Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.7G147200 Prunus persica HOM05D006999 ORTHO05D008936 0.0e+00 1169.5 654 100.0
MD15G1270900 Malus domestica HOM05D006999 ORTHO05D008936 2.4e-271 938.7 635 77.2
RcHm_v2.0_Chr2g0102951 Rosa chinensis HOM05D006999 ORTHO05D008936 3.3e-265 918.3 660 72.9
FAN23G0790 Fragaria x ananassa HOM05D006999 ORTHO05D008936 7.9e-251 870.5 639 76.7
QL06p044626 Quercus lobata HOM05D006999 ORTHO05D008936 5.7e-241 837.8 651 67.6
CANSAT01G1763 Cannabis sativa HOM05D006999 ORTHO05D008936 7.7e-238 827.4 650 67.5
FvH4_2g07140 Fragaria vesca HOM05D006999 ORTHO05D008936 1.1e-236 823.5 634 68.0
CiPaw.01G031400 Carya illinoinensis HOM05D006999 ORTHO05D008936 5.5e-236 821.2 661 67.3
Cfa004253 Carpinus fangiana HOM05D006999 ORTHO05D008936 1.8e-223 779.6 642 66.0
Cpa.g.sc15.132 Carica papaya HOM05D006999 ORTHO05D008936 1.6e-219 766.5 655 62.3
Thecc.01G043300 Theobroma cacao HOM05D006999 ORTHO05D008936 3.6e-219 765.4 650 62.0
arahy.Tifrunner.gnm1.ann1.ZB5P2M Arachis hypogaea HOM05D006999 ORTHO05D008936 7.5e-217 757.7 639 64.8
Manes.13G134700 Manihot esculenta HOM05D006999 ORTHO05D008936 2.0e-214 749.6 650 61.5
Sabra05G0104700 Salix brachista HOM05D006999 ORTHO05D008936 7.3e-212 741.1 639 61.3
Gohir.D12G067100 Gossypium hirsutum HOM05D006999 ORTHO05D008936 1.2e-211 740.3 647 60.1
GSVIVG01019040001 Vitis vinifera HOM05D006999 ORTHO05D008936 6.1e-211 738.0 652 59.4
Gorai.008G070500 Gossypium raimondii HOM05D006999 ORTHO05D008936 1.0e-210 737.3 647 60.0
Phvul.002G025400 Phaseolus vulgaris HOM05D006999 ORTHO05D008936 8.9e-210 734.2 658 67.2
VMungo1215G1670 Vigna mungo HOM05D006999 ORTHO05D008936 5.7e-209 731.5 658 66.9
Duzib147G0594 Durio zibethinus HOM05D006999 ORTHO05D008936 1.4e-207 726.9 651 59.8
Potri.005G128600 Populus trichocarpa HOM05D006999 ORTHO05D008936 3.2e-207 725.7 639 61.0
Lj2g0003627 Lotus japonicus HOM05D006999 ORTHO05D008936 2.7e-206 722.6 639 60.3
Gohir.A12G066700 Gossypium hirsutum HOM05D006999 ORTHO05D008936 3.5e-206 722.2 647 58.9
RcHm_v2.0_Chr2g0102871 Rosa chinensis HOM05D006999 ORTHO05D008936 1.7e-197 693.3 517 70.4
Dinv29387 Davidia involucrata HOM05D006999 ORTHO05D008936 1.4e-194 683.7 606 59.4
Ca_24822_v3 Cicer arietinum L. HOM05D006999 ORTHO05D008936 8.9e-194 681.0 642 56.1
Lalb_Chr09g0322731 Lupinus albus HOM05D006999 ORTHO05D008936 7.5e-193 677.9 647 62.4
CSS0009159 Camellia sinensis var. sinensis HOM05D006999 ORTHO05D008936 2.9e-192 676.0 640 57.2
TWI73G1021 Tripterygium wilfordii HOM05D006999 ORTHO05D008936 3.7e-192 675.6 645 60.0
Aa31LG1G15180 Aethionema arabicum HOM05D006999 ORTHO05D008936 6.4e-192 674.9 656 54.6
CSS0003698 Camellia sinensis var. sinensis HOM05D006999 ORTHO05D008936 1.4e-191 673.7 640 57.0
Dinv39939 Davidia involucrata HOM05D006999 ORTHO05D008936 2.4e-191 672.9 651 55.5
FvH4_1g14280 Fragaria vesca HOM05D006999 ORTHO05D008936 1.2e-190 670.6 512 68.4
Glyma.11G063000 Glycine max HOM05D006999 ORTHO05D008936 3.0e-189 666.0 656 61.6
Cc05_g07730 Coffea canephora HOM05D006999 ORTHO05D008936 3.9e-189 665.6 630 56.5
THA.LOC104826827 Tarenaya hassleriana HOM05D006999 ORTHO05D008936 2.5e-188 662.9 646 54.0
Sc03g0001020 Simmondsia chinensis HOM05D006999 ORTHO05D008936 2.8e-187 659.4 631 63.2
Medtr5g019030 Medicago truncatula HOM05D006999 ORTHO05D008936 1.5e-185 653.7 654 61.8
MSTRG.15411 Avicennia marina HOM05D006999 ORTHO05D008936 9.9e-185 651.0 655 53.9
AT5G66631 Arabidopsis thaliana HOM05D006999 ORTHO05D008936 3.8e-184 649.0 651 53.9
CARHR281110 Cardamine hirsuta HOM05D006999 ORTHO05D008936 6.4e-184 648.3 656 52.9
PGSC0003DMG400001186 Solanum tuberosum HOM05D006999 ORTHO05D008936 8.4e-184 647.9 621 62.0
Haze_15147 Corylus avellana HOM05D000909 ORTHO05D000928 2.1e-182 643.3 651 56.8
Thhalv10005592m.g Eutrema salsugineum HOM05D006999 ORTHO05D008936 2.1e-182 643.3 647 53.9
Solyc02g065510.1 Solanum lycopersicum HOM05D006999 ORTHO05D008936 2.7e-182 642.9 621 61.4
Sopen02g015710 Solanum pennellii HOM05D006999 ORTHO05D008936 3.5e-182 642.5 621 61.2
Oeu049321.1 Olea europaea HOM05D006999 ORTHO05D008936 7.8e-182 641.3 636 54.1
Oeu049309.1 Olea europaea HOM05D006999 ORTHO05D008936 1.5e-180 637.1 634 54.1
BcaC06g34726 Brassica carinata HOM05D006999 ORTHO05D008936 4.3e-180 635.6 650 53.8
Sp2g30070 Schrenkiella parvula HOM05D006999 ORTHO05D008936 4.3e-180 635.6 652 53.2
TPR.G34465 Trifolium pratense HOM05D006999 ORTHO05D008936 2.1e-179 633.3 651 54.8
DCAR_026261 Daucus carota HOM05D006999 ORTHO05D008936 2.6e-177 626.3 636 53.5
AL8G44870 Arabidopsis lyrata HOM05D006999 ORTHO05D008936 9.9e-177 624.4 658 52.6
BcaB02g10006 Brassica carinata HOM05D006999 ORTHO05D008936 2.9e-176 622.9 640 53.1
TAR381G1039 Trochodendron aralioides HOM05D006999 ORTHO05D008936 4.9e-176 622.1 658 59.0
BolC7t43049H Brassica oleracea HOM05D006999 ORTHO05D008936 1.4e-175 620.5 651 53.1
Aqoxy6G01000 Aquilegia oxysepala HOM05D006999 ORTHO05D008936 1.9e-175 620.2 629 53.7
Eucgr.I02485 Eucalyptus grandis HOM05D006999 ORTHO05D008936 4.2e-175 619.0 647 52.7
Migut.K00852 Erythranthe guttata HOM05D006999 ORTHO05D008936 3.5e-174 615.9 624 52.6
A07p17310 Brassica napus HOM05D006999 ORTHO05D008936 4.6e-174 615.5 637 52.4
PSO541G6186 Papaver somniferum HOM05D006999 ORTHO05D008936 4.6e-174 615.5 660 50.6
BraA07t29457Z Brassica rapa HOM05D006999 ORTHO05D008936 1.0e-173 614.4 638 52.5
Psat2g162640 Pisum sativum HOM05D006999 ORTHO05D008936 1.1e-172 610.9 654 56.9
Nitab4.5_0000090g0200 Nicotiana tabacum HOM05D006999 ORTHO05D008936 3.3e-172 609.4 632 59.5
Nitab4.5_0004292g0030 Nicotiana tabacum HOM05D006999 ORTHO05D008936 2.1e-171 606.7 653 57.7
SGA_v2.0_scaffold62G21537 Striga asiatica HOM05D006999 ORTHO05D008936 1.2e-169 600.9 623 52.3
SalBow1G0035 Salvia bowleyana HOM05D006999 ORTHO05D008936 1.7e-168 597.0 622 52.4
CAN.G93.18 Capsicum annuum HOM05D006999 ORTHO05D008936 1.9e-167 593.6 651 57.3
Atru.chr3.494 Acer truncatum HOM05D006999 ORTHO05D008936 2.7e-166 589.7 501 61.1
Ciclev10027580m.g Citrus clementina HOM05D006999 ORTHO05D008936 1.1e-164 584.3 633 58.6
ECA232G3871 Erigeron canadensis HOM05D006999 ORTHO05D008936 1.5e-161 573.9 619 56.9
vmacro00136 Vaccinium macrocarpon HOM05D006999 ORTHO05D008936 3.4e-161 572.8 656 55.8
AUR62008030 Chenopodium quinoa HOM05D006999 ORTHO05D008936 9.9e-161 571.2 649 55.5
Nn5g29479 Nelumbo nucifera HOM05D006999 ORTHO05D008936 2.2e-160 570.1 644 48.9
Rhsim02G0225000 Rhododendron simsii HOM05D006999 ORTHO05D008936 3.5e-158 562.8 554 54.5
Peaxi162Scf00019g00154 Petunia axillaris HOM05D006999 ORTHO05D008936 1.3e-157 560.8 625 50.2
Ah.02g126330 Amaranthus hybridus HOM05D006999 ORTHO05D008936 3.9e-157 559.3 632 55.1
Rhsim02G0229300 Rhododendron simsii HOM05D006999 ORTHO05D008936 3.9e-157 559.3 654 54.4
Lj4P134T41 Lonicera japonica HOM05D006999 ORTHO05D008936 1.8e-154 550.4 514 56.0
Oeu049317.1 Olea europaea HOM05D006999 ORTHO05D008936 5.3e-154 548.9 531 55.9
C07p25190 Brassica napus HOM05D006999 ORTHO05D008936 1.3e-152 544.3 608 50.7
Carub.0008s2788 Capsella rubella HOM05D006999 ORTHO05D008936 5.7e-148 528.9 512 54.7
EL10Ac6g14872 Beta vulgaris HOM05D006999 ORTHO05D008936 2.0e-137 493.8 649 50.1
MBI16_g10978_MAGBIO Magnolia biondii HOM05D006999 ORTHO05D003554 5.5e-135 485.7 630 52.2
HanXRQChr09g0265111 Helianthus annuus HOM05D006999 ORTHO05D008936 9.4e-135 485.0 631 43.1
HPP92_025826 Vanilla planifolia HOM05D006999 ORTHO05D008936 2.1e-134 483.8 627 43.9
Actinidia36538 Actinidia chinensis HOM05D006999 ORTHO05D008936 4.7e-134 482.6 657 44.3
Hma1.2p1_2980F.1_g331210 Hydrangea macrophylla HOM05D006999 ORTHO05D008936 1.2e-116 424.9 566 44.7
CDE01G0819 Ceratophyllum demersum HOM05D006999 ORTHO05D008936 1.3e-115 421.4 628 40.3
ATR0782G111 Amborella trichopoda HOM05D006999 ORTHO05D008936 2.8e-115 420.2 681 38.3
Dinv18613 Davidia involucrata HOM05D006999 ORTHO05D008936 7.0e-114 415.6 651 39.5
Dinv26229 Davidia involucrata HOM05D006999 ORTHO05D008936 7.0e-114 415.6 651 39.5
Os01g0167750 Oryza sativa ssp. japonica HOM05D006999 ORTHO05D008936 3.0e-109 400.2 637 39.4
Zm00001eb123240 Zea mays HOM05D006999 ORTHO05D008936 2.3e-101 374.0 623 38.8
Cfa021547 Carpinus fangiana HOM05D006999 ORTHO05D008936 2.0e-97 360.9 648 40.0
Haze_25752 Corylus avellana HOM05D006999 ORTHO05D008936 9.5e-95 352.1 670 35.1
unitig_748.g8403 Utricularia gibba HOM05D006999 ORTHO05D008936 1.6e-94 351.3 367 49.6
SEGI_35610 Sequoiadendron giganteum HOM05D006999 ORTHO05D008936 2.7e-89 334.0 638 34.8
Glyma.01G179251 Glycine max HOM05D006999 ORTHO05D008936 3.5e-73 280.4 272 57.7
FAN28G3023 Fragaria x ananassa HOM05D006999 ORTHO05D008936 3.2e-66 257.3 179 70.4
Cfa003411 Carpinus fangiana HOM05D006999 ORTHO05D008936 3.9e-64 250.4 641 30.1
Glyma.01G179201 Glycine max HOM05D006999 ORTHO05D008936 4.0e-61 240.4 227 80.2
COL.COLO4_22153 Corchorus olitorius HOM05D000225 ORTHO05D003554 2.4e-45 188.0 239 45.6
unitig_748.g8404 Utricularia gibba HOM05D006999 ORTHO05D008936 5.5e-42 176.8 236 41.9
MD02G1156600 Malus domestica HOM05D006999 ORTHO05D008936 6.9e-37 159.8 149 63.8
Aa31LG1G15170 Aethionema arabicum HOM05D000909 ORTHO05D008936 1.3e-32 145.6 151 52.3
FvH4_1g14250 Fragaria vesca HOM05D000909 ORTHO05D000928 3.4e-28 131.0 164 49.4
Actinidia12102 Actinidia chinensis HOM05D006999 ORTHO05D008936 3.7e-22 110.9 152 44.1
HanXRQChr09g0268161 Helianthus annuus HOM05D006999 ORTHO05D008936 1.0e-19 102.8 155 38.7
SalBow1G1508 Salvia bowleyana HOM05D006596 ORTHO05D008497 2.9e-11 74.7 370 23.2
Pp3c4_14140 Physcomitrium patens HOM05D006999 ORTHO05D008936 1.9e-10 72.0 171 26.9
AagrBONN_evm.TU.Sc2ySwM_344.143 Anthoceros agrestis HOM05D004079 ORTHO05D008936 2.5e-10 71.6 109 34.9
EL10Ac6g14214 Beta vulgaris HOM05D006999 ORTHO05D008936 6.1e-09 67.0 65 50.8
Sc09g0001040 Simmondsia chinensis HOM05D006596 ORTHO05D008497 3.0e-08 64.7 189 28.6
CDE12G0140 Ceratophyllum demersum HOM05D001779 ORTHO05D001753 8.8e-08 63.2 165 30.3
Mapoly0001s0055 Marchantia polymorpha HOM05D004079 ORTHO05D005437 8.8e-08 63.2 208 25.5
Potri.001G180000 Populus trichocarpa HOM05D006749 ORTHO05D008352 1.1e-07 62.8 213 26.8
Gohir.A05G336500 Gossypium hirsutum HOM05D007157 ORTHO05D009045 1.5e-07 62.4 198 26.3
Nn1g07882 Nelumbo nucifera HOM05D001779 ORTHO05D001753 2.0e-07 62.0 212 26.4
Sabra01G0146900 Salix brachista HOM05D006749 ORTHO05D008352 2.0e-07 62.0 215 27.0
COL.COLO4_13293 Corchorus olitorius HOM05D000485 ORTHO05D009045 2.6e-07 61.6 194 26.3
Ah.01g005340 Amaranthus hybridus HOM05D006749 ORTHO05D008352 3.3e-07 61.2 198 25.3
BcaC07g42764 Brassica carinata HOM05D000424 ORTHO05D002854 3.3e-07 61.2 151 29.8
Peaxi162Scf00403g00211 Petunia axillaris HOM05D001779 ORTHO05D001753 3.3e-07 61.2 152 29.6
CDE05G0489 Ceratophyllum demersum HOM05D007202 ORTHO05D009125 4.4e-07 60.8 168 25.6
MELO3C004182.2 Cucumis melo HOM05D000424 ORTHO05D002854 4.4e-07 60.8 260 25.4
CsaV3_3G038200 Cucumis sativus L. HOM05D006596 ORTHO05D008497 4.4e-07 60.8 401 21.4
HanXRQChr15g0482301 Helianthus annuus HOM05D000424 ORTHO05D002854 4.4e-07 60.8 238 24.4
BcaC07g40729 Brassica carinata HOM05D000424 ORTHO05D002854 5.7e-07 60.5 214 27.6
Carub.0005s2919 Capsella rubella HOM05D000424 ORTHO05D002854 5.7e-07 60.5 164 28.7
CAN.G649.15 Capsicum annuum HOM05D001779 ORTHO05D001753 7.4e-07 60.1 152 29.6
Sc19g0002120 Simmondsia chinensis HOM05D001779 ORTHO05D001753 7.4e-07 60.1 140 30.0
AagrBONN_evm.TU.Sc2ySwM_228.1237 Anthoceros agrestis HOM05D006749 ORTHO05D008352 9.7e-07 59.7 217 26.3
ClCG02G014900 Citrullus lanatus HOM05D000424 ORTHO05D002854 9.7e-07 59.7 264 25.0
Duzib147G0388 Durio zibethinus HOM05D007157 ORTHO05D009045 9.7e-07 59.7 192 26.0
Thhalv10005842m.g Eutrema salsugineum HOM05D000424 ORTHO05D002854 9.7e-07 59.7 164 28.0
Lsat_1_v5_gn_3_77561 Lactuca sativa HOM05D000424 ORTHO05D002854 9.7e-07 59.7 253 25.3
MBI07_g05481_MAGBIO Magnolia biondii HOM05D001779 ORTHO05D001753 9.7e-07 59.7 175 27.4
vmacro16484 Vaccinium macrocarpon HOM05D005362 ORTHO05D006895 9.7e-07 59.7 257 23.0
C08p37300 Brassica napus HOM05D000424 ORTHO05D002854 1.3e-06 59.3 231 24.7
COL.COLO4_04840 Corchorus olitorius HOM05D007242 ORTHO05D009089 1.3e-06 59.3 116 27.6
Sopen01g002480 Solanum pennellii HOM05D001779 ORTHO05D001753 1.3e-06 59.3 147 28.6
PGSC0003DMG400032206 Solanum tuberosum HOM05D001779 ORTHO05D001753 1.3e-06 59.3 147 28.6
Cc01_g16930 Coffea canephora HOM05D001779 ORTHO05D001753 1.7e-06 58.9 174 27.6
Gorai.012G084300 Gossypium raimondii HOM05D007157 ORTHO05D009045 1.7e-06 58.9 174 26.4
Nitab4.5_0001146g0150 Nicotiana tabacum HOM05D001779 ORTHO05D001753 1.7e-06 58.9 152 29.6
Solyc01g006500.4 Solanum lycopersicum HOM05D001779 ORTHO05D001753 1.7e-06 58.9 147 28.6
TWI75G1451 Tripterygium wilfordii HOM05D006749 ORTHO05D008352 1.7e-06 58.9 195 25.6
ATR1149G109 Amborella trichopoda HOM05D007202 ORTHO05D009125 2.2e-06 58.5 183 26.2
AL5G45290 Arabidopsis lyrata HOM05D000424 ORTHO05D002854 2.2e-06 58.5 164 28.0
BraA06t26809Z Brassica rapa HOM05D001779 ORTHO05D001753 2.2e-06 58.5 150 29.3
Potri.014G121400 Populus trichocarpa HOM05D000424 ORTHO05D002854 2.2e-06 58.5 127 31.5
Sed0004899 Sechium edule HOM05D000424 ORTHO05D002854 2.2e-06 58.5 231 25.5
MSTRG.11079 Avicennia marina HOM05D006749 ORTHO05D008352 2.8e-06 58.2 191 24.6
MSTRG.13447 Avicennia marina HOM05D005622 ORTHO05D002854 2.8e-06 58.2 221 22.6
MD11G1315100 Malus domestica HOM05D000424 ORTHO05D002854 2.8e-06 58.2 150 27.3
SGA_v2.0_scaffold63G21630 Striga asiatica HOM05D005622 ORTHO05D002854 2.8e-06 58.2 254 22.0
THA.LOC104802670 Tarenaya hassleriana HOM05D001779 ORTHO05D001753 2.8e-06 58.2 152 28.3
AUR62016443 Chenopodium quinoa HOM05D006749 ORTHO05D008352 3.7e-06 57.8 195 23.1
CsaV3_2G007110 Cucumis sativus L. HOM05D000424 ORTHO05D002854 3.7e-06 57.8 150 30.0
Hma1.2p1_0212F.1_g089980 Hydrangea macrophylla HOM05D000424 ORTHO05D002854 3.7e-06 57.8 164 27.4
Sp5g00960 Schrenkiella parvula HOM05D000424 ORTHO05D002854 3.7e-06 57.8 151 29.1
BolC8t51308H Brassica oleracea HOM05D000424 ORTHO05D002854 4.8e-06 57.4 219 26.0
Lj1g0021736 Lotus japonicus HOM05D001779 ORTHO05D001753 4.8e-06 57.4 184 25.5
MBI17_g35770_MAGBIO Magnolia biondii HOM05D001779 ORTHO05D001753 4.8e-06 57.4 140 30.7
Nitab4.5_0001568g0160 Nicotiana tabacum HOM05D001779 ORTHO05D001753 4.8e-06 57.4 152 28.9
Nitab4.5_0002247g0010 Nicotiana tabacum HOM05D000424 ORTHO05D002854 4.8e-06 57.4 150 28.7
PSO832G0330 Papaver somniferum HOM05D001779 ORTHO05D001753 4.8e-06 57.4 135 30.4
BcaC06g30762 Brassica carinata HOM05D001779 ORTHO05D001753 6.3e-06 57.0 147 27.9
Gorai.007G155400 Gossypium raimondii HOM05D001779 ORTHO05D001753 6.3e-06 57.0 171 26.9
CiPaw.07G116900 Carya illinoinensis HOM05D000424 ORTHO05D002854 8.2e-06 56.6 219 26.0
SEGI_11175 Sequoiadendron giganteum HOM05D007202 ORTHO05D009125 8.2e-06 56.6 167 24.6


User provided reference genes

Program Settings