Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.7G171900 Prunus persica HOM05D004095 ORTHO05D003197 7.8e-150 534.3 380 100.0
MD02G1126500 Malus domestica HOM05D004095 ORTHO05D003197 5.0e-64 249.2 394 65.7
Cfa007004 Carpinus fangiana HOM05D004095 ORTHO05D003197 3.3e-63 246.5 404 43.1
Duzib264G0091 Durio zibethinus HOM05D004095 ORTHO05D003197 1.8e-53 214.2 406 40.1
Duzib147G0922 Durio zibethinus HOM05D004095 ORTHO05D003197 3.7e-51 206.5 406 38.2
Haze_03728 Corylus avellana HOM05D004095 ORTHO05D003197 3.5e-49 199.9 503 35.2
Duzib187G0006 Durio zibethinus HOM05D004095 ORTHO05D003197 1.0e-48 198.4 407 39.8
Atru.chr3.863_Atru.chr3.864 Acer truncatum HOM05D004095 ORTHO05D003197 1.3e-48 198.0 444 38.1
Gorai.003G007900 Gossypium raimondii HOM05D004095 ORTHO05D003197 1.1e-47 194.9 409 39.1
COL.COLO4_22466 Corchorus olitorius HOM05D004095 ORTHO05D003197 6.2e-46 189.1 404 37.4
FAN19G1292 Fragaria x ananassa HOM05D024588 ORTHO05D003197 1.2e-41 174.9 517 42.0
Gohir.D03G007700 Gossypium hirsutum HOM05D004095 ORTHO05D003197 3.5e-41 173.3 409 37.9
Gohir.A02G172400 Gossypium hirsutum HOM05D004095 ORTHO05D003197 1.3e-40 171.4 409 38.1
RcHm_v2.0_Chr2g0098961 Rosa chinensis HOM05D024588 ORTHO05D003197 1.7e-40 171.0 519 47.8
Eucgr.I02328 Eucalyptus grandis HOM05D004095 ORTHO05D003197 1.9e-39 167.5 400 37.8
TAR376G0784 Trochodendron aralioides HOM05D004095 ORTHO05D003197 4.9e-35 152.9 383 37.3
Gorai.008G131100 Gossypium raimondii HOM05D004095 ORTHO05D003197 5.1e-32 142.9 332 34.3
GSVIVG01018727001 Vitis vinifera HOM05D004095 ORTHO05D003197 5.1e-32 142.9 175 54.3
TAR381G0731 Trochodendron aralioides HOM05D004095 ORTHO05D003197 4.4e-28 129.8 408 36.5
Dinv31870 Davidia involucrata HOM05D004095 ORTHO05D003197 3.2e-26 123.6 401 34.2
FvH4_1g11400 Fragaria vesca HOM05D024588 ORTHO05D003197 4.2e-26 123.2 515 38.1
THA.LOC104804274 Tarenaya hassleriana HOM05D004095 ORTHO05D003197 6.0e-25 119.4 390 31.8
Nn6g31993 Nelumbo nucifera HOM05D004095 ORTHO05D003197 6.6e-24 115.9 401 32.9
THA.LOC104807504 Tarenaya hassleriana HOM05D004095 ORTHO05D003197 6.6e-24 115.9 396 31.1
TAR628G1526 Trochodendron aralioides HOM05D004095 ORTHO05D003197 3.3e-23 113.6 437 36.2
Ciclev10025767m.g Citrus clementina HOM05D004095 ORTHO05D003197 1.3e-22 111.7 367 43.6
CSS0032179 Camellia sinensis var. sinensis HOM05D004095 ORTHO05D003197 1.6e-22 111.3 409 32.3
PSO675G0587 Papaver somniferum HOM05D004095 ORTHO05D003197 6.2e-22 109.4 387 37.2
CSS0006390 Camellia sinensis var. sinensis HOM05D004095 ORTHO05D003197 1.1e-21 108.6 409 31.8
Cc10_g01420 Coffea canephora HOM05D004095 ORTHO05D003197 1.8e-21 107.8 409 30.8
Potri.002G019200 Populus trichocarpa HOM05D004095 ORTHO05D003197 5.8e-20 102.8 395 27.3
PGR119G1825 Punica granatum HOM05D004095 ORTHO05D003197 7.6e-20 102.4 166 53.0
Aqoxy5G01820 Aquilegia oxysepala HOM05D004095 ORTHO05D003197 1.1e-18 98.6 407 31.0
CARHR244340 Cardamine hirsuta HOM05D004095 ORTHO05D003197 7.1e-18 95.9 401 29.4
Thecc.02G059700 Theobroma cacao HOM05D015147 ORTHO05D003197 1.2e-17 95.1 425 26.6
PSO541G2818 Papaver somniferum HOM05D004095 ORTHO05D003197 3.5e-17 93.6 387 38.5
Gorai.008G208400 Gossypium raimondii HOM05D004095 ORTHO05D003197 4.6e-17 93.2 162 37.0
Gohir.D12G193466 Gossypium hirsutum HOM05D004095 ORTHO05D003197 1.3e-16 91.7 162 38.9
CSS0036757 Camellia sinensis var. sinensis HOM05D004095 ORTHO05D003197 1.8e-16 91.3 316 29.1
Manes.18G010907 Manihot esculenta HOM05D004095 ORTHO05D003197 8.7e-16 89.0 403 29.0
MD15G1242200 Malus domestica HOM05D024588 ORTHO05D003197 1.9e-15 87.8 108 67.6
Oeu061977.1 Olea europaea HOM05D004095 ORTHO05D003197 4.3e-15 86.7 414 29.7
QL11p050200 Quercus lobata HOM05D004095 ORTHO05D003197 1.6e-14 84.7 411 29.2
MSTRG.25264 Avicennia marina HOM05D004095 ORTHO05D003197 2.1e-14 84.3 395 37.2
C01p03060 Brassica napus HOM05D004095 ORTHO05D003197 2.1e-14 84.3 416 30.5
Actinidia17001 Actinidia chinensis HOM05D004095 ORTHO05D003197 4.8e-14 83.2 174 42.0
BcaNung05051 Brassica carinata HOM05D004095 ORTHO05D003197 6.2e-14 82.8 204 41.7
PSO700G0117 Papaver somniferum HOM05D004095 ORTHO05D003197 8.1e-14 82.4 427 26.7
MSTRG.1174 Avicennia marina HOM05D004095 ORTHO05D003197 1.8e-13 81.3 408 29.4
Peaxi162Scf00860g00422 Petunia axillaris HOM05D004095 ORTHO05D003197 2.4e-13 80.9 389 29.8
Sc15g0004790 Simmondsia chinensis HOM05D004095 ORTHO05D003197 2.4e-13 80.9 417 28.5
Actinidia15439 Actinidia chinensis HOM05D004095 ORTHO05D003197 4.0e-13 80.1 173 42.8
TWI12G1115 Tripterygium wilfordii HOM05D004095 ORTHO05D003197 4.0e-13 80.1 405 27.2
Carub.0007s0428 Capsella rubella HOM05D004095 ORTHO05D003197 9.0e-13 79.0 413 29.1
Lj4A21T58 Lonicera japonica HOM05D004095 ORTHO05D003197 9.0e-13 79.0 415 28.9
BraA03t15466Z Brassica rapa HOM05D004095 ORTHO05D003197 2.6e-12 77.4 447 26.4
vmacro07570 Vaccinium macrocarpon HOM05D004095 ORTHO05D003197 2.6e-12 77.4 424 41.0
BolC1t00292H Brassica oleracea HOM05D004095 ORTHO05D003197 4.5e-12 76.6 408 28.9
CAN.G311.49 Capsicum annuum HOM05D004095 ORTHO05D003197 5.8e-12 76.3 389 28.5
PSO170G2543 Papaver somniferum HOM05D004095 ORTHO05D003197 5.8e-12 76.3 422 27.3
PGSC0003DMG400009946 Solanum tuberosum HOM05D004095 ORTHO05D003197 5.8e-12 76.3 394 28.9
Migut.C00862 Erythranthe guttata HOM05D004095 ORTHO05D003197 7.6e-12 75.9 411 28.5
FAN23G2095 Fragaria x ananassa HOM05D024588 ORTHO05D003197 7.6e-12 75.9 79 62.0
Nn5g30782 Nelumbo nucifera HOM05D004095 ORTHO05D003197 1.0e-11 75.5 414 31.4
AL7G15100 Arabidopsis lyrata HOM05D004095 ORTHO05D003197 1.3e-11 75.1 440 28.0
Thecc.02G060400 Theobroma cacao HOM05D015147 ORTHO05D003197 4.9e-11 73.2 98 42.9
CiPaw.07G146700 Carya illinoinensis HOM05D004095 ORTHO05D003197 8.4e-11 72.4 404 25.0
Solyc04g081730.3 Solanum lycopersicum HOM05D004095 ORTHO05D003197 8.4e-11 72.4 406 28.6
MBI05_g23379_MAGBIO Magnolia biondii HOM05D004095 ORTHO05D003197 1.1e-10 72.0 169 44.4
Oeu026642.1 Olea europaea HOM05D004095 ORTHO05D003197 1.1e-10 72.0 473 26.0
Sp7g33720 Schrenkiella parvula HOM05D004095 ORTHO05D003197 1.9e-10 71.2 444 28.8
Sopen04g035350 Solanum pennellii HOM05D004095 ORTHO05D003197 1.9e-10 71.2 404 28.0
BcaNung00778 Brassica carinata HOM05D004095 ORTHO05D003197 2.5e-10 70.9 417 29.0
A03p63990 Brassica napus HOM05D004095 ORTHO05D003197 2.5e-10 70.9 213 38.5
Lsat_1_v5_gn_8_29800 Lactuca sativa HOM05D004095 ORTHO05D003197 2.5e-10 70.9 156 42.9
Haze_22667 Corylus avellana HOM05D004095 ORTHO05D003197 3.2e-10 70.5 398 27.4
arahy.Tifrunner.gnm1.ann1.I59WU7 Arachis hypogaea HOM05D004095 ORTHO05D003197 4.2e-10 70.1 393 27.5
Lj4A799T84 Lonicera japonica HOM05D004095 ORTHO05D003197 5.5e-10 69.7 164 42.7
MELO3C011353.2 Cucumis melo HOM05D004095 ORTHO05D003197 7.1e-10 69.3 412 29.4
Hma1.2p1_0023F.1_g015650 Hydrangea macrophylla HOM05D004095 ORTHO05D003197 7.1e-10 69.3 297 27.9
Potri.005G242400 Populus trichocarpa HOM05D004095 ORTHO05D003197 7.1e-10 69.3 401 25.4
Cfa005239 Carpinus fangiana HOM05D004095 ORTHO05D003197 9.3e-10 68.9 384 27.9
Duzib052G0919 Durio zibethinus HOM05D015147 ORTHO05D003197 2.7e-09 67.4 98 38.8
TWI36G1615 Tripterygium wilfordii HOM05D004095 ORTHO05D003197 3.5e-09 67.0 312 25.6
DCAR_009498 Daucus carota HOM05D004095 ORTHO05D003197 4.6e-09 66.6 170 39.4
Sabra05G0187500 Salix brachista HOM05D004095 ORTHO05D003197 4.6e-09 66.6 401 24.4
AT2G17787 Arabidopsis thaliana HOM05D004095 ORTHO05D003197 1.0e-08 65.5 383 28.2
AT4G35940 Arabidopsis thaliana HOM05D004095 ORTHO05D003197 1.0e-08 65.5 457 26.9
SalBow7G2790 Salvia bowleyana HOM05D004095 ORTHO05D003197 1.0e-08 65.5 447 25.7
FvH4_2g38160 Fragaria vesca HOM05D004095 ORTHO05D003197 2.3e-08 64.3 100 43.0
FAN15G2156 Fragaria x ananassa HOM05D004095 ORTHO05D003197 2.3e-08 64.3 79 48.1
Peaxi162Scf00064g00737 Petunia axillaris HOM05D004095 ORTHO05D003197 2.3e-08 64.3 160 39.4
C07p61450 Brassica napus HOM05D004095 ORTHO05D003197 3.0e-08 63.9 198 40.4
A09p11580 Brassica napus HOM05D004095 ORTHO05D003197 3.9e-08 63.5 388 23.2
Lalb_Chr08g0246191 Lupinus albus HOM05D004095 ORTHO05D003197 3.9e-08 63.5 388 25.3
Oeu007365.1 Olea europaea HOM05D004095 ORTHO05D003197 3.9e-08 63.5 327 25.1
SGA_v2.0_scaffold11G05941 Striga asiatica HOM05D004095 ORTHO05D003197 3.9e-08 63.5 386 26.2
Aa31LG6G12890 Aethionema arabicum HOM05D004095 ORTHO05D003197 8.7e-08 62.4 415 28.4
BraA09t36805Z Brassica rapa HOM05D004095 ORTHO05D003197 8.7e-08 62.4 389 24.9
Nitab4.5_0006505g0050 Nicotiana tabacum HOM05D004095 ORTHO05D003197 8.7e-08 62.4 437 28.6
EL10Ac3g06641 Beta vulgaris HOM05D004095 ORTHO05D003197 1.5e-07 61.6 224 34.4
COL.COLO4_17333 Corchorus olitorius HOM05D015147 ORTHO05D003197 1.5e-07 61.6 92 35.9
FAN20G0678 Fragaria x ananassa HOM05D004095 ORTHO05D003197 1.5e-07 61.6 79 46.8
Cpa.g.sc26.299 Carica papaya HOM05D004095 ORTHO05D003197 2.5e-07 60.8 92 35.9
Haze_02143 Corylus avellana HOM05D015147 ORTHO05D003197 2.5e-07 60.8 88 39.8
FAN27G1813 Fragaria x ananassa HOM05D004095 ORTHO05D003197 2.5e-07 60.8 82 45.1
CAN.G1517.6 Capsicum annuum HOM05D004095 ORTHO05D003197 4.3e-07 60.1 394 25.4
A01p02760 Brassica napus HOM05D004095 ORTHO05D003197 5.7e-07 59.7 410 29.0
BraA01t00262Z Brassica rapa HOM05D004095 ORTHO05D003197 7.4e-07 59.3 429 28.2
HanXRQChr12g0366821 Helianthus annuus HOM05D004095 ORTHO05D003197 7.4e-07 59.3 397 27.2
BcaC06g36322 Brassica carinata HOM05D004095 ORTHO05D003197 9.6e-07 58.9 392 24.7
BcaC08g47079 Brassica carinata HOM05D008819 ORTHO05D003197 9.6e-07 58.9 84 40.5
Hund01666 Selenicereus undatus HOM05D004095 ORTHO05D003197 9.6e-07 58.9 413 24.9
arahy.Tifrunner.gnm1.ann1.VNIF6J Arachis hypogaea HOM05D004095 ORTHO05D003197 1.3e-06 58.5 400 26.5
BolC7t46570H Brassica oleracea HOM05D004095 ORTHO05D003197 1.3e-06 58.5 210 38.1
Sed0007913 Sechium edule HOM05D004095 ORTHO05D003197 1.3e-06 58.5 80 40.0
unitig_0.g2088 Utricularia gibba HOM05D004095 ORTHO05D003197 1.3e-06 58.5 80 42.5
Thhalv10022767m.g Eutrema salsugineum HOM05D004095 ORTHO05D003197 1.6e-06 58.2 152 42.1
Dinv39538 Davidia involucrata HOM05D004095 ORTHO05D003197 2.1e-06 57.8 135 43.0
Potri.009G134800 Populus trichocarpa HOM05D015147 ORTHO05D003197 2.1e-06 57.8 391 24.6
BcaB07g31703 Brassica carinata HOM05D004095 ORTHO05D003197 3.7e-06 57.0 168 38.7
CARHR108180 Cardamine hirsuta HOM05D004095 ORTHO05D003197 3.7e-06 57.0 130 45.4
Thhalv10027062m.g Eutrema salsugineum HOM05D004095 ORTHO05D003197 4.8e-06 56.6 109 48.6
AUR62040566 Chenopodium quinoa HOM05D004095 ORTHO05D003197 6.2e-06 56.2 158 32.3
Duzib093G1456 Durio zibethinus HOM05D004095 ORTHO05D003197 6.2e-06 56.2 397 23.2
Potri.005G242300 Populus trichocarpa HOM05D004095 ORTHO05D003197 6.2e-06 56.2 121 36.4
Eucgr.H00956 Eucalyptus grandis HOM05D066110 ORTHO05D003197 8.2e-06 55.8 150 32.7
RcHm_v2.0_Chr6g0303321 Rosa chinensis HOM05D004095 ORTHO05D003197 8.2e-06 55.8 79 43.0


User provided reference genes

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