Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.7G166600 Prunus persica HOM05D005734 ORTHO05D006990 4.8e-88 328.2 212 100.0
MD15G1247200 Malus domestica HOM05D005734 ORTHO05D006990 6.2e-72 274.6 214 72.4
MD02G1134200 Malus domestica HOM05D005734 ORTHO05D006990 7.6e-70 267.7 214 71.5
RcHm_v2.0_Chr2g0099641 Rosa chinensis HOM05D005734 ORTHO05D006990 3.5e-67 258.8 213 68.1
FvH4_1g12000 Fragaria vesca HOM05D005734 ORTHO05D006990 1.3e-66 256.9 213 67.1
FAN19G0086 Fragaria x ananassa HOM05D005734 ORTHO05D006990 1.3e-66 256.9 213 67.1
FAN26G0019 Fragaria x ananassa HOM05D005734 ORTHO05D006990 2.5e-65 252.7 211 78.2
QL06p033653 Quercus lobata HOM05D005734 ORTHO05D006990 2.5e-65 252.7 207 66.2
Lalb_Chr16g0391171 Lupinus albus HOM05D005734 ORTHO05D006990 6.2e-64 248.1 198 68.2
Thecc.01G021200 Theobroma cacao HOM05D005734 ORTHO05D006990 2.4e-63 246.1 213 65.7
GSVIVG01018804001 Vitis vinifera HOM05D005734 ORTHO05D006990 2.4e-63 246.1 209 70.8
Glyma.11G075600 Glycine max HOM05D005734 ORTHO05D006990 4.5e-62 241.9 207 64.3
Sabra07G0011400 Salix brachista HOM05D005734 ORTHO05D006990 2.2e-61 239.6 213 65.3
Cc07_g10570 Coffea canephora HOM05D005734 ORTHO05D006990 5.0e-61 238.4 190 69.5
Phvul.002G110400 Phaseolus vulgaris HOM05D005734 ORTHO05D006990 6.5e-61 238.0 207 63.3
TAR376G0390 Trochodendron aralioides HOM05D005734 ORTHO05D006990 8.4e-61 237.7 210 63.8
VMungo1215G0268 Vigna mungo HOM05D005734 ORTHO05D006990 2.5e-60 236.1 207 63.3
Ca_24908_v3 Cicer arietinum L. HOM05D005734 ORTHO05D006990 3.2e-60 235.7 207 62.3
COL.COLO4_21933 Corchorus olitorius HOM05D005734 ORTHO05D006990 3.2e-60 235.7 215 62.8
Eucgr.K02152 Eucalyptus grandis HOM05D005734 ORTHO05D006990 5.5e-60 235.0 209 64.6
TPR.G2344 Trifolium pratense HOM05D005734 ORTHO05D006990 5.5e-60 235.0 207 61.8
Ciclev10026469m.g Citrus clementina HOM05D005734 ORTHO05D006990 7.2e-60 234.6 215 64.2
CiPaw.08G133400 Carya illinoinensis HOM05D005734 ORTHO05D006990 1.2e-59 233.8 200 66.5
Lj2C466G2 Lonicera japonica HOM05D005734 ORTHO05D006990 1.2e-59 233.8 197 68.5
Glyma.01G167600 Glycine max HOM05D005734 ORTHO05D006990 2.7e-59 232.6 207 62.3
TAR628G0339 Trochodendron aralioides HOM05D005734 ORTHO05D006990 4.6e-59 231.9 211 61.6
TWI73G0895 Tripterygium wilfordii HOM05D005734 ORTHO05D006990 6.1e-59 231.5 208 62.0
Dinv33615 Davidia involucrata HOM05D005734 ORTHO05D006990 1.3e-58 230.3 212 61.3
Potri.005G116300 Populus trichocarpa HOM05D005734 ORTHO05D006990 1.3e-58 230.3 198 65.2
TWI09G0878 Tripterygium wilfordii HOM05D005734 ORTHO05D006990 1.3e-58 230.3 207 63.8
Medtr5g021750 Medicago truncatula HOM05D005734 ORTHO05D006990 1.8e-58 229.9 196 63.8
Psat2g155360 Pisum sativum HOM05D005734 ORTHO05D006990 1.8e-58 229.9 207 61.4
Solyc02g084220.3 Solanum lycopersicum HOM05D005734 ORTHO05D006990 2.3e-58 229.6 192 65.6
Manes.02G102700 Manihot esculenta HOM05D005734 ORTHO05D006990 3.9e-58 228.8 217 62.7
Lj2g0025294 Lotus japonicus HOM05D005734 ORTHO05D006990 1.5e-57 226.9 209 63.6
Rhsim08G0034500 Rhododendron simsii HOM05D005734 ORTHO05D006990 1.5e-57 226.9 192 65.6
Sopen02g028960 Solanum pennellii HOM05D005734 ORTHO05D006990 1.5e-57 226.9 192 65.1
ClCG07G008420 Citrullus lanatus HOM05D005734 ORTHO05D006990 5.7e-57 224.9 214 60.7
Duzib147G0754 Durio zibethinus HOM05D005734 ORTHO05D006990 9.7e-57 224.2 213 61.5
Sabra05G0095300 Salix brachista HOM05D005734 ORTHO05D006990 1.3e-56 223.8 188 66.5
Cfa006957 Carpinus fangiana HOM05D005734 ORTHO05D006990 3.7e-56 222.2 211 73.0
Nitab4.5_0005721g0110 Nicotiana tabacum HOM05D005734 ORTHO05D006990 6.3e-56 221.5 202 62.9
Gorai.003G010600 Gossypium raimondii HOM05D005734 ORTHO05D006990 8.2e-56 221.1 213 59.2
Nitab4.5_0004254g0030 Nicotiana tabacum HOM05D005734 ORTHO05D006990 8.2e-56 221.1 202 62.4
Actinidia31004 Actinidia chinensis HOM05D005734 ORTHO05D006990 1.1e-55 220.7 191 65.4
arahy.Tifrunner.gnm1.ann1.GC558H Arachis hypogaea HOM05D005734 ORTHO05D006990 4.1e-55 218.8 187 63.6
Peaxi162Scf00083g00086 Petunia axillaris HOM05D005734 ORTHO05D006990 4.1e-55 218.8 198 61.6
SalBow3G4629 Salvia bowleyana HOM05D005734 ORTHO05D006990 4.1e-55 218.8 187 63.6
Gohir.D03G010200 Gossypium hirsutum HOM05D005734 ORTHO05D006990 5.3e-55 218.4 213 58.2
Sed0005630 Sechium edule HOM05D005734 ORTHO05D006990 5.3e-55 218.4 214 59.3
DCAR_017347 Daucus carota HOM05D005734 ORTHO05D006990 9.0e-55 217.6 197 62.4
MSTRG.2698 Avicennia marina HOM05D005734 ORTHO05D006990 1.2e-54 217.2 187 63.1
CsaV3_4G005730 Cucumis sativus L. HOM05D005734 ORTHO05D006990 2.0e-54 216.5 214 59.8
PGSC0003DMG400003554 Solanum tuberosum HOM05D005734 ORTHO05D006990 3.4e-54 215.7 218 58.3
Nn6g32291 Nelumbo nucifera HOM05D005734 ORTHO05D006990 4.5e-54 215.3 185 62.7
Gohir.A02G169800 Gossypium hirsutum HOM05D005734 ORTHO05D006990 5.9e-54 214.9 213 58.2
CSS0031169 Camellia sinensis var. sinensis HOM05D005734 ORTHO05D006990 6.5e-53 211.5 193 63.7
QL06p033647 Quercus lobata HOM05D005734 ORTHO05D006990 6.5e-53 211.5 137 78.1
EL10Ac3g07303 Beta vulgaris HOM05D005734 ORTHO05D006990 8.5e-53 211.1 191 60.7
Migut.H01144 Erythranthe guttata HOM05D005734 ORTHO05D006990 1.4e-52 210.3 207 58.9
PSO210G7806 Papaver somniferum HOM05D005734 ORTHO05D006990 2.7e-51 206.1 200 60.0
AL8G45230 Arabidopsis lyrata HOM05D005734 ORTHO05D006990 6.1e-51 204.9 187 59.4
Thhalv10004735m.g Eutrema salsugineum HOM05D005734 ORTHO05D006990 6.1e-51 204.9 187 59.9
THA.LOC104819182 Tarenaya hassleriana HOM05D005734 ORTHO05D006990 1.0e-50 204.1 186 60.2
Ah.03g141620 Amaranthus hybridus HOM05D005734 ORTHO05D006990 1.4e-50 203.8 208 59.1
AT5G66290 Arabidopsis thaliana HOM05D005734 ORTHO05D006990 1.8e-50 203.4 186 58.6
Aa31LG1G14770 Aethionema arabicum HOM05D005734 ORTHO05D006990 6.7e-50 201.4 187 59.4
Carub.0008s2820 Capsella rubella HOM05D005734 ORTHO05D006990 6.7e-50 201.4 187 58.3
Sp2g30330 Schrenkiella parvula HOM05D005734 ORTHO05D006990 6.7e-50 201.4 188 59.0
Hund14038 Selenicereus undatus HOM05D005734 ORTHO05D006990 4.3e-49 198.7 228 52.2
Aqoxy4G02673 Aquilegia oxysepala HOM05D005734 ORTHO05D006990 7.4e-49 198.0 226 52.7
Aqoxy4G02678 Aquilegia oxysepala HOM05D005734 ORTHO05D006990 9.7e-49 197.6 227 52.4
vmacro18422 Vaccinium macrocarpon HOM05D005734 ORTHO05D006990 2.2e-48 196.4 237 51.1
RcHm_v2.0_Chr5g0080231 Rosa chinensis HOM05D005734 ORTHO05D006990 4.1e-47 192.2 122 80.3
ECA246G4348 Erigeron canadensis HOM05D000013 ORTHO05D000011 6.9e-47 191.4 213 53.1
arahy.Tifrunner.gnm1.ann1.DFQ3ES Arachis hypogaea HOM05D005734 ORTHO05D006990 9.1e-47 191.0 120 76.7
RcHm_v2.0_Chr0c39g0503221 Rosa chinensis HOM05D005734 ORTHO05D006990 9.1e-47 191.0 122 79.5
RcHm_v2.0_Chr1g0353231 Rosa chinensis HOM05D005734 ORTHO05D006990 9.1e-47 191.0 122 79.5
BcaB02g10036 Brassica carinata HOM05D005734 ORTHO05D006990 2.6e-46 189.5 191 55.5
A07p17570 Brassica napus HOM05D005734 ORTHO05D006990 2.6e-46 189.5 197 54.8
CSS0012385 Camellia sinensis var. sinensis HOM05D005734 ORTHO05D006990 4.5e-46 188.7 120 78.3
Lsat_1_v5_gn_3_73980 Lactuca sativa HOM05D005734 ORTHO05D006990 4.5e-46 188.7 193 59.1
Atru.chr3.782 Acer truncatum HOM05D005734 ORTHO05D006990 7.7e-46 188.0 188 57.4
BcaC06g34694 Brassica carinata HOM05D005734 ORTHO05D006990 1.0e-45 187.6 187 56.1
C07p25530 Brassica napus HOM05D005734 ORTHO05D006990 1.0e-45 187.6 187 56.1
BolC7t43073H Brassica oleracea HOM05D005734 ORTHO05D006990 1.0e-45 187.6 187 56.1
CSS0021905 Camellia sinensis var. sinensis HOM05D005734 ORTHO05D006990 1.3e-45 187.2 120 77.5
Cpa.g.sc6.229 Carica papaya HOM05D005734 ORTHO05D006990 1.7e-45 186.8 213 53.1
Gohir.A12G060300 Gossypium hirsutum HOM05D005734 ORTHO05D006990 5.0e-45 185.3 192 56.8
ATR0147G004 Amborella trichopoda HOM05D005734 ORTHO05D006990 1.9e-44 183.3 184 54.9
BcaNung04509 Brassica carinata HOM05D005734 ORTHO05D006990 3.2e-44 182.6 191 54.5
HanXRQChr16g0531031 Helianthus annuus HOM05D005734 ORTHO05D006990 3.2e-44 182.6 189 56.6
BcaC04g23120 Brassica carinata HOM05D005734 ORTHO05D006990 4.2e-44 182.2 190 54.7
BcaC04g23124 Brassica carinata HOM05D005734 ORTHO05D006990 4.2e-44 182.2 190 54.7
BcaNung05273 Brassica carinata HOM05D005734 ORTHO05D006990 4.2e-44 182.2 190 54.7
AUR62018084 Chenopodium quinoa HOM05D005734 ORTHO05D006990 4.2e-44 182.2 131 71.8
SGA_v2.0_scaffold137G35098 Striga asiatica HOM05D005734 ORTHO05D006990 4.2e-44 182.2 115 80.0
HPP92_018404 Vanilla planifolia HOM05D005734 ORTHO05D006990 5.5e-44 181.8 189 55.0
CARHR281420 Cardamine hirsuta HOM05D005734 ORTHO05D006990 1.2e-43 180.6 118 74.6
A09p10030 Brassica napus HOM05D005734 ORTHO05D006990 2.7e-43 179.5 200 50.5
Sc16g0002040 Simmondsia chinensis HOM05D005734 ORTHO05D006990 2.7e-43 179.5 113 79.6
Nn5g29268 Nelumbo nucifera HOM05D005734 ORTHO05D006990 3.6e-43 179.1 208 52.9
C09p11890 Brassica napus HOM05D005734 ORTHO05D006990 1.8e-42 176.8 172 55.8
BolC9t54077H Brassica oleracea HOM05D005734 ORTHO05D006990 1.8e-42 176.8 172 55.8
MBI05_g26512_MAGBIO Magnolia biondii HOM05D005734 ORTHO05D006990 1.8e-42 176.8 193 52.8
Os03g0727100 Oryza sativa ssp. japonica HOM05D005734 ORTHO05D006990 1.8e-42 176.8 210 52.4
Zm00001eb055930 Zea mays HOM05D005734 ORTHO05D006990 1.8e-42 176.8 204 52.5
HanXRQChr15g0482851 Helianthus annuus HOM05D005734 ORTHO05D006990 5.1e-42 175.3 189 55.0
Lsat_1_v5_gn_4_152781 Lactuca sativa HOM05D005734 ORTHO05D006990 1.1e-41 174.1 178 55.6
unitig_699.g19712 Utricularia gibba HOM05D005734 ORTHO05D006990 2.2e-40 169.9 185 53.0
ATR0876G001 Amborella trichopoda HOM05D005734 ORTHO05D006990 4.8e-40 168.7 114 68.4
FAN23G1819 Fragaria x ananassa HOM05D005734 ORTHO05D006990 1.4e-39 167.2 213 53.5
Potri.007G014000 Populus trichocarpa HOM05D005734 ORTHO05D006990 3.1e-31 139.4 136 60.3
CDE11G0627 Ceratophyllum demersum HOM05D005734 ORTHO05D006990 9.1e-31 137.9 102 65.7
Sc18g0002570 Simmondsia chinensis HOM05D005734 ORTHO05D006990 1.2e-30 137.5 85 81.2
Sc16g0006390 Simmondsia chinensis HOM05D005734 ORTHO05D006990 5.9e-30 135.2 90 76.7
Sc09g0006730 Simmondsia chinensis HOM05D005734 ORTHO05D006990 1.5e-28 130.6 90 74.4
MELO3C016376.2 Cucumis melo HOM05D005734 ORTHO05D006990 2.5e-28 129.8 137 56.9
BraA09t36646Z Brassica rapa HOM05D005734 ORTHO05D006990 4.1e-23 112.5 96 61.5
RcHm_v2.0_Chr2g0126361 Rosa chinensis HOM05D005734 ORTHO05D006990 7.7e-22 108.2 68 79.4
Haze_03794 Corylus avellana HOM05D005734 ORTHO05D006990 2.9e-21 106.3 67 80.6
PSO170G3799 Papaver somniferum HOM05D005734 ORTHO05D006990 2.9e-21 106.3 122 54.1
Pp3c1_42750 Physcomitrium patens HOM05D005734 ORTHO05D006990 7.2e-20 101.7 180 35.0
Lsat_1_v5_gn_4_38760 Lactuca sativa HOM05D005734 ORTHO05D006990 1.2e-17 94.4 121 52.1
Mapoly0166s0009 Marchantia polymorpha HOM05D005734 ORTHO05D006990 3.4e-17 92.8 181 32.0
Gorai.008G063500 Gossypium raimondii HOM05D005734 ORTHO05D006990 4.4e-17 92.4 113 51.3
FAN28G1963 Fragaria x ananassa HOM05D005734 ORTHO05D006990 9.8e-17 91.3 99 54.5
SMO228G0004 Selaginella moellendorffii HOM05D005734 ORTHO05D006990 9.8e-17 91.3 108 40.7
Lj2C474G2 Lonicera japonica HOM05D005734 ORTHO05D006990 1.7e-16 90.5 62 75.8
Pp3c14_25740 Physcomitrium patens HOM05D005734 ORTHO05D006990 3.1e-15 86.3 207 31.4
CDE05G1720 Ceratophyllum demersum HOM05D005734 ORTHO05D006990 9.5e-12 74.7 148 37.8
Lj2A474G36 Lonicera japonica HOM05D005734 ORTHO05D006990 3.0e-10 69.7 146 37.0
Medtr5g021780 Medicago truncatula HOM05D005734 ORTHO05D006990 8.9e-10 68.2 82 43.9
Eucgr.L03507 Eucalyptus grandis HOM05D005734 ORTHO05D006990 4.4e-09 65.9 82 80.5
Gohir.D12G060400 Gossypium hirsutum HOM05D005734 ORTHO05D006990 2.9e-08 63.2 42 76.2
AagrBONN_evm.TU.Sc2ySwM_117.481 Anthoceros agrestis HOM05D005734 ORTHO05D006990 2.4e-07 60.1 140 30.7
HanXRQChr04g0110971 Helianthus annuus HOM05D000316 ORTHO05D012803 2.0e-06 57.0 63 54.0


User provided reference genes

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