Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.7G170900 Prunus persica HOM05D007446 ORTHO05D009376 8.9e-60 233.4 119 100.0
MD02G1128000 Malus domestica HOM05D007446 ORTHO05D009376 2.7e-40 168.7 90 94.4
RcHm_v2.0_Chr2g0099131 Rosa chinensis HOM05D007446 ORTHO05D009376 1.5e-38 162.9 97 85.6
FvH4_1g11510 Fragaria vesca HOM05D007446 ORTHO05D009376 7.4e-38 160.6 90 90.0
GSVIVG01018747001 Vitis vinifera HOM05D007446 ORTHO05D009376 1.5e-35 152.9 85 88.2
ClCG01G020420 Citrullus lanatus HOM05D007446 ORTHO05D009376 2.0e-35 152.5 85 88.2
Manes.02G106000 Manihot esculenta HOM05D007446 ORTHO05D009376 7.6e-35 150.6 94 80.9
vmacro22147 Vaccinium macrocarpon HOM05D007446 ORTHO05D009376 7.6e-35 150.6 86 86.0
Actinidia17426 Actinidia chinensis HOM05D007446 ORTHO05D009376 1.0e-34 150.2 86 88.4
CiPaw.08G130000 Carya illinoinensis HOM05D007446 ORTHO05D009376 1.0e-34 150.2 85 89.4
FAN26G2670 Fragaria x ananassa HOM05D007446 ORTHO05D009376 1.0e-34 150.2 85 89.4
FAN23G0535 Fragaria x ananassa HOM05D000971 ORTHO05D000901 1.3e-34 149.8 84 88.1
Rhsim10G0209600 Rhododendron simsii HOM05D007446 ORTHO05D009376 1.3e-34 149.8 85 85.9
EL10Ac6g15495 Beta vulgaris HOM05D007446 ORTHO05D009376 3.8e-34 148.3 85 87.1
TWI09G0145 Tripterygium wilfordii HOM05D007446 ORTHO05D009376 4.9e-34 147.9 85 85.9
Hma1.2p1_0869F.1_g230750 Hydrangea macrophylla HOM05D007446 ORTHO05D009376 6.5e-34 147.5 84 86.9
Atru.chr3.842 Acer truncatum HOM05D007446 ORTHO05D009376 1.1e-33 146.7 85 84.7
TWI73G1016 Tripterygium wilfordii HOM05D007446 ORTHO05D009376 1.1e-33 146.7 85 84.7
Cc07_g11000 Coffea canephora HOM05D007446 ORTHO05D009376 1.4e-33 146.4 85 82.4
Potri.005G111900 Populus trichocarpa HOM05D007446 ORTHO05D009376 1.9e-33 146.0 85 87.1
Cpa.g.sc6.279 Carica papaya HOM05D007446 ORTHO05D009376 2.5e-33 145.6 85 85.9
Cfa006995 Carpinus fangiana HOM05D007446 ORTHO05D009376 2.5e-33 145.6 80 91.2
Haze_03737 Corylus avellana HOM05D007446 ORTHO05D009376 4.2e-33 144.8 80 90.0
Sabra05G0091700 Salix brachista HOM05D007446 ORTHO05D009376 5.5e-33 144.4 85 85.9
Duzib264G0432 Durio zibethinus HOM05D007446 ORTHO05D009376 7.1e-33 144.1 87 83.9
CSS0009543 Camellia sinensis var. sinensis HOM05D007446 ORTHO05D009376 9.3e-33 143.7 85 85.9
QL06p051006 Quercus lobata HOM05D007446 ORTHO05D009376 1.2e-32 143.3 81 87.7
Ciclev10026855m.g Citrus clementina HOM05D007446 ORTHO05D009376 2.7e-32 142.1 86 80.2
Lalb_Chr05g0229761 Lupinus albus HOM05D007446 ORTHO05D009376 2.7e-32 142.1 85 82.4
Thecc.01G015400 Theobroma cacao HOM05D007446 ORTHO05D009376 2.7e-32 142.1 85 83.5
AUR62003348 Chenopodium quinoa HOM05D007446 ORTHO05D009376 3.5e-32 141.7 85 84.7
Dinv40111 Davidia involucrata HOM05D007446 ORTHO05D009376 4.6e-32 141.4 79 87.3
CAN.G1817.7 Capsicum annuum HOM05D007446 ORTHO05D009376 6.0e-32 141.0 85 80.0
CsaV3_6G047300 Cucumis sativus L. HOM05D007446 ORTHO05D009376 6.0e-32 141.0 80 86.2
Lj4g0002006 Lotus japonicus HOM05D007446 ORTHO05D009376 7.9e-32 140.6 85 80.0
AUR62029488 Chenopodium quinoa HOM05D007446 ORTHO05D009376 1.0e-31 140.2 85 83.5
AUR62043833 Chenopodium quinoa HOM05D007446 ORTHO05D009376 1.0e-31 140.2 85 83.5
Carub.0007s0425 Capsella rubella HOM05D007446 ORTHO05D009376 1.3e-31 139.8 86 82.6
Gohir.D11G181100 Gossypium hirsutum HOM05D007446 ORTHO05D009376 1.8e-31 139.4 80 86.2
Gorai.007G193000 Gossypium raimondii HOM05D007446 ORTHO05D009376 1.8e-31 139.4 80 86.2
Aa31LG6G12930 Aethionema arabicum HOM05D007446 ORTHO05D009376 3.0e-31 138.7 86 82.6
Eucgr.J02461 Eucalyptus grandis HOM05D007446 ORTHO05D009376 3.0e-31 138.7 85 81.2
PGR119G1403 Punica granatum HOM05D007446 ORTHO05D009376 3.0e-31 138.7 85 81.2
A01p02730 Brassica napus HOM05D007446 ORTHO05D009376 3.9e-31 138.3 86 81.4
BolC1t00289H Brassica oleracea HOM05D007446 ORTHO05D009376 3.9e-31 138.3 86 81.4
ECA232G4023 Erigeron canadensis HOM05D007446 ORTHO05D009376 5.1e-31 137.9 85 78.8
Sp7g33750 Schrenkiella parvula HOM05D007446 ORTHO05D009376 5.1e-31 137.9 86 81.4
Hund14058 Selenicereus undatus HOM05D007446 ORTHO05D009376 5.1e-31 137.9 85 76.5
AL7G15070 Arabidopsis lyrata HOM05D007446 ORTHO05D009376 6.7e-31 137.5 86 81.4
CAN.G1274.24 Capsicum annuum HOM05D007446 ORTHO05D009376 6.7e-31 137.5 85 78.8
arahy.Tifrunner.gnm1.ann1.786IJB Arachis hypogaea HOM05D007446 ORTHO05D009376 1.1e-30 136.7 81 84.0
arahy.Tifrunner.gnm1.ann1.RW313X Arachis hypogaea HOM05D007446 ORTHO05D009376 1.1e-30 136.7 81 84.0
C01p03030 Brassica napus HOM05D007446 ORTHO05D009376 1.1e-30 136.7 86 80.2
Thhalv10026680m.g Eutrema salsugineum HOM05D007446 ORTHO05D009376 1.1e-30 136.7 86 81.4
SalBow3G1068 Salvia bowleyana HOM05D007446 ORTHO05D009376 1.1e-30 136.7 83 79.5
BcaNung00774 Brassica carinata HOM05D007446 ORTHO05D009376 1.5e-30 136.3 86 80.2
BraA01t00259Z Brassica rapa HOM05D007446 ORTHO05D009376 1.5e-30 136.3 86 80.2
CANSAT25G1207 Cannabis sativa HOM05D007446 ORTHO05D009376 1.5e-30 136.3 89 79.8
THA.LOC104804270 Tarenaya hassleriana HOM05D007446 ORTHO05D009376 1.9e-30 136.0 86 81.4
AT4G35980 Arabidopsis thaliana HOM05D007446 ORTHO05D009376 2.5e-30 135.6 85 78.8
Peaxi162Scf00328g00716 Petunia axillaris HOM05D007446 ORTHO05D009376 4.3e-30 134.8 85 78.8
Sopen02g028430 Solanum pennellii HOM05D007446 ORTHO05D009376 4.3e-30 134.8 85 78.8
Solyc02g083650.3 Solanum lycopersicum HOM05D007446 ORTHO05D009376 5.7e-30 134.4 85 78.8
PGSC0003DMG400003579 Solanum tuberosum HOM05D007446 ORTHO05D009376 5.7e-30 134.4 85 78.8
HanXRQChr09g0256761 Helianthus annuus HOM05D007446 ORTHO05D009376 9.6e-30 133.7 85 74.1
FAN28G0109 Fragaria x ananassa HOM05D000971 ORTHO05D000901 2.1e-29 132.5 75 88.0
FAN19G2392 Fragaria x ananassa HOM05D000971 ORTHO05D000901 3.7e-29 131.7 73 89.0
Ah.03g149050 Amaranthus hybridus HOM05D007446 ORTHO05D009376 1.4e-28 129.8 85 76.5
Migut.H02175 Erythranthe guttata HOM05D007446 ORTHO05D009376 3.1e-28 128.6 85 80.0
SGA_v2.0_scaffold74G24537 Striga asiatica HOM05D007446 ORTHO05D009376 9.0e-28 127.1 82 78.0
MELO3C007921.2 Cucumis melo HOM05D007446 ORTHO05D009376 2.6e-27 125.6 68 89.7
Lsat_1_v5_gn_4_145721 Lactuca sativa HOM05D007446 ORTHO05D009376 3.4e-27 125.2 86 74.4
Glyma.16G124800 Glycine max HOM05D007446 ORTHO05D009376 5.8e-27 124.4 86 74.4
TPR.G19502 Trifolium pratense HOM05D007446 ORTHO05D009376 2.9e-26 122.1 86 74.4
Psat4g101880 Pisum sativum HOM05D007446 ORTHO05D009376 5.0e-26 121.3 85 70.6
Nn7g37082 Nelumbo nucifera HOM05D007446 ORTHO05D009376 8.4e-26 120.6 81 75.3
Phvul.003G264800 Phaseolus vulgaris HOM05D007446 ORTHO05D009376 2.5e-25 119.0 84 69.0
Sed0007439 Sechium edule HOM05D007446 ORTHO05D009376 3.2e-25 118.6 68 85.3
MD15G1243200 Malus domestica HOM05D007446 ORTHO05D009376 4.2e-25 118.2 65 90.8
Psat4g101720 Pisum sativum HOM05D007446 ORTHO05D009376 5.5e-25 117.9 85 69.4
Medtr8g075290 Medicago truncatula HOM05D007446 ORTHO05D009376 9.3e-25 117.1 86 68.6
Sc07g0001100 Simmondsia chinensis HOM05D007446 ORTHO05D009376 9.3e-25 117.1 72 77.8
Sc07g0001150 Simmondsia chinensis HOM05D007446 ORTHO05D009376 3.5e-24 115.2 72 77.8
TPR.G25793 Trifolium pratense HOM05D000002 ORTHO05D000001 3.5e-24 115.2 83 73.5
TAR636G2489 Trochodendron aralioides HOM05D007446 ORTHO05D009376 4.6e-24 114.8 81 70.4
Nitab4.5_0001658g0040 Nicotiana tabacum HOM05D007446 ORTHO05D009376 6.7e-23 110.9 68 79.4
THA.LOC109115992 Tarenaya hassleriana HOM05D007446 ORTHO05D009376 1.1e-22 110.2 80 71.2
unitig_899.g14718 Utricularia gibba HOM05D007446 ORTHO05D009376 9.7e-22 107.1 81 70.4
Nitab4.5_0001892g0060 Nicotiana tabacum HOM05D007446 ORTHO05D009376 1.6e-21 106.3 68 76.5
DCAR_023140 Daucus carota HOM05D000372 ORTHO05D004502 6.3e-21 104.4 80 68.8
Gorai.007G317400 Gossypium raimondii HOM05D007446 ORTHO05D009376 1.4e-20 103.2 74 75.7
Gohir.D11G294266 Gossypium hirsutum HOM05D007446 ORTHO05D009376 4.1e-20 101.7 76 72.4
Oeu007438.1 Olea europaea HOM05D007446 ORTHO05D009376 5.3e-20 101.3 60 81.7
ATR0681G038 Amborella trichopoda HOM05D007446 ORTHO05D009376 2.0e-19 99.4 80 61.2
DCAR_011601 Daucus carota HOM05D007446 ORTHO05D009376 2.6e-19 99.0 80 66.2
Gohir.A11G174000 Gossypium hirsutum HOM05D007446 ORTHO05D009376 3.4e-19 98.6 62 79.0
Oeu054756.1 Olea europaea HOM05D007446 ORTHO05D009376 3.4e-19 98.6 60 80.0
Os05g0352800 Oryza sativa ssp. japonica HOM05D007446 ORTHO05D009376 5.9e-19 97.8 74 67.6
HPP92_012021 Vanilla planifolia HOM05D007446 ORTHO05D009376 1.9e-17 92.8 82 57.3
PGSC0003DMG400022557 Solanum tuberosum HOM05D007446 ORTHO05D009376 1.4e-15 86.7 60 75.0
SalBow3G4512 Salvia bowleyana HOM05D007446 ORTHO05D009376 5.1e-15 84.7 56 75.0
Glyma.02G046300 Glycine max HOM05D007446 ORTHO05D009376 9.7e-14 80.5 52 73.1
Psat0s2733g0120 Pisum sativum HOM05D007446 ORTHO05D009376 1.7e-13 79.7 85 52.9
Mapoly0007s0006 Marchantia polymorpha HOM05D007446 ORTHO05D009376 1.4e-12 76.6 114 42.1
Actinidia22956 Actinidia chinensis HOM05D007446 ORTHO05D009376 2.4e-12 75.9 86 58.1
Pp3c23_18910 Physcomitrium patens HOM05D007446 ORTHO05D009376 2.0e-11 72.8 80 47.5
Zm00001eb428230 Zea mays HOM05D007446 ORTHO05D009376 1.1e-09 67.0 57 63.2
AagrBONN_evm.TU.Sc2ySwM_228.3577 Anthoceros agrestis HOM05D007446 ORTHO05D009376 6.1e-08 61.2 80 42.5
TAR369G0162 Trochodendron aralioides HOM05D002795 ORTHO05D000638 1.8e-07 59.7 38 73.7


User provided reference genes

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