Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.7G156300 Prunus persica HOM05D005644 ORTHO05D007092 5.8e-109 397.5 193 100.0
MD02G1145400 Malus domestica HOM05D005644 ORTHO05D007092 1.0e-105 386.7 193 96.4
TWI73G0320 Tripterygium wilfordii HOM05D005644 ORTHO05D007092 5.8e-101 370.9 193 92.7
Potri.005G121700 Populus trichocarpa HOM05D005644 ORTHO05D007092 2.9e-100 368.6 193 91.7
Gohir.A02G166400 Gossypium hirsutum HOM05D005644 ORTHO05D007092 3.8e-100 368.2 193 92.2
RcHm_v2.0_Chr2g0101251 Rosa chinensis HOM05D005644 ORTHO05D007092 4.9e-100 367.9 193 92.7
Gohir.D03G013600 Gossypium hirsutum HOM05D005644 ORTHO05D007092 6.4e-100 367.5 193 92.2
Gorai.003G013900 Gossypium raimondii HOM05D005644 ORTHO05D007092 6.4e-100 367.5 193 92.2
Potri.007G023500 Populus trichocarpa HOM05D005644 ORTHO05D007092 8.4e-100 367.1 193 91.2
Lalb_Chr09g0333481 Lupinus albus HOM05D005644 ORTHO05D007092 1.9e-99 365.9 193 90.7
Manes.02G095200 Manihot esculenta HOM05D005644 ORTHO05D007092 1.9e-99 365.9 193 91.7
MELO3C026580.2 Cucumis melo HOM05D005644 ORTHO05D007092 4.2e-99 364.8 193 90.2
Thecc.01G033400 Theobroma cacao HOM05D005644 ORTHO05D007092 4.2e-99 364.8 193 91.7
QL06p046522 Quercus lobata HOM05D005644 ORTHO05D007092 5.4e-99 364.4 192 90.6
CiPaw.02G018800 Carya illinoinensis HOM05D005644 ORTHO05D007092 7.1e-99 364.0 193 90.2
Manes.01G136400 Manihot esculenta HOM05D005644 ORTHO05D007092 7.1e-99 364.0 193 90.7
CANSAT01G2444 Cannabis sativa HOM05D005644 ORTHO05D007092 1.2e-98 363.2 193 90.2
Eucgr.I02428 Eucalyptus grandis HOM05D005644 ORTHO05D007092 1.2e-98 363.2 193 90.2
Ciclev10022394m.g Citrus clementina HOM05D005644 ORTHO05D007092 2.1e-98 362.5 193 90.2
CsaV3_3G042790 Cucumis sativus L. HOM05D005644 ORTHO05D007092 2.1e-98 362.5 193 89.6
Duzib264G1010 Durio zibethinus HOM05D005644 ORTHO05D007092 2.1e-98 362.5 193 90.7
Psat4g094240 Pisum sativum HOM05D005644 ORTHO05D007092 2.7e-98 362.1 193 89.6
TAR101G0001 Trochodendron aralioides HOM05D005644 ORTHO05D007092 2.7e-98 362.1 193 90.7
arahy.Tifrunner.gnm1.ann1.59MT2Q Arachis hypogaea HOM05D005644 ORTHO05D007092 4.6e-98 361.3 193 89.1
Phvul.003G254800 Phaseolus vulgaris HOM05D005644 ORTHO05D007092 4.6e-98 361.3 193 89.1
Lj2A454T58 Lonicera japonica HOM05D005644 ORTHO05D007092 6.0e-98 360.9 193 91.7
FvH4_1g13080 Fragaria vesca HOM05D005644 ORTHO05D007092 7.9e-98 360.5 190 92.1
Sed0008907 Sechium edule HOM05D005644 ORTHO05D007092 7.9e-98 360.5 193 89.1
Glyma.16G138200 Glycine max HOM05D005644 ORTHO05D007092 1.0e-97 360.1 193 89.1
GSVIVG01018941001 Vitis vinifera HOM05D005644 ORTHO05D007092 1.8e-97 359.4 193 90.7
vmacro17823 Vaccinium macrocarpon HOM05D005644 ORTHO05D007092 3.0e-97 358.6 194 91.2
Dinv39995 Davidia involucrata HOM05D005644 ORTHO05D007092 3.9e-97 358.2 190 92.6
Nn1g04949 Nelumbo nucifera HOM05D005644 ORTHO05D007092 5.1e-97 357.8 193 90.2
Atru.chr7.2312 Acer truncatum HOM05D005644 ORTHO05D007092 8.7e-97 357.1 191 89.0
Medtr8g077200 Medicago truncatula HOM05D005644 ORTHO05D007092 1.1e-96 356.7 193 88.6
arahy.Tifrunner.gnm1.ann1.SR5TCU Arachis hypogaea HOM05D005644 ORTHO05D007092 1.9e-96 355.9 190 88.9
SalBow5G1882 Salvia bowleyana HOM05D005644 ORTHO05D007092 1.9e-96 355.9 190 90.5
Ca_22319_v3 Cicer arietinum L. HOM05D005644 ORTHO05D007092 2.5e-96 355.5 193 88.1
Cc07_g09670 Coffea canephora HOM05D005644 ORTHO05D007092 3.3e-96 355.1 190 90.5
Oeu050374.1 Olea europaea HOM05D005644 ORTHO05D007092 4.3e-96 354.8 190 90.5
MSTRG.3592 Avicennia marina HOM05D005644 ORTHO05D007092 2.8e-95 352.1 190 88.9
Solyc02g062680.3 Solanum lycopersicum HOM05D005644 ORTHO05D007092 2.8e-95 352.1 190 90.0
Sopen02g013700 Solanum pennellii HOM05D005644 ORTHO05D007092 2.8e-95 352.1 190 90.0
AT2G18290 Arabidopsis thaliana HOM05D005644 ORTHO05D007092 8.1e-95 350.5 193 85.5
AL3G51550 Arabidopsis lyrata HOM05D005644 ORTHO05D007092 1.1e-94 350.1 193 85.5
PGSC0003DMG400015483 Solanum tuberosum HOM05D005644 ORTHO05D007092 1.1e-94 350.1 190 89.5
ClCG10G013900 Citrullus lanatus HOM05D005644 ORTHO05D007092 3.1e-94 348.6 219 78.5
PGR031G1764 Punica granatum HOM05D005644 ORTHO05D007092 3.1e-94 348.6 197 86.3
Glyma.02G055400 Glycine max HOM05D005644 ORTHO05D007092 4.0e-94 348.2 193 87.6
Migut.L00368 Erythranthe guttata HOM05D005644 ORTHO05D007092 5.3e-94 347.8 190 87.4
Migut.L00376 Erythranthe guttata HOM05D005644 ORTHO05D007092 5.3e-94 347.8 190 87.4
PSO541G0643 Papaver somniferum HOM05D005644 ORTHO05D007092 5.3e-94 347.8 193 86.0
Lj4g0022669 Lotus japonicus HOM05D005644 ORTHO05D007092 6.9e-94 347.4 194 86.1
THA.LOC104819776 Tarenaya hassleriana HOM05D005644 ORTHO05D007092 9.0e-94 347.1 193 86.0
PSO675G1163 Papaver somniferum HOM05D005644 ORTHO05D007092 1.2e-93 346.7 193 85.0
Aa31LG8G15730 Aethionema arabicum HOM05D005644 ORTHO05D007092 2.0e-93 345.9 193 85.0
Carub.0003s3246 Capsella rubella HOM05D005644 ORTHO05D007092 2.0e-93 345.9 193 84.5
Sp3g31700 Schrenkiella parvula HOM05D005644 ORTHO05D007092 2.6e-93 345.5 193 84.5
SGA_v2.0_scaffold44G16541 Striga asiatica HOM05D005644 ORTHO05D007092 4.5e-93 344.7 190 87.4
CAN.G53.17 Capsicum annuum HOM05D005644 ORTHO05D007092 5.8e-93 344.4 190 87.4
Hund21503 Selenicereus undatus HOM05D005644 ORTHO05D007092 5.8e-93 344.4 193 85.5
EL10Ac4g07935 Beta vulgaris HOM05D005644 ORTHO05D007092 7.6e-93 344.0 193 85.5
BcaB08g34803 Brassica carinata HOM05D005644 ORTHO05D007092 7.6e-93 344.0 193 83.9
A06p33310 Brassica napus HOM05D005644 ORTHO05D007092 1.3e-92 343.2 193 83.9
C03p59070 Brassica napus HOM05D005644 ORTHO05D007092 1.3e-92 343.2 193 83.9
BolC3t18168H Brassica oleracea HOM05D005644 ORTHO05D007092 1.3e-92 343.2 193 83.9
Oeu002799.2 Olea europaea HOM05D005644 ORTHO05D007092 1.3e-92 343.2 190 87.9
FvH4_5g29620 Fragaria vesca HOM05D005644 ORTHO05D007092 1.7e-92 342.8 190 88.4
Thhalv10022866m.g Eutrema salsugineum HOM05D005644 ORTHO05D007092 3.8e-92 341.7 193 83.9
HanXRQChr09g0261331 Helianthus annuus HOM05D005644 ORTHO05D007092 4.9e-92 341.3 193 85.0
Sc16g0002690 Simmondsia chinensis HOM05D005644 ORTHO05D007092 2.5e-91 339.0 193 83.9
ECA232G0363 Erigeron canadensis HOM05D005644 ORTHO05D007092 3.2e-91 338.6 193 83.9
Lsat_1_v5_gn_4_151201 Lactuca sativa HOM05D005644 ORTHO05D007092 3.2e-91 338.6 182 90.1
TPR.G24098 Trifolium pratense HOM05D005644 ORTHO05D007092 7.1e-91 337.4 232 73.3
unitig_37.g12363 Utricularia gibba HOM05D005644 ORTHO05D007092 9.3e-91 337.0 190 85.3
PGR083G1765 Punica granatum HOM05D005644 ORTHO05D007092 3.5e-90 335.1 193 83.4
THA.LOC104804235 Tarenaya hassleriana HOM05D005644 ORTHO05D007092 6.0e-90 334.3 193 84.5
Aqoxy6G01133 Aquilegia oxysepala HOM05D005644 ORTHO05D007092 7.9e-90 334.0 193 82.9
MBI02_g12270_MAGBIO Magnolia biondii HOM05D005644 ORTHO05D007092 1.3e-89 333.2 210 79.0
Rhsim11G0151400 Rhododendron simsii HOM05D005644 ORTHO05D007092 1.8e-89 332.8 247 71.7
Zm00001eb342630 Zea mays HOM05D005644 ORTHO05D007092 1.5e-88 329.7 177 87.0
ATR0594G186 Amborella trichopoda HOM05D005644 ORTHO05D007092 5.7e-88 327.8 193 82.4
AUR62020530 Chenopodium quinoa HOM05D005644 ORTHO05D007092 9.6e-88 327.0 193 82.4
AUR62043224 Chenopodium quinoa HOM05D005644 ORTHO05D007092 9.6e-88 327.0 193 82.4
Os05g0579800 Oryza sativa ssp. japonica HOM05D005644 ORTHO05D007092 4.8e-87 324.7 200 78.5
VMungo0251G3244 Vigna mungo HOM05D005644 ORTHO05D007092 5.8e-85 317.8 170 90.0
BraA06t26260Z Brassica rapa HOM05D005644 ORTHO05D007092 1.7e-84 316.2 199 77.9
FAN19G1519 Fragaria x ananassa HOM05D005644 ORTHO05D007092 1.1e-83 313.5 167 91.6
CSS0024834 Camellia sinensis var. sinensis HOM05D005644 ORTHO05D007092 4.2e-83 311.6 164 91.5
Zm00001eb294590 Zea mays HOM05D005644 ORTHO05D007092 4.2e-83 311.6 182 80.8
Nitab4.5_0000136g0330 Nicotiana tabacum HOM05D005644 ORTHO05D007092 1.2e-82 310.1 172 88.4
AUR62034193 Chenopodium quinoa HOM05D005644 ORTHO05D007092 1.6e-82 309.7 193 78.8
CDE04G3399 Ceratophyllum demersum HOM05D005644 ORTHO05D007092 6.1e-82 307.8 164 86.6
Nitab4.5_0005482g0020 Nicotiana tabacum HOM05D005644 ORTHO05D007092 6.1e-82 307.8 174 88.5
Peaxi162Scf00008g03525 Petunia axillaris HOM05D005644 ORTHO05D007092 7.9e-82 307.4 190 81.6
Atru.chr3.600 Acer truncatum HOM05D005644 ORTHO05D007092 1.1e-78 297.0 194 74.7
Sabra05G0100200 Salix brachista HOM05D005644 ORTHO05D007092 9.0e-78 293.9 159 88.7
FAN28G2376 Fragaria x ananassa HOM05D005644 ORTHO05D003509 5.0e-76 288.1 157 91.7
FAN23G1669 Fragaria x ananassa HOM05D005644 ORTHO05D007092 6.5e-76 287.7 158 91.1
BolC7t40857H Brassica oleracea HOM05D005644 ORTHO05D007092 1.8e-73 279.6 197 70.6
FAN08G2945 Fragaria x ananassa HOM05D005644 ORTHO05D007092 8.8e-73 277.3 156 87.8
Hma1.2p1_0789F.1_g218290 Hydrangea macrophylla HOM05D005644 ORTHO05D007092 1.1e-67 260.4 134 93.3
Cpa.g.sc6.131 Carica papaya HOM05D005644 ORTHO05D007092 4.2e-67 258.5 139 89.9
HPP92_023420 Vanilla planifolia HOM05D005644 ORTHO05D007092 6.1e-66 254.6 194 67.0
MBI08_g40822_MAGBIO Magnolia biondii HOM05D005644 ORTHO05D007092 3.0e-65 252.3 227 62.6
FAN26G0781 Fragaria x ananassa HOM05D000577 ORTHO05D003509 1.4e-62 243.4 133 90.2
Mapoly0106s0034 Marchantia polymorpha HOM05D005644 ORTHO05D007092 7.7e-61 237.7 170 65.9
BcaC06g36396 Brassica carinata HOM05D005644 ORTHO05D007092 1.0e-60 237.3 164 70.1
Pp3c7_6320 Physcomitrium patens HOM05D005644 ORTHO05D007092 1.0e-57 227.3 170 62.9
FAN18G2110 Fragaria x ananassa HOM05D005644 ORTHO05D007092 1.8e-57 226.5 166 71.1
SMO137G0236 Selaginella moellendorffii HOM05D005644 ORTHO05D007092 6.7e-57 224.6 170 62.4
SGA_v2.0_scaffold2G01321 Striga asiatica HOM05D005644 ORTHO05D007092 1.1e-56 223.8 190 63.7
AagrBONN_evm.TU.Sc2ySwM_362.2207 Anthoceros agrestis HOM05D005644 ORTHO05D007092 5.7e-56 221.5 173 60.1
MCO15G254 Micromonas commoda HOM05D005644 ORTHO05D007092 1.6e-53 213.4 178 56.7
CARHR108880 Cardamine hirsuta HOM05D005644 ORTHO05D007092 1.5e-51 206.8 112 84.8
PRCOL_00001837 Prasinoderma coloniale HOM05D005644 ORTHO05D007092 2.6e-48 196.1 175 56.0
Haze_27504 Corylus avellana HOM05D005644 ORTHO05D007092 5.5e-43 178.3 142 56.3
SEGI_22782 Sequoiadendron giganteum HOM05D005644 ORTHO05D007092 6.1e-42 174.9 119 69.7
CBR_g49399 Chara braunii HOM05D005644 ORTHO05D007092 5.4e-38 161.8 112 64.3
Cre13.g571850 Chlamydomonas reinhardtii HOM05D005644 ORTHO05D007092 2.0e-37 159.8 144 48.6
FAN13G0528 Fragaria x ananassa HOM05D005644 ORTHO05D007092 6.1e-34 148.3 167 53.3
DCAR_025950 Daucus carota HOM05D005644 ORTHO05D007092 1.2e-29 134.0 135 54.8
Hma1.2p1_2451F.1_g322360 Hydrangea macrophylla HOM05D005644 ORTHO05D007092 3.9e-28 129.0 132 56.1
MBI02_g42708_MAGBIO Magnolia biondii HOM05D005644 ORTHO05D007092 4.3e-27 125.6 135 56.3
C07p04570 Brassica napus HOM05D005644 ORTHO05D007092 1.7e-23 113.6 125 48.8
MBI02_g23461_MAGBIO Magnolia biondii HOM05D005644 ORTHO05D007092 7.0e-22 108.2 219 37.9
MBI18_g01974_MAGBIO Magnolia biondii HOM05D005644 ORTHO05D007092 1.6e-21 107.1 68 75.0
MBI18_g16980_MAGBIO Magnolia biondii HOM05D005644 ORTHO05D007092 1.3e-20 104.0 123 50.4
MBI02_g17151_MAGBIO Magnolia biondii HOM05D005644 ORTHO05D007092 4.3e-19 99.0 135 45.2
Hund21501 Selenicereus undatus HOM05D005644 ORTHO05D007092 1.4e-17 94.0 53 86.8
Hma1.2p1_0450F.1_g155660 Hydrangea macrophylla HOM05D005644 ORTHO05D007092 4.0e-17 92.4 57 78.9
COL.COLO4_22055 Corchorus olitorius HOM05D005644 ORTHO05D007092 4.4e-16 89.0 50 88.0
Ah.13g077660 Amaranthus hybridus HOM05D005644 ORTHO05D007092 1.6e-13 80.5 57 66.7
Thecc.08G151500 Theobroma cacao HOM05D005644 ORTHO05D007092 4.0e-09 65.9 33 81.8
MBI16_g04464_MAGBIO Magnolia biondii HOM05D005644 ORTHO05D007092 8.9e-09 64.7 102 41.2
Dinv38404 Davidia involucrata HOM05D005644 ORTHO05D007092 2.4e-06 56.6 37 75.7
Thecc.01G208400 Theobroma cacao HOM05D005644 ORTHO05D408548 9.2e-06 54.7 34 79.4


User provided reference genes

Program Settings