Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.7G140100 Prunus persica HOM05D008738 ORTHO05D010755 9.5e-107 390.2 198 100.0
MD02G1163800 Malus domestica HOM05D008738 ORTHO05D010755 5.3e-81 304.7 195 81.5
CiPaw.02G010900 Carya illinoinensis HOM05D008738 ORTHO05D010755 3.1e-17 92.8 197 33.0
Haze_15455 Corylus avellana HOM05D008738 ORTHO05D010755 7.0e-17 91.7 135 37.0
Cfa003965 Carpinus fangiana HOM05D008738 ORTHO05D010755 1.0e-15 87.8 143 35.7
Haze_15456 Corylus avellana HOM05D008738 ORTHO05D010755 1.0e-15 87.8 134 35.8
CiPaw.02G011200 Carya illinoinensis HOM05D008738 ORTHO05D010755 1.2e-13 80.9 195 32.3
GSVIVG01003569001 Vitis vinifera HOM05D000529 ORTHO05D019823 2.3e-12 76.6 134 29.9
Thhalv10010714m.g Eutrema salsugineum HOM05D008738 ORTHO05D010755 4.0e-12 75.9 141 33.3
GSVIVG01003571001 Vitis vinifera HOM05D000529 ORTHO05D000472 4.0e-12 75.9 125 32.8
GSVIVG01007144001 Vitis vinifera HOM05D000529 ORTHO05D000472 4.0e-12 75.9 134 30.6
PSO210G7782 Papaver somniferum HOM05D000033 ORTHO05D030421 6.8e-12 75.1 132 30.3
Carub.0005s1680 Capsella rubella HOM05D008738 ORTHO05D010755 1.5e-11 73.9 141 32.6
AT3G50470 Arabidopsis thaliana HOM05D008738 ORTHO05D010755 2.0e-11 73.6 141 32.6
AL5G30620 Arabidopsis lyrata HOM05D008738 ORTHO05D010755 4.4e-11 72.4 141 31.9
COL.COLO4_11347 Corchorus olitorius HOM05D015225 ORTHO05D010755 4.4e-11 72.4 135 28.9
GSVIVG01003565001 Vitis vinifera HOM05D000529 ORTHO05D000472 5.7e-11 72.0 129 32.6
Medtr8g479450 Medicago truncatula HOM05D000529 ORTHO05D000472 9.8e-11 71.2 139 30.9
TAR381G0813 Trochodendron aralioides HOM05D000529 ORTHO05D000472 9.8e-11 71.2 155 31.0
BolC8t50176H Brassica oleracea HOM05D008738 ORTHO05D010755 1.7e-10 70.5 171 30.4
BraA09t39817Z Brassica rapa HOM05D008738 ORTHO05D010755 2.2e-10 70.1 171 28.7
C08p25550 Brassica napus HOM05D008738 ORTHO05D010755 2.8e-10 69.7 171 29.2
Dinv39897 Davidia involucrata HOM05D000529 ORTHO05D000472 2.8e-10 69.7 137 34.3
BcaB01g00613 Brassica carinata HOM05D008738 ORTHO05D010755 3.7e-10 69.3 141 31.9
Haze_15451 Corylus avellana HOM05D000529 ORTHO05D000472 3.7e-10 69.3 121 33.1
Medtr8g479430 Medicago truncatula HOM05D000529 ORTHO05D000472 4.9e-10 68.9 145 28.3
AT3G50450 Arabidopsis thaliana HOM05D008738 ORTHO05D010755 6.3e-10 68.6 152 32.9
BcaC07g39511 Brassica carinata HOM05D008738 ORTHO05D010755 1.1e-09 67.8 171 29.2
Cfa021022 Carpinus fangiana HOM05D000529 ORTHO05D010311 1.1e-09 67.8 130 30.8
AL5G30600 Arabidopsis lyrata HOM05D008738 ORTHO05D010755 1.4e-09 67.4 144 33.3
Sabra07G0034800 Salix brachista HOM05D000529 ORTHO05D000472 1.4e-09 67.4 123 31.7
BcaB01g00614 Brassica carinata HOM05D008738 ORTHO05D010755 1.8e-09 67.0 141 29.8
Duzib147G1638 Durio zibethinus HOM05D000529 ORTHO05D000472 1.8e-09 67.0 136 30.9
Sabra07G0034700 Salix brachista HOM05D000529 ORTHO05D000472 1.8e-09 67.0 113 32.7
BcaC07g39509 Brassica carinata HOM05D008738 ORTHO05D010755 3.1e-09 66.2 135 30.4
Duzib264G0733 Durio zibethinus HOM05D015225 ORTHO05D009609 3.1e-09 66.2 128 31.2
GSVIVG01003555001 Vitis vinifera HOM05D000529 ORTHO05D000472 3.1e-09 66.2 140 31.4
BraA09t39816Z Brassica rapa HOM05D008738 ORTHO05D010755 4.1e-09 65.9 141 28.4
A09p43530 Brassica napus HOM05D008738 ORTHO05D010755 9.2e-09 64.7 171 28.7
Manes.12G094100 Manihot esculenta HOM05D000529 ORTHO05D000472 9.2e-09 64.7 157 31.2
Nn5g29352 Nelumbo nucifera HOM05D000529 ORTHO05D000472 9.2e-09 64.7 157 29.3
GSVIVG01007146001 Vitis vinifera HOM05D000529 ORTHO05D000472 1.2e-08 64.3 140 31.4
Aa31LG4G18690 Aethionema arabicum HOM05D008738 ORTHO05D010755 2.0e-08 63.5 147 29.3
A09p43510 Brassica napus HOM05D008738 ORTHO05D010755 2.0e-08 63.5 141 27.7
FAN28G0376 Fragaria x ananassa HOM05D000529 ORTHO05D000472 2.0e-08 63.5 99 31.3
FAN28G1580 Fragaria x ananassa HOM05D000529 ORTHO05D000472 2.0e-08 63.5 99 31.3
MD06G1115400 Malus domestica HOM05D000529 ORTHO05D025806 2.0e-08 63.5 117 32.5
Phvul.003G247601 Phaseolus vulgaris HOM05D000529 ORTHO05D000472 2.0e-08 63.5 134 29.1
AL5G30630 Arabidopsis lyrata HOM05D008738 ORTHO05D010755 2.7e-08 63.2 142 31.0
COL.COLO4_11350 Corchorus olitorius HOM05D000529 ORTHO05D000472 2.7e-08 63.2 133 28.6
Duzib264G0020 Durio zibethinus HOM05D000529 ORTHO05D000472 3.5e-08 62.8 137 32.8
A09p43500 Brassica napus HOM05D008738 ORTHO05D010755 4.5e-08 62.4 135 30.4
Ciclev10018897m.g Citrus clementina HOM05D000529 ORTHO05D000472 4.5e-08 62.4 152 30.9
Ciclev10024907m.g Citrus clementina HOM05D000529 ORTHO05D000472 4.5e-08 62.4 152 31.6
MD06G1115200 Malus domestica HOM05D000081 ORTHO05D000036 4.5e-08 62.4 117 31.6
Manes.12G094300 Manihot esculenta HOM05D058365 ORTHO05D010755 4.5e-08 62.4 124 33.1
Psat4g088680 Pisum sativum HOM05D000529 ORTHO05D000472 4.5e-08 62.4 115 33.9
BraA09t39815Z Brassica rapa HOM05D008738 ORTHO05D010755 7.7e-08 61.6 135 30.4
BcaC06g33094 Brassica carinata HOM05D008738 ORTHO05D010755 1.0e-07 61.2 141 29.1
FvH4_1g15160 Fragaria vesca HOM05D000529 ORTHO05D000472 1.3e-07 60.8 99 31.3
FAN19G2554 Fragaria x ananassa HOM05D000529 ORTHO05D000472 1.3e-07 60.8 99 31.3
Manes.12G094400 Manihot esculenta HOM05D058365 ORTHO05D010755 1.3e-07 60.8 127 31.5
COL.COLO4_11346 Corchorus olitorius HOM05D015225 ORTHO05D009609 1.7e-07 60.5 131 33.6
Dinv29949 Davidia involucrata HOM05D000529 ORTHO05D000472 1.7e-07 60.5 142 28.2
Sabra07G0034600 Salix brachista HOM05D037871 ORTHO05D010755 1.7e-07 60.5 137 27.0
QL06p042852 Quercus lobata HOM05D000529 ORTHO05D000472 2.3e-07 60.1 134 27.6
Manes.13G128600 Manihot esculenta HOM05D000529 ORTHO05D000472 2.9e-07 59.7 134 32.8
RcHm_v2.0_Chr2g0104381 Rosa chinensis HOM05D000529 ORTHO05D000472 2.9e-07 59.7 105 34.3
DCAR_010928 Daucus carota HOM05D000529 ORTHO05D000472 3.8e-07 59.3 169 28.4
RcHm_v2.0_Chr2g0104611 Rosa chinensis HOM05D000046 ORTHO05D000472 3.8e-07 59.3 150 26.7
CARHR159990 Cardamine hirsuta HOM05D008738 ORTHO05D010755 5.0e-07 58.9 144 29.2
MD15G1277400 Malus domestica HOM05D000529 ORTHO05D000472 5.0e-07 58.9 110 30.0
MD15G1277700 Malus domestica HOM05D000529 ORTHO05D000472 5.0e-07 58.9 104 28.8
Prupe.7G139100 Prunus persica HOM05D000529 ORTHO05D000472 5.0e-07 58.9 110 28.2
RcHm_v2.0_Chr2g0143661 Rosa chinensis HOM05D003771 ORTHO05D010311 5.0e-07 58.9 117 29.9
MELO3C007539.2 Cucumis melo HOM05D000529 ORTHO05D000472 6.6e-07 58.5 139 29.5
Lj4g0018288 Lotus japonicus HOM05D000529 ORTHO05D000472 6.6e-07 58.5 125 27.2
Cc07_g05700 Coffea canephora HOM05D000529 ORTHO05D000472 8.6e-07 58.2 133 28.6
QL01p034712 Quercus lobata HOM05D000529 ORTHO05D000472 8.6e-07 58.2 145 29.0
QL06p043050 Quercus lobata HOM05D000529 ORTHO05D000472 8.6e-07 58.2 134 26.9
GSVIVG01003572001 Vitis vinifera HOM05D000529 ORTHO05D000472 8.6e-07 58.2 132 27.3
arahy.Tifrunner.gnm1.ann1.FT124Y Arachis hypogaea HOM05D000529 ORTHO05D000472 1.1e-06 57.8 162 28.4
DCAR_021433 Daucus carota HOM05D000529 ORTHO05D000472 1.1e-06 57.8 122 31.1
Prupe.7G139800 Prunus persica HOM05D000529 ORTHO05D000472 1.1e-06 57.8 105 30.5
QL06p043036 Quercus lobata HOM05D000529 ORTHO05D000472 1.1e-06 57.8 132 28.8
FvH4_1g15120 Fragaria vesca HOM05D000529 ORTHO05D000472 1.5e-06 57.4 115 30.4
Solyc02g090380.4 Solanum lycopersicum HOM05D000529 ORTHO05D000472 1.5e-06 57.4 155 29.7
Sopen02g035080 Solanum pennellii HOM05D000529 ORTHO05D000472 1.5e-06 57.4 159 29.6
Dinv29950 Davidia involucrata HOM05D000529 ORTHO05D000472 1.9e-06 57.0 141 28.4
FAN09G3823 Fragaria x ananassa HOM05D000529 ORTHO05D000472 1.9e-06 57.0 138 27.5
FAN23G2222 Fragaria x ananassa HOM05D000529 ORTHO05D000472 1.9e-06 57.0 131 29.0
Lj4g0017861 Lotus japonicus HOM05D000529 ORTHO05D000472 1.9e-06 57.0 134 26.9
arahy.Tifrunner.gnm1.ann1.BJ32EB Arachis hypogaea HOM05D000529 ORTHO05D000472 2.5e-06 56.6 162 28.4
QL06p043260 Quercus lobata HOM05D000529 ORTHO05D000472 2.5e-06 56.6 134 27.6
CiPaw.01G024000 Carya illinoinensis HOM05D000529 ORTHO05D000472 3.3e-06 56.2 129 27.1
FAN26G0958 Fragaria x ananassa HOM05D000529 ORTHO05D000472 3.3e-06 56.2 143 27.3
MD02G1166300 Malus domestica HOM05D000529 ORTHO05D000472 3.3e-06 56.2 110 30.0
Prupe.5G127600 Prunus persica HOM05D000529 ORTHO05D010311 3.3e-06 56.2 122 32.0
TWI09G1247 Tripterygium wilfordii HOM05D000529 ORTHO05D000472 3.3e-06 56.2 131 28.2
MD02G1165600 Malus domestica HOM05D000529 ORTHO05D000472 4.3e-06 55.8 98 31.6
QL06p042786 Quercus lobata HOM05D000529 ORTHO05D000472 4.3e-06 55.8 134 28.4
QL06p042817 Quercus lobata HOM05D000529 ORTHO05D000472 4.3e-06 55.8 134 28.4
ECA238G2361 Erigeron canadensis HOM05D000529 ORTHO05D000472 5.6e-06 55.5 132 29.5
FvH4_1g15170 Fragaria vesca HOM05D000529 ORTHO05D000472 5.6e-06 55.5 136 30.1
QL04p095514 Quercus lobata HOM05D000083 ORTHO05D002708 5.6e-06 55.5 114 30.7
RcHm_v2.0_Chr2g0104151 Rosa chinensis HOM05D000529 ORTHO05D000472 5.6e-06 55.5 131 27.5
CARHR159980 Cardamine hirsuta HOM05D008738 ORTHO05D010755 7.3e-06 55.1 143 30.1
CiPaw.01G024500 Carya illinoinensis HOM05D000529 ORTHO05D000472 7.3e-06 55.1 116 28.4
FAN08G1780 Fragaria x ananassa HOM05D000529 ORTHO05D010311 7.3e-06 55.1 122 29.5
Lj4g0026036 Lotus japonicus HOM05D000529 ORTHO05D000472 7.3e-06 55.1 130 27.7
Prupe.5G127700 Prunus persica HOM05D000529 ORTHO05D010311 7.3e-06 55.1 115 30.4
arahy.Tifrunner.gnm1.ann1.4KB2JU Arachis hypogaea HOM05D000529 ORTHO05D000472 9.5e-06 54.7 173 26.0
Prupe.7G139500 Prunus persica HOM05D000529 ORTHO05D000472 9.5e-06 54.7 111 30.6
QL06p042956 Quercus lobata HOM05D000529 ORTHO05D000472 9.5e-06 54.7 113 31.9


User provided reference genes

Program Settings