-86 322.8 216 73.6
Gorai.007G047700 Gossypium raimondii HOM05D006745 ORTHO05D008449 2.1e-86 322.8 216 73.6
Eucgr.I02315 Eucalyptus grandis HOM05D006745 ORTHO05D008449 4.6e-86 321.6 215 74.4
Lj2A482T63 Lonicera japonica HOM05D006745 ORTHO05D008449 6.0e-86 321.2 221 72.4
VMungo1215G1582 Vigna mungo HOM05D006745 ORTHO05D008449 1.3e-85 320.1 224 73.7
Solyc02g061950.4 Solanum lycopersicum HOM05D006745 ORTHO05D008449 2.3e-85 319.3 228 70.2
vmacro18434 Vaccinium macrocarpon HOM05D006745 ORTHO05D008449 3.0e-85 318.9 220 72.3
Phvul.002G105300 Phaseolus vulgaris HOM05D006745 ORTHO05D008449 5.1e-85 318.2 229 71.2
Haze_03682 Corylus avellana HOM05D006745 ORTHO05D008449 6.7e-85 317.8 208 76.4
GSVIVG01007224001 Vitis vinifera HOM05D006745 ORTHO05D008449 6.7e-85 317.8 218 73.4
AUR62003702 Chenopodium quinoa HOM05D006745 ORTHO05D008449 8.7e-85 317.4 227 70.0
Oeu058205.1 Olea europaea HOM05D006745 ORTHO05D008449 2.5e-84 315.8 212 75.0
Oeu058207.1 Olea europaea HOM05D006745 ORTHO05D008449 2.5e-84 315.8 212 75.0
Rhsim08G0031100 Rhododendron simsii HOM05D006745 ORTHO05D008449 2.5e-84 315.8 208 75.5
Sopen02g012910 Solanum pennellii HOM05D006745 ORTHO05D008449 4.3e-84 315.1 228 69.7
PGR119G0426 Punica granatum HOM05D006745 ORTHO05D008449 1.6e-83 313.2 229 68.6
PGSC0003DMG401023885 Solanum tuberosum HOM05D006745 ORTHO05D008449 1.6e-83 313.2 228 68.4
Glyma.01G163200 Glycine max HOM05D006745 ORTHO05D008449 4.8e-83 311.6 225 70.7
THA.LOC104817830 Tarenaya hassleriana HOM05D006745 ORTHO05D008449 4.8e-83 311.6 214 72.9
CSS0026839 Camellia sinensis var. sinensis HOM05D006745 ORTHO05D008449 6.2e-83 311.2 197 78.2
Nn6g31942 Nelumbo nucifera HOM05D006745 ORTHO05D008449 6.2e-83 311.2 228 68.4
arahy.Tifrunner.gnm1.ann1.DU2BQF Arachis hypogaea HOM05D006745 ORTHO05D008449 8.1e-83 310.8 214 73.8
arahy.Tifrunner.gnm1.ann1.EE1FTG Arachis hypogaea HOM05D006745 ORTHO05D008449 8.1e-83 310.8 214 73.8
HanXRQChr16g0531741 Helianthus annuus HOM05D006745 ORTHO05D008449 1.1e-82 310.5 221 71.0
AL2G11270 Arabidopsis lyrata HOM05D006745 ORTHO05D008449 5.3e-82 308.1 220 70.9
CSS0046970 Camellia sinensis var. sinensis HOM05D006745 ORTHO05D008449 9.0e-82 307.4 197 77.2
Lj2g0007566 Lotus japonicus HOM05D006745 ORTHO05D008449 1.2e-81 307.0 223 70.0
MELO3C007934.2 Cucumis melo HOM05D006745 ORTHO05D008449 3.4e-81 305.4 223 66.4
CAN.G576.2 Capsicum annuum HOM05D006745 ORTHO05D008449 5.8e-81 304.7 213 71.8
Carub.0002s0099 Capsella rubella HOM05D006745 ORTHO05D008449 1.0e-80 303.9 215 70.7
CsaV3_6G047410 Cucumis sativus L. HOM05D006745 ORTHO05D008449 1.0e-80 303.9 223 65.9
EL10Ac6g15168 Beta vulgaris HOM05D006745 ORTHO05D008449 2.2e-80 302.8 214 71.5
A09p13970 Brassica napus HOM05D006745 ORTHO05D008449 2.2e-80 302.8 220 70.5
BcaC04g22678 Brassica carinata HOM05D006745 ORTHO05D008449 3.8e-80 302.0 214 71.0
BolC9t54579H Brassica oleracea HOM05D006745 ORTHO05D008449 3.8e-80 302.0 219 70.8
Lsat_1_v5_gn_3_71521 Lactuca sativa HOM05D006745 ORTHO05D008449 3.8e-80 302.0 209 72.7
Sc22g0002270 Simmondsia chinensis HOM05D006745 ORTHO05D008449 3.8e-80 302.0 226 66.4
BcaB07g31542 Brassica carinata HOM05D006745 ORTHO05D008449 6.5e-80 301.2 216 69.9
Nitab4.5_0000188g0160 Nicotiana tabacum HOM05D006745 ORTHO05D008449 2.5e-79 299.3 254 61.4
Migut.N00678 Erythranthe guttata HOM05D006745 ORTHO05D008449 4.2e-79 298.5 219 67.1
Sabra05G0089300 Salix brachista HOM05D006745 ORTHO05D008449 5.5e-79 298.1 189 77.2
Sed0008453 Sechium edule HOM05D006745 ORTHO05D008449 5.5e-79 298.1 222 65.3
TPR.G25110 Trifolium pratense HOM05D006745 ORTHO05D008449 9.3e-79 297.4 228 65.8
ClCG01G020530 Citrullus lanatus HOM05D006745 ORTHO05D008449 1.2e-78 297.0 247 61.1
Ca_24936_v3 Cicer arietinum L. HOM05D006745 ORTHO05D008449 1.6e-78 296.6 228 67.5
Medtr5g022860 Medicago truncatula HOM05D006745 ORTHO05D008449 2.7e-78 295.8 224 65.6
Aa31LG2G1020 Aethionema arabicum HOM05D006745 ORTHO05D008449 7.9e-78 294.3 216 68.5
ECA246G0119 Erigeron canadensis HOM05D006745 ORTHO05D008449 2.3e-77 292.7 211 70.6
Lalb_Chr09g0321491 Lupinus albus HOM05D006745 ORTHO05D008449 2.3e-77 292.7 218 68.8
SGA_v2.0_scaffold77G25309 Striga asiatica HOM05D006745 ORTHO05D008449 8.7e-77 290.8 227 67.4
CiPaw.07G062000 Carya illinoinensis HOM05D006745 ORTHO05D008449 1.1e-76 290.4 219 68.5
Psat2g152400 Pisum sativum HOM05D006745 ORTHO05D008449 1.9e-76 289.7 228 64.5
Ah.02g123330 Amaranthus hybridus HOM05D006745 ORTHO05D008449 5.7e-76 288.1 217 67.7
BcaC04g22675 Brassica carinata HOM05D006745 ORTHO05D008449 5.7e-76 288.1 222 68.0
PSO541G1183 Papaver somniferum HOM05D006745 ORTHO05D008449 5.7e-76 288.1 231 62.3
DCAR_023133 Daucus carota HOM05D006745 ORTHO05D008449 7.4e-76 287.7 229 64.6
PSO675G1483 Papaver somniferum HOM05D006745 ORTHO05D008449 1.3e-75 287.0 205 68.3
Cc07_g11200 Coffea canephora HOM05D006745 ORTHO05D008449 4.8e-75 285.0 189 73.0
Os02g0120300 Oryza sativa ssp. japonica HOM05D006745 ORTHO05D008449 8.2e-75 284.3 242 60.3
Zm00001eb229980 Zea mays HOM05D006745 ORTHO05D008449 1.1e-74 283.9 216 64.8
ATR0661G256 Amborella trichopoda HOM05D006745 ORTHO05D008449 6.9e-74 281.2 219 64.4
HPP92_012950 Vanilla planifolia HOM05D006745 ORTHO05D008449 7.6e-73 277.7 221 62.9
Aqoxy6G02103 Aquilegia oxysepala HOM05D006745 ORTHO05D008449 6.5e-72 274.6 218 63.8
Atru.chr3.895 Acer truncatum HOM05D006745 ORTHO05D008449 7.2e-71 271.2 228 62.3
FvH4_1g11230 Fragaria vesca HOM05D006745 ORTHO05D008449 3.0e-69 265.8 174 75.3
unitig_60.g25574 Utricularia gibba HOM05D006745 ORTHO05D008449 3.0e-69 265.8 256 54.7
AUR62018011 Chenopodium quinoa HOM05D006745 ORTHO05D008449 9.7e-68 260.8 188 71.3
FAN28G2493 Fragaria x ananassa HOM05D006745 ORTHO05D008449 3.1e-66 255.8 240 58.3
Peaxi162Scf00439g00049 Petunia axillaris HOM05D006745 ORTHO05D008449 4.5e-65 251.9 275 53.5
Thhalv10023706m.g Eutrema salsugineum HOM05D006745 ORTHO05D008449 8.5e-64 247.7 213 62.0
Sp2g00830 Schrenkiella parvula HOM05D006745 ORTHO05D008449 7.9e-62 241.1 217 59.0
CSS0012608 Camellia sinensis var. sinensis HOM05D006745 ORTHO05D008449 5.1e-61 238.4 179 68.7
SalBow3G1250 Salvia bowleyana HOM05D006745 ORTHO05D008449 8.2e-59 231.1 211 60.7
Atru.chr3.884 Acer truncatum HOM05D006745 ORTHO05D008449 1.1e-58 230.7 192 63.0
AT1G63855 Arabidopsis thaliana HOM05D006745 ORTHO05D008449 1.8e-58 229.9 215 57.7
Pp3c3_3178 Physcomitrium patens HOM05D006745 ORTHO05D008449 9.1e-58 227.6 193 58.5
CDE05G1799 Ceratophyllum demersum HOM05D006745 ORTHO05D008449 1.0e-56 224.2 214 56.1
Glyma.02G164500 Glycine max HOM05D006745 ORTHO05D008449 3.8e-56 222.2 180 60.0
Aqoxy278s001 Aquilegia oxysepala HOM05D006745 ORTHO05D008449 4.2e-55 218.8 189 60.3
Pp3c3_3170 Physcomitrium patens HOM05D006745 ORTHO05D008449 4.2e-55 218.8 210 54.3
Mapoly0041s0084 Marchantia polymorpha HOM05D006745 ORTHO05D008449 3.0e-53 212.6 211 53.1
Nitab4.5_0002337g0130 Nicotiana tabacum HOM05D006745 ORTHO05D008449 3.0e-53 212.6 206 56.8
SMO340G0117 Selaginella moellendorffii HOM05D006745 ORTHO05D008449 8.8e-53 211.1 209 51.7
CARHR047310 Cardamine hirsuta HOM05D006745 ORTHO05D008449 2.2e-51 206.5 149 69.1
Sed0011409 Sechium edule HOM05D006745 ORTHO05D008449 2.0e-49 199.9 248 47.6
Cpa.g.sc29.52 Carica papaya HOM05D006745 ORTHO05D008449 2.7e-46 189.5 145 64.1
CARHR047280 Cardamine hirsuta HOM05D006745 ORTHO05D008449 8.8e-45 184.5 112 76.8
arahy.Tifrunner.gnm1.ann1.N8WRPV Arachis hypogaea HOM05D006745 ORTHO05D008449 1.3e-40 170.6 130 66.2
Medtr3g096570 Medicago truncatula HOM05D006745 ORTHO05D008449 6.1e-38 161.8 114 69.3
Medtr3g096562 Medicago truncatula HOM05D006745 ORTHO05D008449 4.0e-37 159.1 118 66.1
MSTRG.17961 Avicennia marina HOM05D006745 ORTHO05D008449 6.5e-32 141.7 98 71.4
BraA09t37044Z Brassica rapa HOM05D006745 ORTHO05D008449 2.1e-30 136.7 100 70.0
SEGI_40099 Sequoiadendron giganteum HOM05D006745 ORTHO05D008449 8.3e-27 124.8 83 69.9
Rhsim01G0268300 Rhododendron simsii HOM05D006745 ORTHO05D008449 3.0e-21 106.3 94 58.5
Medtr2g078490 Medicago truncatula HOM05D006745 ORTHO05D008449 4.9e-19 99.0 108 48.1
Hund14069 Selenicereus undatus HOM05D006745 ORTHO05D008449 5.4e-18 95.5 137 44.5
Glyma.11G080201 Glycine max HOM05D006745 ORTHO05D008449 1.6e-17 94.0 75 57.3
COL.COLO4_22483 Corchorus olitorius HOM05D006745 ORTHO05D008449 5.6e-15 85.5 52 75.0
Mapoly0001s0305 Marchantia polymorpha HOM05D002956 ORTHO05D008031 7.0e-10 68.6 165 32.1
BolC4t24505H Brassica oleracea HOM05D006745 ORTHO05D008449 3.0e-08 63.2 97 44.3
HPP92_021095 Vanilla planifolia HOM05D001602 ORTHO05D001470 1.5e-07 60.8 137 35.0
Zm00001eb295360 Zea mays HOM05D001602 ORTHO05D001470 1.5e-07 60.8 129 38.0
Mapoly0059s0066 Marchantia polymorpha HOM05D001602 ORTHO05D001470 7.3e-07 58.5 141 35.5
PGSC0003DMG400014616 Solanum tuberosum HOM05D001602 ORTHO05D001470 7.3e-07 58.5 122 35.2
Solyc08g014040.3 Solanum lycopersicum HOM05D001602 ORTHO05D001470 9.5e-07 58.2 122 35.2
Sopen08g004920 Solanum pennellii HOM05D001602 ORTHO05D001470 9.5e-07 58.2 122 35.2
Os06g0101100 Oryza sativa ssp. japonica HOM05D001602 ORTHO05D001470 1.6e-06 57.4 163 34.4
Ciclev10033731m.g Citrus clementina HOM05D001602 ORTHO05D001470 2.8e-06 56.6 158 31.0
Gohir.D08G180900 Gossypium hirsutum HOM05D001602 ORTHO05D001470 4.7e-06 55.8 110 37.3
Gorai.004G189800 Gossypium raimondii HOM05D001602 ORTHO05D001470 4.7e-06 55.8 110 37.3
Hma1.2p1_0816F.1_g223000 Hydrangea macrophylla HOM05D001602 ORTHO05D001470 4.7e-06 55.8 174 28.7
AagrBONN_evm.TU.Sc2ySwM_362.258 Anthoceros agrestis HOM05D001602 ORTHO05D001470 6.2e-06 55.5 135 31.9
Haze_18406 Corylus avellana HOM05D000219 ORTHO05D000226 6.2e-06 55.5 129 35.7
Nitab4.5_0000242g0140 Nicotiana tabacum HOM05D001602 ORTHO05D001470 6.2e-06 55.5 122 35.2
Pp3c6_24550 Physcomitrium patens HOM05D002553 ORTHO05D002767 6.2e-06 55.5 127 29.9
A06p37580 Brassica napus HOM05D002553 ORTHO05D002767 8.1e-06 55.1 143 32.2
BraA06t26677Z Brassica rapa HOM05D002553 ORTHO05D002767 8.1e-06 55.1 143 32.2
CAN.G466.9 Capsicum annuum HOM05D001602 ORTHO05D001470 8.1e-06 55.1 122 34.4
Ciclev10003913m.g Citrus clementina HOM05D002553 ORTHO05D002767 8.1e-06 55.1 140 32.9


User provided reference genes

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