Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.7G135500 Prunus persica HOM05D005929 ORTHO05D007869 0.0e+00 1360.1 725 100.0
MD00G1045200 Malus domestica HOM05D005929 ORTHO05D007869 0.0e+00 1157.5 731 87.0
MD02G1169700 Malus domestica HOM05D005929 ORTHO05D007869 0.0e+00 1147.9 731 85.8
RcHm_v2.0_Chr2g0105071 Rosa chinensis HOM05D005929 ORTHO05D007869 0.0e+00 1098.6 727 82.5
FvH4_1g15790 Fragaria vesca HOM05D005929 ORTHO05D007869 0.0e+00 1080.9 726 81.3
FAN28G0152 Fragaria x ananassa HOM05D005929 ORTHO05D007869 0.0e+00 1080.1 726 80.7
FAN19G1416 Fragaria x ananassa HOM05D005929 ORTHO05D007869 0.0e+00 1079.7 726 81.1
FAN26G1042 Fragaria x ananassa HOM05D005929 ORTHO05D007869 5.0e-312 1073.9 726 80.2
FAN23G0057 Fragaria x ananassa HOM05D005929 ORTHO05D007869 9.9e-312 1072.8 726 79.9
Manes.12G099700 Manihot esculenta HOM05D005929 ORTHO05D007869 1.7e-299 1032.3 727 76.6
Cfa004003 Carpinus fangiana HOM05D005929 ORTHO05D007869 6.9e-296 1020.4 730 77.8
Dinv39868 Davidia involucrata HOM05D005929 ORTHO05D007869 4.8e-289 997.7 730 75.9
CSS0000081 Camellia sinensis var. sinensis HOM05D005929 ORTHO05D007869 5.3e-288 994.2 729 74.8
Potri.005G137100 Populus trichocarpa HOM05D005929 ORTHO05D007869 4.5e-287 991.1 727 73.2
CANSAT56G1082 Cannabis sativa HOM05D005929 ORTHO05D007869 3.8e-286 988.0 732 74.2
GSVIVG01022148001 Vitis vinifera HOM05D005929 ORTHO05D007869 1.1e-285 986.5 725 73.9
Ciclev10025029m.g Citrus clementina HOM05D005929 ORTHO05D007869 2.1e-284 982.2 726 73.4
Sabra05G0109600 Salix brachista HOM05D005929 ORTHO05D007869 5.3e-280 967.6 727 72.1
Actinidia16503 Actinidia chinensis HOM05D005929 ORTHO05D007869 6.9e-280 967.2 727 72.8
Lj4g0006502 Lotus japonicus HOM05D005929 ORTHO05D007869 7.6e-279 963.8 724 72.7
Glyma.17G175900 Glycine max HOM05D005929 ORTHO05D007869 1.7e-278 962.6 725 71.6
Lalb_Chr05g0226621 Lupinus albus HOM05D005929 ORTHO05D007869 1.7e-278 962.6 725 69.0
VMungo0251G2155 Vigna mungo HOM05D005929 ORTHO05D007869 2.2e-278 962.2 728 70.2
TPR.G19031 Trifolium pratense HOM05D005929 ORTHO05D007869 8.4e-278 960.3 727 70.6
ClCG01G016760 Citrullus lanatus HOM05D005929 ORTHO05D007869 9.3e-277 956.8 726 70.7
Ca_21176_v3 Cicer arietinum L. HOM05D005929 ORTHO05D007869 2.7e-276 955.3 728 70.7
Glyma.05G084300 Glycine max HOM05D005929 ORTHO05D007869 1.0e-275 953.4 727 69.9
CiPaw.01G019600 Carya illinoinensis HOM05D005929 ORTHO05D007869 1.3e-275 953.0 729 72.8
Phvul.003G244900 Phaseolus vulgaris HOM05D005929 ORTHO05D007869 1.3e-275 953.0 727 69.2
Psat4g087280 Pisum sativum HOM05D005929 ORTHO05D007869 1.3e-275 953.0 727 70.0
TAR628G1297 Trochodendron aralioides HOM05D005929 ORTHO05D007869 1.5e-274 949.5 730 71.8
COL.COLO4_11392 Corchorus olitorius HOM05D005929 ORTHO05D007869 5.3e-272 941.0 727 70.4
MBI06_g04503_MAGBIO Magnolia biondii HOM05D005929 ORTHO05D007869 2.6e-271 938.7 743 70.5
CiPaw.02G008900 Carya illinoinensis HOM05D005929 ORTHO05D007869 3.4e-271 938.3 728 71.7
Gorai.007G211400 Gossypium raimondii HOM05D005929 ORTHO05D007869 1.3e-270 936.4 728 69.0
CsaV3_6G043190 Cucumis sativus L. HOM05D005929 ORTHO05D007869 1.7e-270 936.0 725 70.3
TWI09G0459 Tripterygium wilfordii HOM05D005929 ORTHO05D007869 1.4e-269 932.9 727 71.0
MELO3C007555.2 Cucumis melo HOM05D005929 ORTHO05D007869 2.5e-269 932.2 725 70.2
Thecc.01G053700 Theobroma cacao HOM05D005929 ORTHO05D007869 4.2e-269 931.4 725 70.2
TWI53G1997 Tripterygium wilfordii HOM05D005929 ORTHO05D007869 1.2e-268 929.9 725 69.1
Duzib147G0952 Durio zibethinus HOM05D005929 ORTHO05D007869 2.7e-268 928.7 730 68.6
Sed0025648 Sechium edule HOM05D005929 ORTHO05D007869 2.5e-266 922.2 729 68.9
Nn1g05837 Nelumbo nucifera HOM05D005929 ORTHO05D007869 3.3e-266 921.8 730 70.4
Gorai.003G022900 Gossypium raimondii HOM05D005929 ORTHO05D007869 8.2e-265 917.1 725 68.0
Gohir.D03G021300 Gossypium hirsutum HOM05D005929 ORTHO05D007869 1.5e-263 912.9 725 67.9
PGR102G2065 Punica granatum HOM05D005929 ORTHO05D007869 4.2e-261 904.8 729 68.0
Gohir.A02G159200 Gossypium hirsutum HOM05D005929 ORTHO05D007869 9.4e-261 903.7 725 67.3
Gohir.A11G190800 Gossypium hirsutum HOM05D005929 ORTHO05D007869 2.7e-260 902.1 728 67.9
arahy.Tifrunner.gnm1.ann1.UKY0C7 Arachis hypogaea HOM05D005929 ORTHO05D007869 4.1e-256 888.3 802 63.7
Atru.chr3.351 Acer truncatum HOM05D005929 ORTHO05D007869 6.9e-256 887.5 636 75.2
Lj4A143G78 Lonicera japonica HOM05D005929 ORTHO05D007869 9.1e-256 887.1 729 68.3
Gohir.D11G197600 Gossypium hirsutum HOM05D005929 ORTHO05D007869 1.3e-254 883.2 728 67.4
Rhsim08G0101600 Rhododendron simsii HOM05D005929 ORTHO05D007869 4.2e-253 878.2 948 55.3
Eucgr.H02007 Eucalyptus grandis HOM05D005929 ORTHO05D007869 4.7e-252 874.8 732 67.6
Cc07_g05890 Coffea canephora HOM05D005929 ORTHO05D007869 6.1e-252 874.4 725 65.9
Hund13561 Selenicereus undatus HOM05D005929 ORTHO05D007869 3.0e-251 872.1 731 68.0
DCAR_010904 Daucus carota HOM05D005929 ORTHO05D007869 1.8e-248 862.8 726 66.7
EL10Ac6g15157 Beta vulgaris HOM05D005929 ORTHO05D007869 5.3e-248 861.3 734 67.0
THA.LOC104821272 Tarenaya hassleriana HOM05D005929 ORTHO05D007869 3.8e-246 855.1 729 65.3
Migut.H00446 Erythranthe guttata HOM05D005929 ORTHO05D007869 1.9e-245 852.8 726 63.9
Sc03g0001480 Simmondsia chinensis HOM05D005929 ORTHO05D007869 3.2e-245 852.0 729 64.3
PSO170G4100 Papaver somniferum HOM05D005929 ORTHO05D007869 2.7e-244 849.0 731 63.5
QL06p041881 Quercus lobata HOM05D005929 ORTHO05D007869 4.7e-244 848.2 593 77.4
PSO210G3061 Papaver somniferum HOM05D005929 ORTHO05D007869 3.0e-243 845.5 731 63.3
MSTRG.23760 Avicennia marina HOM05D005929 ORTHO05D007869 5.3e-240 834.7 727 64.2
PGSC0003DMG400015776 Solanum tuberosum HOM05D005929 ORTHO05D007869 3.2e-237 825.5 726 65.4
Solyc02g090650.4 Solanum lycopersicum HOM05D005929 ORTHO05D007869 4.0e-235 818.5 722 65.5
vmacro17944 Vaccinium macrocarpon HOM05D005929 ORTHO05D007869 5.2e-235 818.1 934 53.1
HanXRQChr15g0490721 Helianthus annuus HOM05D005929 ORTHO05D007869 7.5e-234 814.3 726 64.3
Nitab4.5_0010605g0010 Nicotiana tabacum HOM05D005929 ORTHO05D007869 7.5e-234 814.3 734 63.4
Sopen02g035300 Solanum pennellii HOM05D005929 ORTHO05D007869 7.5e-234 814.3 726 65.2
Oeu039068.2 Olea europaea HOM05D005929 ORTHO05D007869 1.7e-233 813.1 759 60.1
Aa31LG1G15360 Aethionema arabicum HOM05D005929 ORTHO05D007869 1.1e-232 810.4 775 59.7
Lsat_1_v5_gn_4_168021 Lactuca sativa HOM05D005929 ORTHO05D007869 1.8e-232 809.7 717 64.4
ECA232G2456 Erigeron canadensis HOM05D005929 ORTHO05D007869 2.4e-232 809.3 729 64.2
SGA_v2.0_scaffold15G07274 Striga asiatica HOM05D005929 ORTHO05D007869 4.1e-232 808.5 726 61.6
Thhalv10003742m.g Eutrema salsugineum HOM05D005929 ORTHO05D007869 5.4e-232 808.1 731 59.9
Peaxi162Scf00964g00160 Petunia axillaris HOM05D005929 ORTHO05D007869 2.3e-230 802.7 733 62.2
CAN.G836.71 Capsicum annuum HOM05D005929 ORTHO05D007869 6.1e-228 794.7 728 64.4
Sp2g29870 Schrenkiella parvula HOM05D005929 ORTHO05D007869 3.4e-226 788.9 732 59.6
Nitab4.5_0000310g0090 Nicotiana tabacum HOM05D005929 ORTHO05D007869 1.4e-224 783.5 736 62.5
AL8G44640 Arabidopsis lyrata HOM05D005929 ORTHO05D007869 4.5e-223 778.5 732 60.4
HPP92_009382 Vanilla planifolia HOM05D005929 ORTHO05D007869 1.9e-221 773.1 731 61.0
Carub.0008s2770 Capsella rubella HOM05D005929 ORTHO05D007869 5.6e-221 771.5 732 60.9
ATR0100G001 Amborella trichopoda HOM05D005929 ORTHO05D007869 1.8e-219 766.5 731 58.4
Aqoxy5G01270 Aquilegia oxysepala HOM05D005929 ORTHO05D007869 8.9e-219 764.2 718 61.8
BraA07t29438Z Brassica rapa HOM05D005929 ORTHO05D007869 8.9e-219 764.2 731 57.9
C07p24970 Brassica napus HOM05D005929 ORTHO05D007869 7.5e-218 761.1 731 57.6
A07p17110 Brassica napus HOM05D005929 ORTHO05D007869 8.3e-217 757.7 732 57.7
BcaC06g34750 Brassica carinata HOM05D005929 ORTHO05D007869 3.2e-216 755.7 731 57.2
Ca_22183_v3 Cicer arietinum L. HOM05D005929 ORTHO05D007869 2.7e-215 752.7 590 69.0
BolC7t43027H Brassica oleracea HOM05D005929 ORTHO05D007869 2.1e-212 743.0 755 55.4
BcaB02g09988 Brassica carinata HOM05D005929 ORTHO05D007869 1.2e-210 737.3 732 57.0
Os10g0382300 Oryza sativa ssp. japonica HOM05D005929 ORTHO05D007869 3.2e-208 729.2 734 57.5
Zm00001eb223840 Zea mays HOM05D005929 ORTHO05D007869 2.3e-206 723.0 730 58.2
unitig_899.g14965 Utricularia gibba HOM05D005929 ORTHO05D007869 6.2e-204 714.9 760 57.4
Cpa.g.sc55.172 Carica papaya HOM05D005929 ORTHO05D007869 8.1e-204 714.5 553 70.0
Hma1.2p1_0200F.1_g086000 Hydrangea macrophylla HOM05D005929 ORTHO05D007869 1.8e-203 713.4 586 67.9
AUR62003860 Chenopodium quinoa HOM05D005929 ORTHO05D007869 1.3e-201 707.2 625 62.4
AUR62001947 Chenopodium quinoa HOM05D005929 ORTHO05D007869 5.4e-200 701.8 621 62.5
Duzib264G1189 Durio zibethinus HOM05D005929 ORTHO05D007869 1.7e-198 696.8 722 56.0
Lalb_Chr09g0333751 Lupinus albus HOM05D005929 ORTHO05D007869 6.8e-195 684.9 535 66.7
Ah.03g144730 Amaranthus hybridus HOM05D005929 ORTHO05D007869 1.4e-179 634.0 599 61.3
CARHR280890 Cardamine hirsuta HOM05D005929 ORTHO05D007869 1.1e-171 607.8 598 57.2
AT5G66810 Arabidopsis thaliana HOM05D005929 ORTHO05D007869 3.1e-155 553.1 521 60.5
Pp3c4_14260 Physcomitrium patens HOM05D005929 ORTHO05D007869 2.1e-135 487.3 781 42.6
Mapoly0148s0013 Marchantia polymorpha HOM05D005929 ORTHO05D007869 5.3e-131 472.6 798 40.0
Haze_15421 Corylus avellana HOM05D005929 ORTHO05D007869 5.5e-120 436.0 466 57.7
SMO116G0373 Selaginella moellendorffii HOM05D005929 ORTHO05D007869 2.5e-112 410.6 732 37.0
SalBow1G6022 Salvia bowleyana HOM05D005929 ORTHO05D007869 4.9e-100 369.8 352 57.4
CDE10G0678 Ceratophyllum demersum HOM05D005929 ORTHO05D007869 6.6e-97 359.4 289 64.0
CDE10G0504 Ceratophyllum demersum HOM05D005929 ORTHO05D007869 1.6e-90 338.2 449 48.8
SEGI_10908 Sequoiadendron giganteum HOM05D005929 ORTHO05D000002 2.8e-79 300.8 452 43.8
Hma1.2p1_0200F.1_g086010 Hydrangea macrophylla HOM05D005929 ORTHO05D007869 6.8e-78 296.2 311 56.6
RcHm_v2.0_Chr7g0235891 Rosa chinensis HOM05D005929 ORTHO05D007869 2.7e-66 257.7 196 69.4
PSO782G4943 Papaver somniferum HOM05D005929 ORTHO05D007869 7.6e-61 239.6 182 69.8
Dinv29975 Davidia involucrata HOM05D005929 ORTHO05D007869 4.3e-56 223.8 369 42.8
DCAR_001419 Daucus carota HOM05D005929 ORTHO05D007869 3.1e-54 217.6 288 46.5
PSO339G4212 Papaver somniferum HOM05D005929 ORTHO05D007869 1.1e-46 192.6 154 63.0
MD15G1282000 Malus domestica HOM05D005929 ORTHO05D007869 4.0e-46 190.7 107 95.3
Lalb_Chr09g0333761 Lupinus albus HOM05D005929 ORTHO05D007869 6.9e-46 189.9 160 71.2
MD15G1282100 Malus domestica HOM05D005929 ORTHO05D007869 6.1e-42 176.8 97 92.8
QL06p041873 Quercus lobata HOM05D005929 ORTHO05D007869 6.1e-42 176.8 134 78.4
Cpa.g.sc55.170 Carica papaya HOM05D005929 ORTHO05D007869 8.7e-41 172.9 133 76.7
QL06p041946 Quercus lobata HOM05D005929 ORTHO05D007869 1.2e-34 152.5 143 58.7
ATR0833G001 Amborella trichopoda HOM05D005929 ORTHO05D007869 4.1e-30 137.5 133 57.1
Lsat_1_v5_gn_2_14601 Lactuca sativa HOM05D005929 ORTHO05D029973 1.4e-27 129.0 160 51.9
MBI08_g05057_MAGBIO Magnolia biondii HOM05D005929 ORTHO05D029973 2.2e-23 115.2 110 55.5
Lsat_1_v5_gn_2_40080 Lactuca sativa HOM05D005929 ORTHO05D029973 1.7e-07 62.4 125 39.2
MBI16_g22817_MAGBIO Magnolia biondii HOM05D005929 ORTHO05D029973 3.1e-06 58.2 35 82.9


User provided reference genes

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