Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.7G141900 Prunus persica HOM05D006685 ORTHO05D008244 0.0e+00 1303.9 644 100.0
MD15G1276100 Malus domestica HOM05D006685 ORTHO05D008244 6.4e-261 904.0 701 68.0
RcHm_v2.0_Chr2g0103811 Rosa chinensis HOM05D006685 ORTHO05D008244 1.8e-255 885.9 676 69.1
FvH4_1g14850 Fragaria vesca HOM05D006685 ORTHO05D008244 2.8e-248 862.1 676 67.6
FAN28G0684 Fragaria x ananassa HOM05D006685 ORTHO05D008244 2.4e-247 859.0 674 67.2
FAN26G3106 Fragaria x ananassa HOM05D006685 ORTHO05D008244 7.8e-243 844.0 706 64.4
RcHm_v2.0_Chr1g0329901 Rosa chinensis HOM05D006685 ORTHO05D008244 2.1e-240 835.9 682 66.1
FAN28G1646 Fragaria x ananassa HOM05D006685 ORTHO05D008244 4.0e-239 831.6 660 66.7
FAN23G0082 Fragaria x ananassa HOM05D006685 ORTHO05D008244 2.5e-233 812.4 660 65.6
Cfa004216 Carpinus fangiana HOM05D006685 ORTHO05D008244 1.1e-175 620.9 695 51.7
QL06p043714 Quercus lobata HOM05D006685 ORTHO05D008244 1.5e-172 610.5 700 48.6
Dinv26751 Davidia involucrata HOM05D006685 ORTHO05D008244 4.9e-160 568.9 685 47.6
Duzib187G0300 Durio zibethinus HOM05D006685 ORTHO05D008244 1.1e-159 567.8 666 48.0
CANSAT01G2373 Cannabis sativa HOM05D006685 ORTHO05D008244 1.4e-159 567.4 687 47.9
Potri.005G133500 Populus trichocarpa HOM05D006685 ORTHO05D008244 3.3e-156 556.2 690 47.1
TAR376G1120 Trochodendron aralioides HOM05D006685 ORTHO05D008244 2.3e-154 550.1 718 45.1
Manes.13G130000 Manihot esculenta HOM05D006685 ORTHO05D008244 1.4e-151 540.8 687 47.0
Thecc.01G048300 Theobroma cacao HOM05D006685 ORTHO05D008244 1.9e-151 540.4 671 45.6
Atru.chr3.446 Acer truncatum HOM05D006685 ORTHO05D008244 7.0e-151 538.5 705 45.0
CiPaw.02G011900 Carya illinoinensis HOM05D006685 ORTHO05D008244 7.0e-151 538.5 692 46.5
Hma1.2p1_0546F.1_g176210 Hydrangea macrophylla HOM05D006685 ORTHO05D008244 3.0e-149 533.1 578 50.9
Sabra05G0107200 Salix brachista HOM05D006685 ORTHO05D008244 8.3e-144 515.0 686 44.8
Actinidia36520 Actinidia chinensis HOM05D006685 ORTHO05D008244 1.9e-143 513.8 702 44.4
Gohir.A12G068800 Gossypium hirsutum HOM05D006685 ORTHO05D008244 1.9e-140 503.8 666 44.9
Gorai.008G072600 Gossypium raimondii HOM05D006685 ORTHO05D008244 6.8e-138 495.4 671 44.1
Gohir.D12G090400 Gossypium hirsutum HOM05D006685 ORTHO05D008244 2.6e-137 493.4 670 44.0
Medtr8g079100 Medicago truncatula HOM05D006685 ORTHO05D008244 5.8e-137 492.3 690 42.6
CSS0018173 Camellia sinensis var. sinensis HOM05D006685 ORTHO05D008244 7.5e-137 491.9 681 44.1
Lj7A20T60 Lonicera japonica HOM05D006685 ORTHO05D008244 5.4e-135 485.7 606 47.0
COL.COLO4_11329 Corchorus olitorius HOM05D006685 ORTHO05D008244 1.2e-134 484.6 670 42.1
VMungo0251G1647 Vigna mungo HOM05D006685 ORTHO05D008244 2.1e-134 483.8 682 41.9
TPR.G30340 Trifolium pratense HOM05D006685 ORTHO05D008244 6.0e-134 482.3 688 41.4
Lalb_Chr16g0388451 Lupinus albus HOM05D006685 ORTHO05D008244 1.2e-131 474.6 678 41.4
Psat4g089520 Pisum sativum HOM05D006685 ORTHO05D008244 6.2e-131 472.2 677 40.6
Phvul.003G248400 Phaseolus vulgaris HOM05D006685 ORTHO05D008244 5.2e-130 469.2 697 41.0
Hma1.2p1_0546F.1_g176200 Hydrangea macrophylla HOM05D006685 ORTHO05D008244 1.5e-129 467.6 535 49.7
Glyma.02G062800 Glycine max HOM05D006685 ORTHO05D008244 1.7e-128 464.2 695 41.6
Aqoxy6G00915 Aquilegia oxysepala HOM05D006685 ORTHO05D008244 4.2e-127 459.5 685 42.8
Sc03g0001280 Simmondsia chinensis HOM05D006685 ORTHO05D008244 6.0e-126 455.7 687 41.3
vmacro05297 Vaccinium macrocarpon HOM05D006685 ORTHO05D008244 2.5e-124 450.3 636 43.9
Lj4g0023849 Lotus japonicus HOM05D006685 ORTHO05D008244 5.6e-124 449.1 689 39.3
Hund16306 Selenicereus undatus HOM05D006685 ORTHO05D008244 5.6e-124 449.1 674 41.2
MD06G1092200 Malus domestica HOM05D006685 ORTHO05D008244 6.2e-123 445.7 315 72.1
PGSC0003DMG402010073 Solanum tuberosum HOM05D006685 ORTHO05D008244 2.9e-120 436.8 685 40.7
DCAR_025691 Daucus carota HOM05D006685 ORTHO05D008244 7.8e-118 428.7 654 39.8
Sopen02g034940 Solanum pennellii HOM05D006685 ORTHO05D008244 7.8e-118 428.7 685 39.4
Nitab4.5_0001014g0040 Nicotiana tabacum HOM05D006685 ORTHO05D008244 9.6e-116 421.8 675 40.6
CAN.G836.36 Capsicum annuum HOM05D006685 ORTHO05D008244 9.0e-114 415.2 673 38.6
Cc07_g05580 Coffea canephora HOM05D006685 ORTHO05D008244 1.2e-113 414.8 698 38.7
CARHR159940 Cardamine hirsuta HOM05D006685 ORTHO05D008244 2.0e-113 414.1 689 39.9
ClCG02G012840 Citrullus lanatus HOM05D006685 ORTHO05D008244 2.4e-111 407.1 720 39.3
Ciclev10025347m.g Citrus clementina HOM05D006685 ORTHO05D008244 5.4e-111 406.0 533 46.3
SalBow1G5517 Salvia bowleyana HOM05D006685 ORTHO05D008244 2.1e-110 404.1 651 40.4
Sed0001332 Sechium edule HOM05D006685 ORTHO05D008244 7.9e-110 402.1 695 39.4
Peaxi162Scf00993g00018 Petunia axillaris HOM05D006685 ORTHO05D008244 1.3e-109 401.4 565 42.7
AT3G50430 Arabidopsis thaliana HOM05D006685 ORTHO05D008244 5.1e-109 399.4 696 39.2
MBI16_g19900_MAGBIO Magnolia biondii HOM05D006685 ORTHO05D008244 3.3e-108 396.7 687 39.6
Eucgr.I01015 Eucalyptus grandis HOM05D006685 ORTHO05D008244 7.4e-108 395.6 573 42.1
Thhalv10010194m.g Eutrema salsugineum HOM05D006685 ORTHO05D008244 7.4e-108 395.6 694 39.2
HanXRQChr12g0378291 Helianthus annuus HOM05D006685 ORTHO05D008244 1.6e-107 394.4 668 38.8
PSO541G3044 Papaver somniferum HOM05D006685 ORTHO05D008244 2.1e-107 394.0 684 37.9
Nn5g29383 Nelumbo nucifera HOM05D006685 ORTHO05D008244 4.8e-107 392.9 573 41.2
Sp5g11730 Schrenkiella parvula HOM05D006685 ORTHO05D008244 4.8e-107 392.9 701 39.1
Migut.H00483 Erythranthe guttata HOM05D006685 ORTHO05D008244 6.2e-107 392.5 677 39.0
AL5G30586 Arabidopsis lyrata HOM05D006685 ORTHO05D008244 8.1e-107 392.1 702 38.5
CsaV3_2G016900 Cucumis sativus L. HOM05D006685 ORTHO05D008244 2.4e-106 390.6 694 39.8
PGR119G2375 Punica granatum HOM05D006685 ORTHO05D008244 2.4e-106 390.6 689 38.9
Nitab4.5_0000108g0340 Nicotiana tabacum HOM05D006685 ORTHO05D008244 2.0e-105 387.5 694 38.6
Solyc02g090260.3 Solanum lycopersicum HOM05D006685 ORTHO05D008244 3.4e-105 386.7 684 37.7
Aa31LG4G18660 Aethionema arabicum HOM05D006685 ORTHO05D008244 1.1e-103 381.7 720 37.5
Lj7A17G42 Lonicera japonica HOM05D006685 ORTHO05D008244 1.4e-103 381.3 551 43.6
BraA01t02325Z Brassica rapa HOM05D006685 ORTHO05D008244 8.7e-101 372.1 682 38.1
BcaB05g23218 Brassica carinata HOM05D006685 ORTHO05D008244 2.1e-99 367.5 684 37.0
A01p24130 Brassica napus HOM05D006685 ORTHO05D008244 2.4e-98 364.0 664 38.1
Ca_22212_v3 Cicer arietinum L. HOM05D006685 ORTHO05D008244 9.0e-98 362.1 680 36.5
BolC1t02922H Brassica oleracea HOM05D006685 ORTHO05D008244 3.4e-97 360.1 690 37.0
Ah.02g123950 Amaranthus hybridus HOM05D005480 ORTHO05D006735 1.7e-96 357.8 657 37.0
C01p29820 Brassica napus HOM05D006685 ORTHO05D008244 4.9e-96 356.3 677 37.2
Carub.0005s1677 Capsella rubella HOM05D006685 ORTHO05D008244 7.1e-95 352.4 512 42.8
Ca_22230_v3 Cicer arietinum L. HOM05D006685 ORTHO05D008244 1.1e-92 345.1 668 35.9
THA.LOC104821263 Tarenaya hassleriana HOM05D006685 ORTHO05D008244 5.7e-92 342.8 604 39.6
MELO3C020890.2 Cucumis melo HOM05D006685 ORTHO05D008244 1.6e-91 341.3 743 36.3
ATR0733G107 Amborella trichopoda HOM05D006685 ORTHO05D008244 4.5e-89 333.2 718 32.7
AUR62003829 Chenopodium quinoa HOM05D006685 ORTHO05D008244 5.1e-85 319.7 438 45.0
Haze_15195 Corylus avellana HOM05D006685 ORTHO05D008244 4.3e-84 316.6 709 34.4
Oeu003945.1 Olea europaea HOM05D006685 ORTHO05D008244 5.7e-84 316.2 367 47.4
SGA_v2.0_scaffold204G41611 Striga asiatica HOM05D006685 ORTHO05D008244 8.2e-83 312.4 552 37.0
PGR044G2727 Punica granatum HOM05D006685 ORTHO05D008244 1.1e-82 312.0 437 43.0
Lsat_1_v5_gn_3_92360 Lactuca sativa HOM05D006685 ORTHO05D008244 2.0e-81 307.8 652 33.6
Cpa.g.sc76.25 Carica papaya HOM05D006685 ORTHO05D008244 1.6e-78 298.1 373 45.0
ECA246G1174 Erigeron canadensis HOM05D006685 ORTHO05D008244 2.1e-78 297.7 691 34.7
BcaC09g50030 Brassica carinata HOM05D006685 ORTHO05D008244 3.7e-75 287.0 572 35.7
AUR62001974 Chenopodium quinoa HOM05D006685 ORTHO05D008244 2.5e-71 274.2 680 33.1
HPP92_017771 Vanilla planifolia HOM05D006685 ORTHO05D008244 1.6e-70 271.6 534 35.2
Os07g0120700 Oryza sativa ssp. japonica HOM05D006685 ORTHO05D008244 1.4e-66 258.5 531 35.6
Zm00001eb209640 Zea mays HOM05D006685 ORTHO05D008244 7.0e-66 256.1 571 34.5
Zm00001eb209650 Zea mays HOM05D006685 ORTHO05D008244 7.0e-66 256.1 571 34.5
unitig_749.g14219 Utricularia gibba HOM05D006685 ORTHO05D008244 3.5e-65 253.8 389 41.1
arahy.Tifrunner.gnm1.ann1.5EE2XW Arachis hypogaea HOM05D006685 ORTHO05D008244 7.7e-65 252.7 367 39.2
FAN28G0437 Fragaria x ananassa HOM05D006685 ORTHO05D008244 7.7e-65 252.7 194 70.6
CSS0022206 Camellia sinensis var. sinensis HOM05D006685 ORTHO05D008244 7.7e-49 199.5 320 38.8
Prupe.5G239300 Prunus persica HOM05D006685 ORTHO05D008244 4.4e-44 183.7 97 93.8
CDE07G0460 Ceratophyllum demersum HOM05D006685 ORTHO05D008244 1.7e-43 181.8 377 34.5
GSVIVG01002723001 Vitis vinifera HOM05D006685 ORTHO05D008244 1.4e-34 152.1 151 57.6
GSVIVG01036190001 Vitis vinifera HOM05D006685 ORTHO05D008244 1.4e-29 135.6 152 50.7
FAN05G3710 Fragaria x ananassa HOM05D006685 ORTHO05D008244 5.4e-26 123.6 92 70.7
FAN08G2647 Fragaria x ananassa HOM05D006685 ORTHO05D008244 5.4e-26 123.6 92 70.7
ATR0733G174 Amborella trichopoda HOM05D006685 ORTHO05D008244 3.9e-24 117.5 138 44.9
unitig_78.g29629 Utricularia gibba HOM05D006685 ORTHO05D008244 2.5e-23 114.8 622 24.1
Mapoly0122s0032 Marchantia polymorpha HOM05D006685 ORTHO05D008244 6.8e-21 106.7 475 25.5
MD06G1092300 Malus domestica HOM05D006685 ORTHO05D008244 2.0e-20 105.1 58 84.5
Pp3c3_30590 Physcomitrium patens HOM05D006685 ORTHO05D008244 6.2e-14 83.6 499 23.6
MD06G1092100 Malus domestica HOM05D006685 ORTHO05D008244 8.9e-13 79.7 50 82.0
FAN28G0452 Fragaria x ananassa HOM05D006685 ORTHO05D008244 2.0e-12 78.6 57 75.4
CDE07G1850 Ceratophyllum demersum HOM05D006685 ORTHO05D008244 1.9e-10 72.0 227 27.8
SEGI_38886 Sequoiadendron giganteum HOM05D006685 ORTHO05D008244 9.3e-10 69.7 173 31.8
CBR_g36358 Chara braunii HOM05D005614 ORTHO05D006759 2.1e-09 68.6 129 37.2
SEGI_35306 Sequoiadendron giganteum HOM05D006685 ORTHO05D008244 1.3e-08 65.9 134 33.6
SEGI_02281 Sequoiadendron giganteum HOM05D006685 ORTHO05D008244 1.7e-08 65.5 188 28.7
AagrBONN_evm.TU.Sc2ySwM_228.383 Anthoceros agrestis HOM05D039764 ORTHO05D031174 2.1e-06 58.5 252 28.2
arahy.Tifrunner.gnm1.ann1.6LA5S9 Arachis hypogaea HOM05D002494 ORTHO05D002673 8.1e-06 56.6 30 83.3
arahy.Tifrunner.gnm1.ann1.G2N9P3 Arachis hypogaea HOM05D000296 ORTHO05D008244 8.1e-06 56.6 30 83.3


User provided reference genes

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