Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.7G125700 Prunus persica HOM05D005036 ORTHO05D005881 1.5e-75 286.6 206 100.0
MD12G1106800 Malus domestica HOM05D005036 ORTHO05D005881 4.4e-62 241.9 207 88.9
RcHm_v2.0_Chr3g0470841 Rosa chinensis HOM05D005036 ORTHO05D005881 6.5e-58 228.0 206 86.9
FvH4_6g16830 Fragaria vesca HOM05D005036 ORTHO05D005881 2.1e-56 223.0 206 85.9
FAN05G3428 Fragaria x ananassa HOM05D005036 ORTHO05D005881 7.9e-56 221.1 206 85.4
FAN14G1811 Fragaria x ananassa HOM05D000001 ORTHO05D000003 1.0e-55 220.7 204 85.8
FAN09G0503 Fragaria x ananassa HOM05D005036 ORTHO05D000003 3.9e-55 218.8 204 85.3
FAN05G0966 Fragaria x ananassa HOM05D005036 ORTHO05D005881 5.2e-55 218.4 206 85.0
FAN02G0694 Fragaria x ananassa HOM05D000001 ORTHO05D000003 7.4e-54 214.5 204 84.3
Haze_20497 Corylus avellana HOM05D005036 ORTHO05D005881 4.0e-47 192.2 204 71.6
Sed0017772 Sechium edule HOM05D005036 ORTHO05D005881 1.2e-46 190.7 200 75.0
CiPaw.10G127400 Carya illinoinensis HOM05D005036 ORTHO05D005881 1.5e-46 190.3 200 78.0
Cfa017655 Carpinus fangiana HOM05D005036 ORTHO05D005881 2.0e-46 189.9 205 71.7
ClCG10G019890 Citrullus lanatus HOM05D005036 ORTHO05D005881 2.0e-46 189.9 209 74.2
MELO3C009379.2 Cucumis melo HOM05D005036 ORTHO05D005881 2.6e-46 189.5 202 70.8
CsaV3_3G036210 Cucumis sativus L. HOM05D005036 ORTHO05D005881 5.7e-46 188.3 210 68.6
Thecc.05G071400 Theobroma cacao HOM05D005036 ORTHO05D005881 5.7e-46 188.3 208 75.5
CANSAT80G0983 Cannabis sativa HOM05D005036 ORTHO05D005881 7.5e-46 188.0 204 77.9
Glyma.10G059800 Glycine max HOM05D005036 ORTHO05D005881 4.8e-45 185.3 207 74.4
Glyma.13G146500 Glycine max HOM05D005036 ORTHO05D005881 4.8e-45 185.3 207 74.4
Ciclev10012800m.g Citrus clementina HOM05D005036 ORTHO05D005881 1.2e-43 180.6 208 76.4
PGR004G0584 Punica granatum HOM05D005036 ORTHO05D005881 1.6e-43 180.3 207 74.4
Lalb_Chr02g0155461 Lupinus albus HOM05D005036 ORTHO05D005881 2.0e-43 179.9 204 74.0
Nn2g13858 Nelumbo nucifera HOM05D005036 ORTHO05D005881 2.0e-43 179.9 204 72.5
Phvul.007G151800 Phaseolus vulgaris HOM05D005036 ORTHO05D005881 2.0e-43 179.9 205 72.7
QL07p042294 Quercus lobata HOM05D005036 ORTHO05D005881 2.0e-43 179.9 232 68.1
Ca_08897_v3 Cicer arietinum L. HOM05D005036 ORTHO05D005881 3.5e-43 179.1 205 74.1
VMungo0720G2361 Vigna mungo HOM05D005036 ORTHO05D005881 5.9e-43 178.3 205 72.2
Lj5g0011319 Lotus japonicus HOM05D005036 ORTHO05D005881 1.3e-42 177.2 202 71.8
Actinidia31315 Actinidia chinensis HOM05D005036 ORTHO05D005881 1.7e-42 176.8 208 74.0
Actinidia32478 Actinidia chinensis HOM05D005036 ORTHO05D005881 3.8e-42 175.6 208 72.1
Atru.chr8.1751 Acer truncatum HOM05D005036 ORTHO05D005881 5.0e-42 175.3 203 74.4
EL10Ac7g16693 Beta vulgaris HOM05D005036 ORTHO05D005881 8.5e-42 174.5 207 73.9
Gohir.A01G214100 Gossypium hirsutum HOM05D005036 ORTHO05D005881 8.5e-42 174.5 207 72.0
Gohir.D01G201000 Gossypium hirsutum HOM05D005036 ORTHO05D005881 1.1e-41 174.1 202 72.8
arahy.Tifrunner.gnm1.ann1.HJT5F9 Arachis hypogaea HOM05D005036 ORTHO05D005881 3.2e-41 172.6 197 73.6
arahy.Tifrunner.gnm1.ann1.LB0AEW Arachis hypogaea HOM05D005036 ORTHO05D005881 3.2e-41 172.6 197 73.6
Aqoxy1G01100 Aquilegia oxysepala HOM05D005036 ORTHO05D005881 9.4e-41 171.0 206 64.6
Psat6g076000 Pisum sativum HOM05D005036 ORTHO05D005881 1.6e-40 170.2 203 70.4
Manes.08G013000 Manihot esculenta HOM05D005036 ORTHO05D005881 2.7e-40 169.5 201 75.6
Cpa.g.sc92.91 Carica papaya HOM05D005036 ORTHO05D005881 3.6e-40 169.1 202 70.8
Duzib093G0365 Durio zibethinus HOM05D005036 ORTHO05D005881 6.1e-40 168.3 208 70.7
Medtr1g062770 Medicago truncatula HOM05D005036 ORTHO05D005881 1.0e-39 167.5 201 71.1
Manes.09G062100 Manihot esculenta HOM05D005036 ORTHO05D005881 4.0e-39 165.6 197 73.6
Potri.016G097900 Populus trichocarpa HOM05D005036 ORTHO05D005881 5.2e-39 165.2 193 74.6
GSVIVG01033679001 Vitis vinifera HOM05D005036 ORTHO05D005881 5.2e-39 165.2 199 72.4
COL.COLO4_26911 Corchorus olitorius HOM05D005036 ORTHO05D005881 8.8e-39 164.5 226 67.3
Duzib128G0734 Durio zibethinus HOM05D005036 ORTHO05D005881 2.0e-38 163.3 209 71.8
TWI53G1582 Tripterygium wilfordii HOM05D005036 ORTHO05D005881 4.4e-38 162.2 207 71.0
TPR.G20997 Trifolium pratense HOM05D005036 ORTHO05D005881 7.5e-38 161.4 203 70.9
Gorai.002G245700 Gossypium raimondii HOM05D005036 ORTHO05D005881 1.7e-37 160.2 181 75.7
Potri.006G121500 Populus trichocarpa HOM05D005036 ORTHO05D005881 2.2e-37 159.8 196 74.5
Sabra06G0095700 Salix brachista HOM05D005036 ORTHO05D005881 2.4e-36 156.4 194 74.7
RhsimUnG0004000 Rhododendron simsii HOM05D005036 ORTHO05D005881 7.0e-36 154.8 210 64.8
RhsimUnG0067400 Rhododendron simsii HOM05D005036 ORTHO05D005881 7.0e-36 154.8 210 64.8
Oeu016995.1 Olea europaea HOM05D005036 ORTHO05D005881 9.1e-36 154.5 205 69.8
Sc02g0001470 Simmondsia chinensis HOM05D005036 ORTHO05D005881 9.1e-36 154.5 205 58.5
TAR623G1598 Trochodendron aralioides HOM05D005036 ORTHO05D005881 1.2e-35 154.1 202 68.8
AUR62041564 Chenopodium quinoa HOM05D005036 ORTHO05D005881 2.0e-35 153.3 206 68.4
Eucgr.A01621 Eucalyptus grandis HOM05D005036 ORTHO05D005881 2.0e-35 153.3 183 76.0
CSS0031942 Camellia sinensis var. sinensis HOM05D005036 ORTHO05D005881 3.5e-35 152.5 206 71.4
CSS0042807 Camellia sinensis var. sinensis HOM05D005036 ORTHO05D005881 3.5e-35 152.5 206 71.4
AUR62026956 Chenopodium quinoa HOM05D005036 ORTHO05D005881 4.5e-35 152.1 206 68.0
HanXRQChr13g0400721 Helianthus annuus HOM05D005036 ORTHO05D005881 4.5e-35 152.1 205 69.8
Migut.J00453 Erythranthe guttata HOM05D005036 ORTHO05D005881 7.7e-35 151.4 205 70.2
HPP92_008393 Vanilla planifolia HOM05D005036 ORTHO05D005881 1.0e-34 151.0 200 56.0
Lsat_1_v5_gn_6_28400 Lactuca sativa HOM05D005036 ORTHO05D005881 1.3e-34 150.6 200 69.5
ECA233G6008 Erigeron canadensis HOM05D005036 ORTHO05D005881 2.3e-34 149.8 205 69.3
Hund20124 Selenicereus undatus HOM05D005036 ORTHO05D005881 3.8e-34 149.1 217 65.4
Peaxi162Scf00110g00120 Petunia axillaris HOM05D005036 ORTHO05D005881 2.5e-33 146.4 202 69.3
SGA_v2.0_scaffold224G42932 Striga asiatica HOM05D005036 ORTHO05D005881 2.5e-33 146.4 193 63.7
Hma1.2p1_0547F.1_g176530 Hydrangea macrophylla HOM05D005036 ORTHO05D005881 5.5e-33 145.2 208 68.3
Nitab4.5_0003314g0090 Nicotiana tabacum HOM05D005036 ORTHO05D005881 9.5e-33 144.4 205 66.8
Nitab4.5_0000132g0510 Nicotiana tabacum HOM05D005036 ORTHO05D005881 1.2e-32 144.1 199 66.8
PSO339G6683 Papaver somniferum HOM05D005036 ORTHO05D005881 1.2e-32 144.1 206 65.0
THA.LOC104823230 Tarenaya hassleriana HOM05D005036 ORTHO05D005881 2.1e-32 143.3 200 68.5
Oeu056532.1 Olea europaea HOM05D005036 ORTHO05D005881 2.8e-32 142.9 196 70.4
Sopen10g033320 Solanum pennellii HOM05D005036 ORTHO05D005881 6.1e-32 141.7 207 69.1
CAN.G488.30 Capsicum annuum HOM05D005036 ORTHO05D005881 8.0e-32 141.4 201 69.2
CARHR084400 Cardamine hirsuta HOM05D005036 ORTHO05D005881 1.0e-31 141.0 199 60.8
Cc06_g04530 Coffea canephora HOM05D005036 ORTHO05D005881 3.0e-31 139.4 206 65.5
Nitab4.5_0002373g0080 Nicotiana tabacum HOM05D005036 ORTHO05D005881 3.0e-31 139.4 205 65.9
Sopen09g003280 Solanum pennellii HOM05D005036 ORTHO05D005881 3.0e-31 139.4 203 67.0
PGSC0003DMG400028280 Solanum tuberosum HOM05D005036 ORTHO05D005881 3.0e-31 139.4 207 68.6
Solyc09g008450.3 Solanum lycopersicum HOM05D005036 ORTHO05D005881 6.8e-31 138.3 203 64.5
unitig_578.g16379 Utricularia gibba HOM05D000468 ORTHO05D005881 6.8e-31 138.3 208 63.9
MSTRG.10334 Avicennia marina HOM05D005036 ORTHO05D005881 1.5e-30 137.1 210 54.3
SGA_v2.0_scaffold40G15474 Striga asiatica HOM05D005036 ORTHO05D005881 1.5e-30 137.1 206 65.0
DCAR_017666 Daucus carota HOM05D005036 ORTHO05D005881 2.6e-30 136.3 201 66.2
Peaxi162Scf01128g00018 Petunia axillaris HOM05D005036 ORTHO05D005881 2.6e-30 136.3 198 51.5
Thhalv10021529m.g Eutrema salsugineum HOM05D005036 ORTHO05D005881 4.4e-30 135.6 203 59.1
CDE06G0353 Ceratophyllum demersum HOM05D005036 ORTHO05D005881 7.5e-30 134.8 200 65.0
PGSC0003DMG400003873 Solanum tuberosum HOM05D005036 ORTHO05D005881 7.5e-30 134.8 203 66.5
vmacro08795 Vaccinium macrocarpon HOM05D005036 ORTHO05D005881 9.8e-30 134.4 257 46.7
AL3G21130 Arabidopsis lyrata HOM05D005036 ORTHO05D005881 1.3e-29 134.0 201 59.2
Migut.L01721 Erythranthe guttata HOM05D005036 ORTHO05D005881 2.8e-29 132.9 210 62.9
Dinv37336 Davidia involucrata HOM05D005036 ORTHO05D005881 5.4e-28 128.6 140 70.0
AT3G09890 Arabidopsis thaliana HOM05D005036 ORTHO05D005881 7.0e-28 128.3 200 57.5
C03p43440 Brassica napus HOM05D005036 ORTHO05D005881 2.0e-27 126.7 201 41.8
BolC3t16615H Brassica oleracea HOM05D005036 ORTHO05D005881 1.0e-26 124.4 201 41.3
PSO063G2941 Papaver somniferum HOM05D005036 ORTHO05D005881 3.8e-26 122.5 182 67.0
Sp3g08240 Schrenkiella parvula HOM05D005036 ORTHO05D005881 3.8e-26 122.5 202 49.0
A03p35790 Brassica napus HOM05D005036 ORTHO05D005881 6.6e-26 121.7 201 40.3
BraA03t12751Z Brassica rapa HOM05D005036 ORTHO05D005881 6.6e-26 121.7 201 40.3
ATR0329G020 Amborella trichopoda HOM05D005036 ORTHO05D005881 1.1e-25 120.9 203 63.1
Carub.0003s0899 Capsella rubella HOM05D005036 ORTHO05D005881 1.1e-25 120.9 200 57.0
BcaC01g04251 Brassica carinata HOM05D005036 ORTHO05D005881 1.9e-25 120.2 200 58.0
Aa31LG3G2370 Aethionema arabicum HOM05D005036 ORTHO05D005881 4.3e-25 119.0 181 51.4
BcaB03g11582 Brassica carinata HOM05D005036 ORTHO05D005881 4.3e-25 119.0 200 56.0
MBI13_g13833_MAGBIO Magnolia biondii HOM05D005036 ORTHO05D005881 1.6e-24 117.1 206 50.0
BcaC01g04252 Brassica carinata HOM05D005036 ORTHO05D005881 2.8e-24 116.3 192 40.6
Nitab4.5_0003268g0010 Nicotiana tabacum HOM05D005036 ORTHO05D005881 8.9e-23 111.3 201 50.2
SEGI_13906 Sequoiadendron giganteum HOM05D005036 ORTHO05D005881 2.6e-22 109.8 198 63.1
Lj3A990G72 Lonicera japonica HOM05D005036 ORTHO05D005881 7.5e-22 108.2 149 77.9
DCAR_015009 Daucus carota HOM05D005036 ORTHO05D005881 1.4e-20 104.0 208 46.2
Sc02g0001400 Simmondsia chinensis HOM05D005036 ORTHO05D005881 7.0e-20 101.7 209 47.8
BcaC05g29716 Brassica carinata HOM05D005036 ORTHO05D005881 3.5e-19 99.4 200 36.5
DCAR_032184 Daucus carota HOM05D005036 ORTHO05D005881 3.9e-18 95.9 194 46.4
MBI18_g12436_MAGBIO Magnolia biondii HOM05D005036 ORTHO05D005881 1.5e-17 94.0 154 67.5
BcaC05g29502 Brassica carinata HOM05D005036 ORTHO05D005881 1.9e-17 93.6 201 51.7
BcaC05g29503 Brassica carinata HOM05D005036 ORTHO05D005881 1.9e-17 93.6 201 51.7
C05p58170 Brassica napus HOM05D005036 ORTHO05D005881 1.9e-17 93.6 201 51.7
BolC5t34473H Brassica oleracea HOM05D005036 ORTHO05D005881 1.9e-17 93.6 201 51.7
MBI01_g04638_MAGBIO Magnolia biondii HOM05D005036 ORTHO05D005881 1.9e-17 93.6 149 69.1
A05p39150 Brassica napus HOM05D005036 ORTHO05D005881 3.3e-17 92.8 200 55.0
BraA05t22704Z Brassica rapa HOM05D005036 ORTHO05D005881 3.3e-17 92.8 200 55.0
Zm00001eb003690 Zea mays HOM05D005036 ORTHO05D005881 1.2e-16 90.9 198 55.6
Pp3c10_11210 Physcomitrium patens HOM05D005036 ORTHO05D005881 2.1e-16 90.1 191 54.5
MBI15_g24508_MAGBIO Magnolia biondii HOM05D005036 ORTHO05D005881 3.1e-15 86.3 145 46.9
BcaC05g29712 Brassica carinata HOM05D005036 ORTHO05D005881 6.8e-15 85.1 200 36.5
BcaC05g29714 Brassica carinata HOM05D005036 ORTHO05D005881 6.8e-15 85.1 200 36.5
BcaC05g29715 Brassica carinata HOM05D005036 ORTHO05D005881 6.8e-15 85.1 200 36.5
BcaC05g29713 Brassica carinata HOM05D005036 ORTHO05D005881 1.2e-14 84.3 200 37.0
MD04G1089000 Malus domestica HOM05D005036 ORTHO05D005881 5.8e-14 82.0 117 65.8
MBI16_g11024_MAGBIO Magnolia biondii HOM05D005036 ORTHO05D005881 1.7e-13 80.5 149 51.0
THA.LOC104816666 Tarenaya hassleriana HOM05D005036 ORTHO05D005881 2.9e-13 79.7 104 50.0
Os03g0145800 Oryza sativa ssp. japonica HOM05D005036 ORTHO05D005881 8.3e-13 78.2 134 48.5
Carub.0003s0923 Capsella rubella HOM05D005036 ORTHO05D005881 7.0e-12 75.1 136 63.2
Psat6g104720 Pisum sativum HOM05D001839 ORTHO05D001867 1.2e-11 74.3 168 34.5
Psat4g020880 Pisum sativum HOM05D005036 ORTHO05D005881 6.0e-11 72.0 76 76.3
Ah.14g078370 Amaranthus hybridus HOM05D005036 ORTHO05D005881 7.8e-11 71.6 80 52.5
Lj3C990T8 Lonicera japonica HOM05D005036 ORTHO05D005881 1.5e-09 67.4 58 67.2
CBR_g9117 Chara braunii HOM05D005036 ORTHO05D005881 5.6e-09 65.5 88 45.5
AagrBONN_evm.TU.Sc2ySwM_368.2717 Anthoceros agrestis HOM05D005036 ORTHO05D005881 2.1e-08 63.5 100 42.0
Cre06.g283300 Chlamydomonas reinhardtii HOM05D005036 ORTHO05D005881 5.8e-06 55.5 78 42.3
Solyc10g083870.2 Solanum lycopersicum HOM05D005036 ORTHO05D005881 9.9e-06 54.7 122 55.7


User provided reference genes

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