Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.7G140800 Prunus persica HOM05D005053 ORTHO05D006206 5.1e-90 334.3 163 100.0
MD02G1163200 Malus domestica HOM05D005053 ORTHO05D006206 5.6e-81 304.3 163 90.8
RcHm_v2.0_Chr2g0104011 Rosa chinensis HOM05D005053 ORTHO05D006206 8.2e-80 300.4 163 89.6
FAN23G1215 Fragaria x ananassa HOM05D005053 ORTHO05D006206 1.0e-77 293.5 164 86.6
FAN26G1713 Fragaria x ananassa HOM05D005053 ORTHO05D006206 1.0e-77 293.5 164 86.6
FvH4_1g14960 Fragaria vesca HOM05D005053 ORTHO05D006206 1.3e-77 293.1 164 86.6
FAN19G0163 Fragaria x ananassa HOM05D005053 ORTHO05D006206 4.9e-77 291.2 164 86.0
MD15G1276200 Malus domestica HOM05D005053 ORTHO05D006206 1.9e-76 289.3 163 89.0
FAN28G1734 Fragaria x ananassa HOM05D005053 ORTHO05D006206 5.5e-76 287.7 165 85.5
CiPaw.01G025900 Carya illinoinensis HOM05D005053 ORTHO05D006206 3.5e-75 285.0 162 85.2
Glyma.17G180900 Glycine max HOM05D005053 ORTHO05D006206 1.3e-74 283.1 162 87.0
arahy.Tifrunner.gnm1.ann1.VE46QQ Arachis hypogaea HOM05D005053 ORTHO05D006206 1.1e-73 280.0 163 85.3
Lalb_Chr09g0333681 Lupinus albus HOM05D005053 ORTHO05D006206 1.9e-73 279.3 163 84.0
arahy.Tifrunner.gnm1.ann1.IMYE37 Arachis hypogaea HOM05D005053 ORTHO05D006206 2.5e-73 278.9 163 84.7
Lj4g0026236 Lotus japonicus HOM05D005053 ORTHO05D006206 3.3e-73 278.5 163 85.3
Aqoxy6G00906 Aquilegia oxysepala HOM05D005053 ORTHO05D006206 4.3e-73 278.1 162 82.7
Manes.13G129200 Manihot esculenta HOM05D005053 ORTHO05D006206 5.7e-73 277.7 162 84.0
COL.COLO4_11341 Corchorus olitorius HOM05D005053 ORTHO05D006206 1.3e-72 276.6 163 83.4
HanXRQChr14g0448331 Helianthus annuus HOM05D005053 ORTHO05D006206 3.7e-72 275.0 162 84.0
Ca_22210_v3 Cicer arietinum L. HOM05D005053 ORTHO05D006206 4.8e-72 274.6 163 82.8
Phvul.003G248000 Phaseolus vulgaris HOM05D005053 ORTHO05D006206 6.3e-72 274.2 162 84.6
Atru.chr3.440 Acer truncatum HOM05D005053 ORTHO05D006206 8.2e-72 273.9 163 83.4
Cfa003962 Carpinus fangiana HOM05D005053 ORTHO05D006206 8.2e-72 273.9 163 84.7
Ciclev10026393m.g Citrus clementina HOM05D005053 ORTHO05D006206 1.1e-71 273.5 163 83.4
PGR102G2816 Punica granatum HOM05D005053 ORTHO05D006206 1.1e-71 273.5 163 82.8
Gorai.008G072800 Gossypium raimondii HOM05D005053 ORTHO05D006206 1.4e-71 273.1 163 81.0
Lsat_1_v5_gn_2_86920 Lactuca sativa HOM05D005053 ORTHO05D006206 1.4e-71 273.1 162 83.3
Cpa.g.sc6.408 Carica papaya HOM05D005053 ORTHO05D006206 1.8e-71 272.7 162 82.7
Thecc.01G049700 Theobroma cacao HOM05D005053 ORTHO05D006206 1.8e-71 272.7 164 82.3
VMungo0251G0766 Vigna mungo HOM05D005053 ORTHO05D006206 2.4e-71 272.3 162 85.2
HanXRQChr07g0199901 Helianthus annuus HOM05D005053 ORTHO05D006206 5.3e-71 271.2 162 82.1
GSVIVG01005060001 Vitis vinifera HOM05D005053 ORTHO05D006206 2.0e-70 269.2 162 81.5
Medtr8g079240 Medicago truncatula HOM05D005053 ORTHO05D006206 2.6e-70 268.9 163 81.0
Actinidia12070 Actinidia chinensis HOM05D005053 ORTHO05D006206 3.4e-70 268.5 163 83.4
ECA238G1636 Erigeron canadensis HOM05D005053 ORTHO05D006206 5.9e-70 267.7 162 80.2
CSS0024932 Camellia sinensis var. sinensis HOM05D005053 ORTHO05D006206 1.0e-69 266.9 163 81.6
Actinidia36514 Actinidia chinensis HOM05D005053 ORTHO05D006206 2.2e-69 265.8 163 84.0
MELO3C007534.2 Cucumis melo HOM05D005053 ORTHO05D006206 3.8e-69 265.0 164 78.7
CsaV3_6G042980 Cucumis sativus L. HOM05D005053 ORTHO05D006206 3.8e-69 265.0 164 78.7
ClCG01G016600 Citrullus lanatus HOM05D005053 ORTHO05D006206 6.5e-69 264.2 164 78.7
Cc07_g05640 Coffea canephora HOM05D005053 ORTHO05D006206 6.5e-69 264.2 163 80.4
Sed0021889 Sechium edule HOM05D005053 ORTHO05D006206 6.5e-69 264.2 163 78.5
TAR376G0500 Trochodendron aralioides HOM05D005053 ORTHO05D006206 6.5e-69 264.2 161 81.4
Hma1.2p1_0687F.1_g203520 Hydrangea macrophylla HOM05D005053 ORTHO05D006206 3.2e-68 261.9 163 80.4
Nn6g32115 Nelumbo nucifera HOM05D005053 ORTHO05D006206 3.2e-68 261.9 162 75.9
Psat4g088960 Pisum sativum HOM05D005053 ORTHO05D006206 1.2e-67 260.0 158 81.0
Migut.H00475 Erythranthe guttata HOM05D005053 ORTHO05D006206 3.6e-67 258.5 163 79.8
vmacro17912 Vaccinium macrocarpon HOM05D005053 ORTHO05D006206 4.6e-67 258.1 163 77.9
PSO541G4895 Papaver somniferum HOM05D005053 ORTHO05D006206 6.1e-67 257.7 162 79.0
PSO675G4006 Papaver somniferum HOM05D005053 ORTHO05D006206 1.4e-66 256.5 162 78.4
Eucgr.H01988 Eucalyptus grandis HOM05D005053 ORTHO05D006206 3.0e-66 255.4 162 77.2
THA.LOC104819229 Tarenaya hassleriana HOM05D005053 ORTHO05D006206 9.7e-65 250.4 163 77.3
CAN.G470.7 Capsicum annuum HOM05D005053 ORTHO05D006206 1.7e-64 249.6 163 77.9
Sc03g0001310 Simmondsia chinensis HOM05D005053 ORTHO05D006206 1.7e-64 249.6 162 77.2
Nitab4.5_0000806g0140 Nicotiana tabacum HOM05D005053 ORTHO05D006206 2.2e-64 249.2 162 78.4
Potri.007G037800 Populus trichocarpa HOM05D005053 ORTHO05D006206 3.7e-64 248.4 163 76.1
AUR62001971 Chenopodium quinoa HOM05D005053 ORTHO05D006206 4.8e-64 248.1 163 76.1
Hund13583 Selenicereus undatus HOM05D005053 ORTHO05D006206 1.1e-63 246.9 163 74.2
MSTRG.15402 Avicennia marina HOM05D005053 ORTHO05D006206 1.4e-63 246.5 172 72.7
QL06p043337 Quercus lobata HOM05D005053 ORTHO05D006206 1.4e-63 246.5 262 54.2
EL10Ac6g15144 Beta vulgaris HOM05D005053 ORTHO05D006206 1.8e-63 246.1 163 76.1
Thhalv10005270m.g Eutrema salsugineum HOM05D005053 ORTHO05D006206 1.8e-63 246.1 163 76.1
Solyc02g065180.3 Solanum lycopersicum HOM05D005053 ORTHO05D006206 3.1e-63 245.4 163 77.3
Sopen02g015310 Solanum pennellii HOM05D005053 ORTHO05D006206 3.1e-63 245.4 163 77.3
Aa31LG1G15480 Aethionema arabicum HOM05D005053 ORTHO05D006206 1.5e-62 243.0 163 74.8
CARHR280750 Cardamine hirsuta HOM05D005053 ORTHO05D006206 1.5e-62 243.0 163 75.5
THA.LOC104821262 Tarenaya hassleriana HOM05D005053 ORTHO05D006206 1.5e-62 243.0 162 74.7
unitig_736.g22369 Utricularia gibba HOM05D005053 ORTHO05D006206 2.0e-62 242.7 165 73.9
Nn5g29376 Nelumbo nucifera HOM05D005053 ORTHO05D006206 3.4e-62 241.9 162 75.3
AL8G44450 Arabidopsis lyrata HOM05D005053 ORTHO05D006206 7.7e-62 240.7 163 74.2
Carub.0008s2757 Capsella rubella HOM05D005053 ORTHO05D006206 1.0e-61 240.4 163 73.6
Oeu004887.1 Olea europaea HOM05D005053 ORTHO05D006206 1.0e-61 240.4 163 75.5
AT5G66930 Arabidopsis thaliana HOM05D005053 ORTHO05D006206 2.9e-61 238.8 163 74.2
Sp2g29730 Schrenkiella parvula HOM05D005053 ORTHO05D006206 3.2e-60 235.3 163 73.0
Ah.02g124120 Amaranthus hybridus HOM05D005053 ORTHO05D006206 7.2e-60 234.2 163 71.8
Peaxi162Scf00049g01010 Petunia axillaris HOM05D005053 ORTHO05D006206 9.4e-60 233.8 176 71.0
BcaB04g20086 Brassica carinata HOM05D005053 ORTHO05D006206 3.6e-59 231.9 164 71.3
Haze_15460 Corylus avellana HOM05D005053 ORTHO05D006206 4.7e-59 231.5 141 82.3
ATR0225G009 Amborella trichopoda HOM05D005053 ORTHO05D006206 1.0e-58 230.3 163 69.9
SGA_v2.0_scaffold27G11440 Striga asiatica HOM05D005053 ORTHO05D006206 2.3e-58 229.2 164 72.0
SGA_v2.0_scaffold204G41608 Striga asiatica HOM05D005053 ORTHO05D006206 3.0e-58 228.8 164 72.0
Gohir.A12G069100 Gossypium hirsutum HOM05D005053 ORTHO05D006206 1.1e-57 226.9 137 79.6
Dinv29944 Davidia involucrata HOM05D005053 ORTHO05D006206 1.5e-57 226.5 141 81.6
Gohir.D12G090200 Gossypium hirsutum HOM05D005053 ORTHO05D006206 2.6e-57 225.7 137 78.1
Ca_22228_v3 Cicer arietinum L. HOM05D005053 ORTHO05D006206 7.4e-57 224.2 137 79.6
Duzib264G0045 Durio zibethinus HOM05D005053 ORTHO05D006206 1.3e-56 223.4 137 76.6
Duzib147G0596 Durio zibethinus HOM05D005053 ORTHO05D006206 8.2e-56 220.7 137 78.1
CiPaw.02G011700 Carya illinoinensis HOM05D005053 ORTHO05D006206 1.1e-55 220.3 137 78.1
TAR628G0491 Trochodendron aralioides HOM05D005053 ORTHO05D006206 1.4e-55 219.9 136 77.9
Dinv39902 Davidia involucrata HOM05D005053 ORTHO05D006206 3.1e-55 218.8 139 77.0
Duzib264G0685 Durio zibethinus HOM05D005053 ORTHO05D006206 4.1e-55 218.4 137 75.2
BcaC04g23174 Brassica carinata HOM05D005053 ORTHO05D006206 7.0e-55 217.6 165 67.9
C09p11390 Brassica napus HOM05D005053 ORTHO05D006206 7.0e-55 217.6 165 67.9
BraA09t36613Z Brassica rapa HOM05D005053 ORTHO05D006206 7.0e-55 217.6 164 67.7
A09p09640 Brassica napus HOM05D005053 ORTHO05D006206 1.2e-54 216.9 164 67.7
DCAR_025697 Daucus carota HOM05D005053 ORTHO05D006206 1.5e-54 216.5 135 80.7
Lj7A44T18 Lonicera japonica HOM05D005053 ORTHO05D006206 4.5e-54 214.9 136 80.1
SEGI_13826 Sequoiadendron giganteum HOM05D005053 ORTHO05D006206 4.5e-54 214.9 162 64.8
Rhsim08G0104900 Rhododendron simsii HOM05D005053 ORTHO05D006206 7.7e-54 214.2 243 52.3
BolC9t54027H Brassica oleracea HOM05D005053 ORTHO05D006206 1.3e-53 213.4 166 68.1
TWI53G1273 Tripterygium wilfordii HOM05D005053 ORTHO05D006206 1.3e-53 213.4 138 74.6
TWI09G0689 Tripterygium wilfordii HOM05D005053 ORTHO05D006206 2.9e-53 212.2 141 72.3
BcaC06g34767 Brassica carinata HOM05D005053 ORTHO05D006206 7.2e-52 207.6 164 65.9
C07p24820 Brassica napus HOM05D005053 ORTHO05D006206 7.2e-52 207.6 164 65.9
BolC7t43007H Brassica oleracea HOM05D005053 ORTHO05D006206 7.2e-52 207.6 164 65.9
HPP92_024294 Vanilla planifolia HOM05D005053 ORTHO05D006206 9.4e-52 207.2 164 67.1
HPP92_024303 Vanilla planifolia HOM05D005053 ORTHO05D006206 9.4e-52 207.2 164 67.1
BraA07t29424Z Brassica rapa HOM05D005053 ORTHO05D006206 3.6e-51 205.3 164 65.9
MBI16_g19902_MAGBIO Magnolia biondii HOM05D005053 ORTHO05D006206 4.7e-51 204.9 162 65.4
A07p16970 Brassica napus HOM05D005053 ORTHO05D006206 1.0e-50 203.8 164 65.2
BcaB02g09970 Brassica carinata HOM05D005053 ORTHO05D006206 3.0e-50 202.2 164 66.5
AUR62003832 Chenopodium quinoa HOM05D005053 ORTHO05D006206 6.7e-50 201.1 137 73.7
Os12g0428200 Oryza sativa ssp. japonica HOM05D005053 ORTHO05D006206 2.6e-49 199.1 162 61.7
RhsimUnG0070600 Rhododendron simsii HOM05D005053 ORTHO05D006206 5.7e-49 198.0 170 62.9
Nitab4.5_0009901g0010 Nicotiana tabacum HOM05D005053 ORTHO05D006206 1.3e-48 196.8 147 70.7
Ah.03g144090 Amaranthus hybridus HOM05D005053 ORTHO05D006206 2.8e-48 195.7 136 73.5
Mapoly0011s0084 Marchantia polymorpha HOM05D005053 ORTHO05D006206 2.8e-48 195.7 164 60.4
PGSC0003DMG400010070 Solanum tuberosum HOM05D005053 ORTHO05D006206 8.2e-48 194.1 155 65.2
Sabra07G0034100 Salix brachista HOM05D005053 ORTHO05D006206 1.8e-47 193.0 140 69.3
Sopen02g035010 Solanum pennellii HOM05D005053 ORTHO05D006206 2.4e-47 192.6 155 64.5
Solyc02g090330.3 Solanum lycopersicum HOM05D005053 ORTHO05D006206 4.1e-47 191.8 155 63.9
AagrBONN_evm.TU.Sc2ySwM_344.1821 Anthoceros agrestis HOM05D005053 ORTHO05D006206 9.1e-47 190.7 162 60.5
Peaxi162Scf00993g00120 Petunia axillaris HOM05D005053 ORTHO05D006206 1.3e-45 186.8 136 70.6
SMO271G0126 Selaginella moellendorffii HOM05D005053 ORTHO05D006206 2.5e-44 182.6 163 56.4
Nitab4.5_0002157g0070 Nicotiana tabacum HOM05D005053 ORTHO05D006206 3.6e-43 178.7 136 69.1
Zm00001eb184240 Zea mays HOM05D005053 ORTHO05D006206 1.4e-42 176.8 162 58.6
BcaC03g18393 Brassica carinata HOM05D005053 ORTHO05D006206 1.1e-39 167.2 170 58.2
C02p64670 Brassica napus HOM05D005053 ORTHO05D006206 1.1e-39 167.2 170 58.2
Pp3c11_5110 Physcomitrium patens HOM05D005053 ORTHO05D006206 1.4e-39 166.8 166 52.4
BolC2t12528H Brassica oleracea HOM05D005053 ORTHO05D006206 4.5e-38 161.8 165 58.2
Os12g0446700 Oryza sativa ssp. japonica HOM05D005053 ORTHO05D006206 1.5e-36 156.8 136 58.8
TPR.G672 Trifolium pratense HOM05D005053 ORTHO05D006206 2.5e-36 156.0 100 77.0
CBR_g23008 Chara braunii HOM05D005053 ORTHO05D006206 4.2e-36 155.2 162 46.9
Psat4g089040 Pisum sativum HOM05D005053 ORTHO05D006206 1.8e-34 149.8 136 58.1
AagrBONN_evm.TU.Sc2ySwM_344.1822 Anthoceros agrestis HOM05D005053 ORTHO05D006206 1.5e-33 146.7 165 47.9
Ciclev10027037m.g Citrus clementina HOM05D005053 ORTHO05D006206 2.4e-23 112.8 82 72.0
AagrBONN_evm.TU.Sc2ySwM_369.468 Anthoceros agrestis HOM05D000050 ORTHO05D000771 1.3e-21 107.1 162 41.4
Nitab4.5_0003750g0060 Nicotiana tabacum HOM05D005053 ORTHO05D006206 3.9e-21 105.5 136 44.9
AUR62028910 Chenopodium quinoa HOM05D005053 ORTHO05D006206 4.7e-19 98.6 93 53.8
SGA_v2.0_scaffold15G07238 Striga asiatica HOM05D005053 ORTHO05D006206 3.2e-15 85.9 172 37.2
MCO07G250 Micromonas commoda HOM05D005053 ORTHO05D006206 4.6e-14 82.0 163 29.4
PRCOL_00006110 Prasinoderma coloniale HOM05D005053 ORTHO05D006206 6.0e-14 81.6 134 34.3
CDE02G0556 Ceratophyllum demersum HOM05D005053 ORTHO05D006206 3.0e-13 79.3 90 46.7
CAN.G836.41 Capsicum annuum HOM05D005053 ORTHO05D024763 9.5e-12 74.3 143 40.6
Cre07.g334700 Chlamydomonas reinhardtii HOM05D005053 ORTHO05D006206 2.3e-10 69.7 185 27.6
TPR.G40637 Trifolium pratense HOM05D005053 ORTHO05D006206 6.8e-10 68.2 36 86.1
FAN19G1388 Fragaria x ananassa HOM05D005053 ORTHO05D006206 7.8e-06 54.7 27 92.6


User provided reference genes

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