Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.7G132600 Prunus persica HOM05D003434 ORTHO05D335778 4.5e-65 251.1 128 100.0
Prupe.6G064500 Prunus persica HOM05D003434 ORTHO05D334372 3.0e-21 105.5 56 96.4
Prupe.4G185500 Prunus persica HOM05D003434 ORTHO05D004465 1.1e-18 97.1 57 91.2
RcHm_v2.0_Chr5g0034581 Rosa chinensis HOM05D003434 ORTHO05D004465 2.2e-11 72.8 56 69.6
MD11G1241800 Malus domestica HOM05D003434 ORTHO05D004465 1.4e-10 70.1 59 69.5
FAN25G0934 Fragaria x ananassa HOM05D003434 ORTHO05D004465 2.0e-09 66.2 57 66.7
FAN21G0310 Fragaria x ananassa HOM05D003434 ORTHO05D004465 2.7e-09 65.9 57 66.7
FvH4_3g20570 Fragaria vesca HOM05D003434 ORTHO05D004465 4.5e-09 65.1 57 66.7
FAN11G3195 Fragaria x ananassa HOM05D003434 ORTHO05D004465 4.5e-09 65.1 57 66.7
FAN16G2559 Fragaria x ananassa HOM05D003434 ORTHO05D004465 7.7e-09 64.3 57 64.9
SalBow4G3038 Salvia bowleyana HOM05D003434 ORTHO05D004465 1.3e-08 63.5 56 58.9
SalBow6G7052 Salvia bowleyana HOM05D003434 ORTHO05D004465 2.9e-08 62.4 56 58.9
C01p49000 Brassica napus HOM05D003434 ORTHO05D004465 3.8e-08 62.0 57 59.6
BolC1t04864H Brassica oleracea HOM05D003434 ORTHO05D004465 3.8e-08 62.0 57 59.6
Oeu011677.2 Olea europaea HOM05D003434 ORTHO05D004465 5.0e-08 61.6 56 60.7
C05p51700 Brassica napus HOM05D003434 ORTHO05D004465 8.5e-08 60.8 62 58.1
BolC5t33857H Brassica oleracea HOM05D003434 ORTHO05D004465 8.5e-08 60.8 62 58.1
Lalb_Chr04g0258261 Lupinus albus HOM05D003434 ORTHO05D004465 8.5e-08 60.8 56 55.4
A01p38760 Brassica napus HOM05D003434 ORTHO05D004465 1.1e-07 60.5 57 56.1
Sc21g0001090 Simmondsia chinensis HOM05D003434 ORTHO05D004465 1.1e-07 60.5 56 55.4
BcaB06g29576 Brassica carinata HOM05D003434 ORTHO05D004465 1.5e-07 60.1 60 58.3
CANSAT78G2387 Cannabis sativa HOM05D003434 ORTHO05D004465 1.5e-07 60.1 56 55.4
Carub.0003s1518 Capsella rubella HOM05D003434 ORTHO05D004465 1.5e-07 60.1 57 59.6
Sp3g13710 Schrenkiella parvula HOM05D003434 ORTHO05D004465 1.5e-07 60.1 59 57.6
Rhsim06G0196400 Rhododendron simsii HOM05D003434 ORTHO05D004465 1.9e-07 59.7 55 60.0
BcaB04g20924 Brassica carinata HOM05D003434 ORTHO05D004465 2.5e-07 59.3 57 57.9
ECA236G4345 Erigeron canadensis HOM05D003434 ORTHO05D004465 2.5e-07 59.3 56 64.3
Lj8A158G80 Lonicera japonica HOM05D003434 ORTHO05D004465 3.2e-07 58.9 57 59.6
MD03G1224000 Malus domestica HOM05D003434 ORTHO05D004465 3.2e-07 58.9 57 63.2
BcaC01g03873 Brassica carinata HOM05D003434 ORTHO05D004465 4.2e-07 58.5 56 57.1
BcaC09g48510 Brassica carinata HOM05D003434 ORTHO05D004465 4.2e-07 58.5 59 55.9
C03p47690 Brassica napus HOM05D003434 ORTHO05D004465 4.2e-07 58.5 56 57.1
Haze_07077 Corylus avellana HOM05D003434 ORTHO05D004465 4.2e-07 58.5 56 55.4
Cfa020548 Carpinus fangiana HOM05D003434 ORTHO05D004465 5.5e-07 58.2 56 53.6
Hund24214 Selenicereus undatus HOM05D003434 ORTHO05D004465 5.5e-07 58.2 57 59.6
Hund31009 Selenicereus undatus HOM05D003434 ORTHO05D023136 5.5e-07 58.2 57 59.6
CARHR043150 Cardamine hirsuta HOM05D003434 ORTHO05D004465 7.2e-07 57.8 59 57.6
Haze_09473 Corylus avellana HOM05D003434 ORTHO05D004465 9.4e-07 57.4 56 53.6
Haze_09477 Corylus avellana HOM05D003434 ORTHO05D004465 9.4e-07 57.4 56 53.6
Gorai.007G319600 Gossypium raimondii HOM05D003434 ORTHO05D004465 9.4e-07 57.4 60 56.7
Nitab4.5_0000677g0140 Nicotiana tabacum HOM05D003434 ORTHO05D004465 9.4e-07 57.4 56 53.6
CSS0016315 Camellia sinensis var. sinensis HOM05D003434 ORTHO05D004465 1.2e-06 57.0 56 58.9
CARHR090510 Cardamine hirsuta HOM05D003434 ORTHO05D004465 1.6e-06 56.6 57 54.4
A03p39310 Brassica napus HOM05D003434 ORTHO05D004465 2.1e-06 56.2 56 55.4
A05p33960 Brassica napus HOM05D003434 ORTHO05D004465 2.1e-06 56.2 62 58.1
BraA03t13081Z Brassica rapa HOM05D003434 ORTHO05D004465 2.1e-06 56.2 56 55.4
BraA05t22218Z Brassica rapa HOM05D003434 ORTHO05D004465 2.1e-06 56.2 62 58.1
Cc05_g12350 Coffea canephora HOM05D003434 ORTHO05D004465 2.1e-06 56.2 72 48.6
COL.COLO4_09433 Corchorus olitorius HOM05D003434 ORTHO05D004465 2.1e-06 56.2 61 57.4
Thhalv10011666m.g Eutrema salsugineum HOM05D003434 ORTHO05D004465 2.1e-06 56.2 58 56.9
Gohir.A11G282773 Gossypium hirsutum HOM05D003434 ORTHO05D004465 2.1e-06 56.2 60 55.0
Gohir.D11G296500 Gossypium hirsutum HOM05D003434 ORTHO05D004465 2.1e-06 56.2 60 56.7
THA.LOC104818062 Tarenaya hassleriana HOM05D003434 ORTHO05D004465 2.1e-06 56.2 57 54.4
AL3G28010 Arabidopsis lyrata HOM05D003434 ORTHO05D004465 2.7e-06 55.8 56 53.6
Duzib170G0474 Durio zibethinus HOM05D003434 ORTHO05D004465 2.7e-06 55.8 60 56.7
THA.LOC104815549 Tarenaya hassleriana HOM05D003434 ORTHO05D004465 2.7e-06 55.8 57 56.1
BolC3t17044H Brassica oleracea HOM05D003434 ORTHO05D004465 3.6e-06 55.5 56 55.4
Gohir.A04G028400 Gossypium hirsutum HOM05D003434 ORTHO05D004465 3.6e-06 55.5 59 54.2
Sp1g39500 Schrenkiella parvula HOM05D003434 ORTHO05D004465 3.6e-06 55.5 59 54.2
vmacro19412 Vaccinium macrocarpon HOM05D003434 ORTHO05D004465 3.6e-06 55.5 55 58.2
Carub.0001s4208 Capsella rubella HOM05D003434 ORTHO05D004465 4.7e-06 55.1 59 54.2
GSVIVG01028448001 Vitis vinifera HOM05D003434 ORTHO05D004465 4.7e-06 55.1 57 54.4
SGA_v2.0_scaffold9G04937 Striga asiatica HOM05D003434 ORTHO05D004465 6.1e-06 54.7 56 55.4
BcaB06g29579 Brassica carinata HOM05D003434 ORTHO05D004465 8.0e-06 54.3 59 57.6
Oeu019344.1 Olea europaea HOM05D003434 ORTHO05D004465 8.0e-06 54.3 56 57.1
Hund24220 Selenicereus undatus HOM05D003434 ORTHO05D004465 8.0e-06 54.3 57 57.9
Hund24225 Selenicereus undatus HOM05D003434 ORTHO05D023136 8.0e-06 54.3 57 57.9


User provided reference genes

Program Settings