Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.7G133700 Prunus persica HOM05D004996 ORTHO05D005844 3.9e-182 641.3 323 100.0
MD15G1283600 Malus domestica HOM05D004996 ORTHO05D005844 6.7e-150 534.3 327 83.2
RcHm_v2.0_Chr1g0334851 Rosa chinensis HOM05D004996 ORTHO05D005844 1.8e-134 483.0 324 77.2
FvH4_7g06480 Fragaria vesca HOM05D004996 ORTHO05D005844 8.5e-129 464.2 323 74.9
FAN10G3007 Fragaria x ananassa HOM05D004996 ORTHO05D005844 1.4e-128 463.4 323 74.3
FAN06G0805 Fragaria x ananassa HOM05D004996 ORTHO05D005844 2.3e-126 456.1 323 73.7
Cfa004020 Carpinus fangiana HOM05D004996 ORTHO05D005844 2.0e-122 443.0 320 69.1
FAN01G0777 Fragaria x ananassa HOM05D004996 ORTHO05D005844 1.7e-121 439.9 339 70.2
QL06p041440 Quercus lobata HOM05D004996 ORTHO05D005844 2.6e-117 426.0 282 73.8
Thecc.01G055400 Theobroma cacao HOM05D004996 ORTHO05D005844 6.9e-115 417.9 325 65.2
Duzib147G0592 Durio zibethinus HOM05D004996 ORTHO05D005844 1.2e-114 417.2 333 63.7
COL.COLO4_11407 Corchorus olitorius HOM05D004996 ORTHO05D005844 3.4e-114 415.6 266 72.9
Haze_16999 Corylus avellana HOM05D004996 ORTHO05D005844 1.0e-113 414.1 276 72.5
Manes.13G124600 Manihot esculenta HOM05D004996 ORTHO05D005844 1.7e-113 413.3 324 64.8
Duzib187G0496 Durio zibethinus HOM05D004996 ORTHO05D005844 2.2e-113 412.9 330 63.9
Haze_16997 Corylus avellana HOM05D004996 ORTHO05D005844 2.9e-113 412.5 268 73.9
Sabra07G0038500 Salix brachista HOM05D004996 ORTHO05D005844 1.1e-112 410.6 326 65.6
CiPaw.02G008500 Carya illinoinensis HOM05D004996 ORTHO05D005844 2.7e-111 406.0 321 64.8
Potri.007G043600 Populus trichocarpa HOM05D004996 ORTHO05D005844 1.8e-110 403.3 317 64.7
HanXRQChr14g0442821 Helianthus annuus HOM05D004996 ORTHO05D005844 5.2e-110 401.7 304 69.1
TWI73G1146 Tripterygium wilfordii HOM05D004996 ORTHO05D005844 2.6e-109 399.4 323 65.3
Ciclev10026041m.g Citrus clementina HOM05D004996 ORTHO05D005844 3.3e-109 399.1 319 63.3
Hma1.2p1_0200F.1_g085840 Hydrangea macrophylla HOM05D004996 ORTHO05D005844 1.4e-107 393.7 326 65.0
Hma1.2p1_2839F.1_g329295 Hydrangea macrophylla HOM05D004996 ORTHO05D005844 1.4e-107 393.7 326 65.0
Lj7A69G43 Lonicera japonica HOM05D004996 ORTHO05D005844 5.3e-107 391.7 276 70.3
GSVIVG01022135001 Vitis vinifera HOM05D004996 ORTHO05D005844 5.3e-107 391.7 324 61.1
Gohir.A11G192100 Gossypium hirsutum HOM05D004996 ORTHO05D005844 1.6e-106 390.2 323 62.5
Eucgr.I00930 Eucalyptus grandis HOM05D004996 ORTHO05D005844 3.5e-106 389.0 338 59.8
Lsat_1_v5_gn_2_84140 Lactuca sativa HOM05D004996 ORTHO05D005844 1.3e-105 387.1 301 66.8
Rhsim08G0100700 Rhododendron simsii HOM05D004996 ORTHO05D005844 2.2e-105 386.3 338 62.1
LjContig00272g0020566 Lotus japonicus HOM05D004996 ORTHO05D005844 6.5e-105 384.8 269 67.3
VMungo0647G1648 Vigna mungo HOM05D004996 ORTHO05D005844 6.5e-105 384.8 310 64.2
Gohir.D11G198600 Gossypium hirsutum HOM05D004996 ORTHO05D005844 1.1e-104 384.0 283 65.7
LjContig00272g0002438 Lotus japonicus HOM05D004996 ORTHO05D005844 1.1e-104 384.0 269 67.3
Medtr5g096150 Medicago truncatula HOM05D004996 ORTHO05D005844 1.1e-104 384.0 301 60.8
DCAR_021441 Daucus carota HOM05D004996 ORTHO05D005844 7.2e-104 381.3 276 68.1
Gorai.007G212700 Gossypium raimondii HOM05D004996 ORTHO05D005844 9.4e-104 380.9 318 61.3
Glyma.02G301700 Glycine max HOM05D004996 ORTHO05D005844 1.6e-103 380.2 312 63.5
Glyma.14G012500 Glycine max HOM05D004996 ORTHO05D005844 2.1e-103 379.8 310 62.9
Ca_05570_v3 Cicer arietinum L. HOM05D004996 ORTHO05D005844 6.1e-103 378.3 317 58.4
Psat2g006800 Pisum sativum HOM05D004996 ORTHO05D005844 6.1e-103 378.3 306 60.1
CAN.G11.7 Capsicum annuum HOM05D004996 ORTHO05D005844 2.3e-102 376.3 308 60.7
Nitab4.5_0000033g0420 Nicotiana tabacum HOM05D004996 ORTHO05D005844 4.0e-102 375.6 303 61.7
Phvul.008G280200 Phaseolus vulgaris HOM05D004996 ORTHO05D005844 8.8e-102 374.4 303 64.0
Sc07g0000030 Simmondsia chinensis HOM05D004996 ORTHO05D005844 3.3e-101 372.5 303 63.4
Nitab4.5_0001064g0040 Nicotiana tabacum HOM05D004996 ORTHO05D005844 7.5e-101 371.3 308 61.0
Oeu004826.1 Olea europaea HOM05D004996 ORTHO05D005844 9.7e-101 370.9 302 59.9
Lalb_Chr17g0348991 Lupinus albus HOM05D004996 ORTHO05D005844 1.3e-100 370.5 269 68.0
PGSC0003DMG400018987 Solanum tuberosum HOM05D004996 ORTHO05D005844 2.2e-100 369.8 266 66.5
Actinidia16491 Actinidia chinensis HOM05D004996 ORTHO05D005844 3.7e-100 369.0 275 65.5
ECA238G3150 Erigeron canadensis HOM05D004996 ORTHO05D005844 3.7e-100 369.0 288 65.6
Solyc03g044470.4 Solanum lycopersicum HOM05D004996 ORTHO05D005844 3.7e-100 369.0 297 61.3
Sopen03g008630 Solanum pennellii HOM05D004996 ORTHO05D005844 3.7e-100 369.0 297 61.3
TAR376G0493 Trochodendron aralioides HOM05D004996 ORTHO05D005844 8.2e-100 367.9 323 59.4
Phvul.008G280300 Phaseolus vulgaris HOM05D004996 ORTHO05D005844 1.4e-99 367.1 269 66.9
PGR004G2460 Punica granatum HOM05D004996 ORTHO05D005844 2.4e-99 366.3 270 66.3
LjContig00081g0020523 Lotus japonicus HOM05D004996 ORTHO05D005844 4.1e-99 365.5 285 63.2
CANSAT01G2652 Cannabis sativa HOM05D004996 ORTHO05D005844 5.9e-98 361.7 276 62.3
MSTRG.23749 Avicennia marina HOM05D004996 ORTHO05D005844 1.3e-97 360.5 320 57.5
Cc03_g11370 Coffea canephora HOM05D004996 ORTHO05D005844 1.7e-97 360.1 309 59.2
Peaxi162Scf00685g00059 Petunia axillaris HOM05D004996 ORTHO05D005844 3.2e-96 355.9 299 61.5
arahy.Tifrunner.gnm1.ann1.X0LXK2 Arachis hypogaea HOM05D004996 ORTHO05D005844 4.2e-96 355.5 295 60.0
Cpa.g.sc55.151 Carica papaya HOM05D004996 ORTHO05D005844 3.6e-95 352.4 317 58.4
TPR.G36603 Trifolium pratense HOM05D004996 ORTHO05D005844 3.6e-95 352.4 321 57.0
SalBow6G7153 Salvia bowleyana HOM05D004996 ORTHO05D005844 8.0e-95 351.3 300 58.3
Migut.H00434 Erythranthe guttata HOM05D004996 ORTHO05D005844 1.0e-94 350.9 300 58.7
Nn7g36483 Nelumbo nucifera HOM05D004996 ORTHO05D005844 1.8e-94 350.1 308 58.8
Sed0024126 Sechium edule HOM05D004996 ORTHO05D005844 1.5e-93 347.1 313 55.0
Aqoxy5G01233 Aquilegia oxysepala HOM05D004996 ORTHO05D005844 2.2e-92 343.2 296 58.4
CANSAT11G1602 Cannabis sativa HOM05D004996 ORTHO05D005844 1.1e-91 340.9 287 59.2
CANSAT11G2671 Cannabis sativa HOM05D004996 ORTHO05D005844 1.1e-91 340.9 287 59.2
CsaV3_2G016730 Cucumis sativus L. HOM05D004996 ORTHO05D005844 1.1e-91 340.9 299 56.5
MELO3C020912.2 Cucumis melo HOM05D004996 ORTHO05D005844 1.4e-91 340.5 306 55.2
AUR62003879 Chenopodium quinoa HOM05D004996 ORTHO05D005844 1.8e-91 340.1 320 55.0
vmacro17952 Vaccinium macrocarpon HOM05D004996 ORTHO05D005844 1.8e-91 340.1 329 56.8
ClCG02G012610 Citrullus lanatus HOM05D004996 ORTHO05D005844 7.0e-91 338.2 286 56.3
Ah.02g120540 Amaranthus hybridus HOM05D004996 ORTHO05D005844 2.7e-90 336.3 285 57.9
THA.LOC104807582 Tarenaya hassleriana HOM05D004996 ORTHO05D005844 2.7e-90 336.3 324 54.6
EL10Ac6g15748 Beta vulgaris HOM05D004996 ORTHO05D005844 5.9e-90 335.1 305 56.4
PSO210G5017 Papaver somniferum HOM05D004996 ORTHO05D005844 5.9e-90 335.1 320 53.8
CARHR245500 Cardamine hirsuta HOM05D004996 ORTHO05D005844 2.9e-89 332.8 327 53.5
Thhalv10025731m.g Eutrema salsugineum HOM05D004996 ORTHO05D005844 4.2e-88 328.9 327 52.6
C01p02010 Brassica napus HOM05D004996 ORTHO05D005844 3.6e-87 325.9 324 53.7
AL7G13770 Arabidopsis lyrata HOM05D004996 ORTHO05D005844 6.1e-87 325.1 326 52.1
A01p01870 Brassica napus HOM05D004996 ORTHO05D005844 6.1e-87 325.1 306 55.2
Hund13551 Selenicereus undatus HOM05D004996 ORTHO05D005844 6.1e-87 325.1 299 55.9
BraA01t00176Z Brassica rapa HOM05D004996 ORTHO05D005844 1.0e-86 324.3 305 55.4
Aa31LG6G13970 Aethionema arabicum HOM05D004996 ORTHO05D005844 2.3e-86 323.2 309 54.4
Sp7g34760 Schrenkiella parvula HOM05D004996 ORTHO05D005844 3.0e-86 322.8 326 51.8
Thhalv10027846m.g Eutrema salsugineum HOM05D004996 ORTHO05D005844 2.0e-85 320.1 315 53.0
Carub.0007s0320 Capsella rubella HOM05D004996 ORTHO05D005844 2.6e-85 319.7 313 53.7
PSO170G3325 Papaver somniferum HOM05D004996 ORTHO05D005844 1.3e-84 317.4 320 51.2
QL06p041448 Quercus lobata HOM05D004996 ORTHO05D005844 1.3e-84 317.4 305 53.8
AT4G37000 Arabidopsis thaliana HOM05D004996 ORTHO05D005844 2.2e-84 316.6 325 52.3
Thhalv10027845m.g Eutrema salsugineum HOM05D004996 ORTHO05D005844 2.8e-84 316.2 308 52.9
Cfa004018 Carpinus fangiana HOM05D004996 ORTHO05D005844 8.3e-84 314.7 315 53.0
Haze_15405 Corylus avellana HOM05D004996 ORTHO05D005844 2.7e-82 309.7 317 51.7
SGA_v2.0_scaffold15G07296 Striga asiatica HOM05D004996 ORTHO05D005844 4.5e-82 308.9 266 57.9
Atru.chr3.335 Acer truncatum HOM05D004996 ORTHO05D005844 7.8e-82 308.1 280 56.4
CiPaw.01G018500 Carya illinoinensis HOM05D004996 ORTHO05D005844 1.0e-81 307.8 323 51.7
BolC1t00195H Brassica oleracea HOM05D004996 ORTHO05D005844 1.5e-80 303.9 360 48.1
Potri.007G043700 Populus trichocarpa HOM05D004996 ORTHO05D005844 3.3e-80 302.8 300 50.3
TWI53G0428 Tripterygium wilfordii HOM05D004996 ORTHO05D005844 3.6e-79 299.3 315 51.4
Dinv29984 Davidia involucrata HOM05D004996 ORTHO05D005844 1.8e-78 297.0 238 66.4
BcaNung02518 Brassica carinata HOM05D004996 ORTHO05D005844 6.8e-78 295.0 324 49.1
ClCG02G012600 Citrullus lanatus HOM05D004996 ORTHO05D005844 9.8e-77 291.2 271 49.8
CDE02G2298 Ceratophyllum demersum HOM05D004996 ORTHO05D005844 1.3e-76 290.8 307 48.9
CsaV3_2G016720 Cucumis sativus L. HOM05D004996 ORTHO05D005844 3.7e-76 289.3 283 49.5
Ciclev10026248m.g Citrus clementina HOM05D004996 ORTHO05D005844 4.9e-76 288.9 264 54.5
CDE02G3886 Ceratophyllum demersum HOM05D004996 ORTHO05D005844 1.4e-75 287.3 306 48.4
MELO3C020913.2 Cucumis melo HOM05D004996 ORTHO05D005844 5.4e-75 285.4 311 46.0
unitig_736.g22663 Utricularia gibba HOM05D004996 ORTHO05D005844 1.2e-74 284.3 296 48.6
Sed0020584 Sechium edule HOM05D004996 ORTHO05D005844 1.6e-74 283.9 286 48.6
TPR.G36604 Trifolium pratense HOM05D004996 ORTHO05D005844 2.0e-74 283.5 205 63.9
Hma1.2p1_0200F.1_g085860 Hydrangea macrophylla HOM05D004996 ORTHO05D005844 4.6e-74 282.3 202 69.3
Hma1.2p1_2839F.1_g329298 Hydrangea macrophylla HOM05D004996 ORTHO05D005844 4.6e-74 282.3 202 69.3
HPP92_028287 Vanilla planifolia HOM05D004996 ORTHO05D005844 5.6e-72 275.4 308 46.4
CSS0031276 Camellia sinensis var. sinensis HOM05D004996 ORTHO05D005844 4.7e-71 272.3 199 69.3
Sabra07G0038400 Salix brachista HOM05D004996 ORTHO05D005844 1.1e-70 271.2 292 49.7
Potri.007G043500 Populus trichocarpa HOM05D004996 ORTHO05D005844 1.5e-69 267.3 238 53.8
Ah.06g186350 Amaranthus hybridus HOM05D004996 ORTHO05D005844 3.2e-67 259.6 260 50.8
TWI09G1278 Tripterygium wilfordii HOM05D004996 ORTHO05D005844 2.7e-66 256.5 271 50.2
Os10g0389200 Oryza sativa ssp. japonica HOM05D004996 ORTHO05D005844 7.3e-64 248.4 328 42.7
ATR0009G017 Amborella trichopoda HOM05D004996 ORTHO05D005844 6.2e-63 245.4 262 49.6
Hund13537 Selenicereus undatus HOM05D004996 ORTHO05D005844 5.8e-61 238.8 290 45.5
Atru.chr3.332 Acer truncatum HOM05D004996 ORTHO05D005844 4.9e-60 235.7 207 60.4
Zm00001eb027950 Zea mays HOM05D004996 ORTHO05D005844 2.4e-59 233.4 321 40.8
Hund13538 Selenicereus undatus HOM05D004996 ORTHO05D005844 1.6e-55 220.7 297 42.8
AagrBONN_evm.TU.Sc2ySwM_368.2728 Anthoceros agrestis HOM05D004996 ORTHO05D005844 7.6e-53 211.8 306 40.2
HanXRQChr14g0442841 Helianthus annuus HOM05D004996 ORTHO05D005844 1.3e-52 211.1 179 57.5
AUR62001931 Chenopodium quinoa HOM05D004996 ORTHO05D005844 8.4e-52 208.4 175 58.3
Pp3c15_3570 Physcomitrium patens HOM05D004996 ORTHO05D005844 8.4e-52 208.4 271 40.6
SMO348G0076 Selaginella moellendorffii HOM05D004996 ORTHO05D005844 2.4e-51 206.8 260 40.4
Mapoly0002s0316 Marchantia polymorpha HOM05D004996 ORTHO05D005844 8.7e-49 198.4 259 43.6
AagrBONN_evm.TU.Sc2ySwM_340.386 Anthoceros agrestis HOM05D004996 ORTHO05D005844 2.1e-47 193.7 260 41.2
Mapoly0007s0155 Marchantia polymorpha HOM05D004996 ORTHO05D005844 2.1e-47 193.7 263 40.7
Os10g0389300 Oryza sativa ssp. japonica HOM05D004996 ORTHO05D005844 1.8e-33 147.5 206 39.3
Dinv39853 Davidia involucrata HOM05D004996 ORTHO05D005844 7.6e-29 132.1 99 67.7
HPP92_019276 Vanilla planifolia HOM05D004996 ORTHO05D005844 1.5e-24 117.9 120 43.3
Os10g0389100 Oryza sativa ssp. japonica HOM05D004996 ORTHO05D005844 1.6e-23 114.4 209 34.0
Hma1.2p1_0200F.1_g085850 Hydrangea macrophylla HOM05D004996 ORTHO05D005844 2.1e-23 114.0 108 63.0
Hma1.2p1_2839F.1_g329297 Hydrangea macrophylla HOM05D004996 ORTHO05D005844 2.1e-23 114.0 108 63.0
TPR.G22736 Trifolium pratense HOM05D004996 ORTHO05D005844 9.0e-22 108.6 102 50.0
Atru.chr3.333 Acer truncatum HOM05D004996 ORTHO05D005844 8.4e-20 102.1 89 52.8
Mapoly0002s0315 Marchantia polymorpha HOM05D004996 ORTHO05D005844 1.6e-18 97.8 129 41.1
TPR.G22585 Trifolium pratense HOM05D004996 ORTHO05D005844 2.7e-18 97.1 76 60.5
CBR_g39811 Chara braunii HOM05D004996 ORTHO05D005844 2.4e-14 84.0 263 26.2
CBR_g39812 Chara braunii HOM05D004996 ORTHO05D005844 5.3e-14 82.8 196 32.1
CBR_g39828 Chara braunii HOM05D001539 ORTHO05D008140 3.8e-12 76.6 296 25.7


User provided reference genes

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