Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.7G112900 Prunus persica HOM05D005679 ORTHO05D007228 5.6e-127 457.6 227 100.0
MD12G1023600 Malus domestica HOM05D005679 ORTHO05D007228 5.4e-106 387.9 224 82.1
MD14G1020800 Malus domestica HOM05D005679 ORTHO05D007228 1.7e-104 382.9 224 80.8
RcHm_v2.0_Chr3g0472981 Rosa chinensis HOM05D005679 ORTHO05D007228 8.1e-94 347.4 224 75.4
FAN05G0675 Fragaria x ananassa HOM05D005679 ORTHO05D007228 1.3e-91 340.1 224 74.1
FAN14G3109 Fragaria x ananassa HOM05D005679 ORTHO05D007228 6.4e-91 337.8 224 75.0
FvH4_6g18450 Fragaria vesca HOM05D005679 ORTHO05D007228 7.1e-90 334.3 224 74.1
CANSAT80G1368 Cannabis sativa HOM05D005679 ORTHO05D007228 4.3e-87 325.1 223 69.5
arahy.Tifrunner.gnm1.ann1.5KE53F Arachis hypogaea HOM05D005679 ORTHO05D007228 1.6e-86 323.2 221 68.3
arahy.Tifrunner.gnm1.ann1.J82H2E Arachis hypogaea HOM05D005679 ORTHO05D007228 2.1e-86 322.8 221 67.4
GSVIVG01033827001 Vitis vinifera HOM05D005679 ORTHO05D007228 8.1e-86 320.9 221 67.9
MELO3C009462.2 Cucumis melo HOM05D005679 ORTHO05D007228 1.4e-85 320.1 221 69.2
CsaV3_3G037160 Cucumis sativus L. HOM05D005679 ORTHO05D007228 1.4e-85 320.1 224 68.3
FAN02G2684 Fragaria x ananassa HOM05D005679 ORTHO05D007228 4.0e-85 318.5 233 70.0
Lalb_Chr21g0315771 Lupinus albus HOM05D005679 ORTHO05D007228 3.4e-84 315.5 221 66.5
ClCG10G019090 Citrullus lanatus HOM05D005679 ORTHO05D007228 7.6e-84 314.3 224 68.8
TPR.G31118 Trifolium pratense HOM05D005679 ORTHO05D007228 2.2e-83 312.8 223 64.1
CiPaw.09G012600 Carya illinoinensis HOM05D005679 ORTHO05D007228 6.4e-83 311.2 221 67.0
Atru.chr8.1566 Acer truncatum HOM05D005679 ORTHO05D007228 1.1e-82 310.5 224 64.7
Psat6g080840 Pisum sativum HOM05D005679 ORTHO05D007228 1.1e-82 310.5 221 65.6
Ciclev10012247m.g Citrus clementina HOM05D005679 ORTHO05D007228 2.4e-82 309.3 224 66.1
COL.COLO4_29768 Corchorus olitorius HOM05D005679 ORTHO05D007228 3.2e-82 308.9 221 63.8
Medtr1g060300 Medicago truncatula HOM05D005679 ORTHO05D007228 3.2e-82 308.9 221 65.6
Potri.006G083300 Populus trichocarpa HOM05D005679 ORTHO05D007228 3.2e-82 308.9 223 66.4
Hma1.2p1_0536F.1_g174040 Hydrangea macrophylla HOM05D005679 ORTHO05D007228 9.3e-82 307.4 225 66.2
Lj5g0006681 Lotus japonicus HOM05D005679 ORTHO05D007228 9.3e-82 307.4 221 66.1
VMungo0720G0655 Vigna mungo HOM05D005679 ORTHO05D007228 1.2e-81 307.0 221 66.5
Gohir.D04G100800 Gossypium hirsutum HOM05D005679 ORTHO05D007228 7.9e-81 304.3 223 64.1
Gorai.009G404000 Gossypium raimondii HOM05D005679 ORTHO05D007228 3.0e-80 302.4 223 64.1
Thecc.05G087100 Theobroma cacao HOM05D005679 ORTHO05D007228 5.1e-80 301.6 221 64.3
CSS0002811 Camellia sinensis var. sinensis HOM05D005679 ORTHO05D007228 1.5e-79 300.1 224 63.4
Phvul.007G229100 Phaseolus vulgaris HOM05D005679 ORTHO05D007228 1.5e-79 300.1 221 64.3
Gohir.A04G063700 Gossypium hirsutum HOM05D005679 ORTHO05D007228 3.3e-79 298.9 223 62.8
Duzib093G1300 Durio zibethinus HOM05D005679 ORTHO05D007228 4.3e-79 298.5 224 65.2
Peaxi162Scf00040g01117 Petunia axillaris HOM05D005679 ORTHO05D007228 7.4e-79 297.7 221 62.9
Glyma.13G153052 Glycine max HOM05D005679 ORTHO05D007228 9.6e-79 297.4 221 64.3
Eucgr.A01508 Eucalyptus grandis HOM05D005679 ORTHO05D007228 1.6e-78 296.6 221 65.2
CAN.G397.28 Capsicum annuum HOM05D005679 ORTHO05D007228 2.8e-78 295.8 224 62.5
Sabra06G0062900 Salix brachista HOM05D005679 ORTHO05D007228 8.1e-78 294.3 219 63.9
Actinidia05440 Actinidia chinensis HOM05D005679 ORTHO05D007228 1.1e-77 293.9 224 64.7
TAR633G0672 Trochodendron aralioides HOM05D005679 ORTHO05D007228 1.1e-77 293.9 221 63.3
Dinv21221 Davidia involucrata HOM05D005679 ORTHO05D007228 1.4e-77 293.5 224 63.4
Solyc09g009630.3 Solanum lycopersicum HOM05D005679 ORTHO05D007228 1.8e-77 293.1 221 61.1
Rhsim03G0076400 Rhododendron simsii HOM05D005679 ORTHO05D007228 3.1e-77 292.4 219 63.9
Sopen09g004390 Solanum pennellii HOM05D005679 ORTHO05D007228 9.0e-77 290.8 221 61.1
Oeu047193.1 Olea europaea HOM05D005679 ORTHO05D007228 1.5e-76 290.0 222 61.7
PGSC0003DMG401002654 Solanum tuberosum HOM05D005679 ORTHO05D007228 2.6e-76 289.3 221 61.1
vmacro07401 Vaccinium macrocarpon HOM05D005679 ORTHO05D007228 2.6e-76 289.3 244 58.2
Migut.J01051 Erythranthe guttata HOM05D005679 ORTHO05D007228 3.4e-76 288.9 221 61.5
Manes.09G056451 Manihot esculenta HOM05D005679 ORTHO05D007228 7.6e-76 287.7 224 64.3
MSTRG.5837 Avicennia marina HOM05D005679 ORTHO05D007228 2.1e-73 279.6 221 60.6
PGR004G0569 Punica granatum HOM05D005679 ORTHO05D007228 2.1e-73 279.6 224 61.6
BolC3t14741H Brassica oleracea HOM05D005679 ORTHO05D007228 2.7e-73 279.3 222 62.2
A03p20010 Brassica napus HOM05D005679 ORTHO05D007228 4.6e-73 278.5 225 61.8
BraA03t11252Z Brassica rapa HOM05D005679 ORTHO05D007228 4.6e-73 278.5 225 61.8
BcaC01g05669 Brassica carinata HOM05D005679 ORTHO05D007228 6.0e-73 278.1 222 62.2
THA.LOC104807091 Tarenaya hassleriana HOM05D005679 ORTHO05D007228 6.0e-73 278.1 221 60.2
Carub.0004s1806 Capsella rubella HOM05D005679 ORTHO05D007228 7.9e-73 277.7 224 60.7
Aa31LG5G21440 Aethionema arabicum HOM05D005679 ORTHO05D007228 5.1e-72 275.0 224 59.8
AT2G36305 Arabidopsis thaliana HOM05D005679 ORTHO05D007228 6.7e-72 274.6 224 58.5
C03p23450 Brassica napus HOM05D005679 ORTHO05D007228 6.7e-72 274.6 222 61.7
Sp4g18530 Schrenkiella parvula HOM05D005679 ORTHO05D007228 6.7e-72 274.6 224 61.2
AL4G32420 Arabidopsis lyrata HOM05D005679 ORTHO05D007228 8.7e-72 274.2 224 59.4
Cc06_g05640 Coffea canephora HOM05D005679 ORTHO05D007228 1.9e-71 273.1 221 57.0
BcaB01g03852 Brassica carinata HOM05D005679 ORTHO05D007228 4.3e-71 271.9 226 60.2
Sc02g0000910 Simmondsia chinensis HOM05D005679 ORTHO05D007228 1.3e-70 270.4 214 60.7
Thhalv10016950m.g Eutrema salsugineum HOM05D005679 ORTHO05D007228 2.1e-70 269.6 221 60.2
HanXRQChr10g0313981 Helianthus annuus HOM05D005679 ORTHO05D007228 2.8e-70 269.2 223 57.8
PSO339G3946 Papaver somniferum HOM05D005679 ORTHO05D007228 2.8e-70 269.2 221 59.7
FAN05G4213 Fragaria x ananassa HOM05D005679 ORTHO05D007228 3.7e-70 268.9 181 74.6
SGA_v2.0_scaffold13G06736 Striga asiatica HOM05D005679 ORTHO05D007228 1.4e-69 266.9 224 57.1
Glyma.10G071200 Glycine max HOM05D005679 ORTHO05D007228 1.8e-69 266.5 183 66.7
Nn6g34939 Nelumbo nucifera HOM05D005679 ORTHO05D007228 1.8e-69 266.5 240 56.2
Aqoxy4G02804 Aquilegia oxysepala HOM05D005679 ORTHO05D007228 6.9e-69 264.6 221 57.0
HanXRQChr13g0424691 Helianthus annuus HOM05D005679 ORTHO05D007228 1.5e-68 263.5 220 57.3
HanXRQChr10g0313901 Helianthus annuus HOM05D005679 ORTHO05D007228 2.0e-68 263.1 220 57.7
Lsat_1_v5_gn_1_48041 Lactuca sativa HOM05D005679 ORTHO05D007228 5.8e-68 261.5 220 57.7
EL10Ac7g16934 Beta vulgaris HOM05D005679 ORTHO05D007228 7.6e-68 261.2 222 57.2
PSO384G2019 Papaver somniferum HOM05D005679 ORTHO05D007228 2.5e-66 256.1 221 57.5
Ah.08g210640 Amaranthus hybridus HOM05D005679 ORTHO05D007228 1.2e-65 253.8 224 56.2
TWI77G0106 Tripterygium wilfordii HOM05D005679 ORTHO05D007228 1.0e-64 250.8 195 63.6
Nitab4.5_0001725g0030 Nicotiana tabacum HOM05D005679 ORTHO05D007228 1.1e-63 247.3 221 56.1
HanXRQChr10g0314031 Helianthus annuus HOM05D005679 ORTHO05D007228 2.2e-62 243.0 207 57.0
Haze_19592 Corylus avellana HOM05D005679 ORTHO05D007228 2.8e-62 242.7 182 69.8
HanXRQChr11g0340241 Helianthus annuus HOM05D005679 ORTHO05D007228 8.2e-62 241.1 220 56.4
TWI53G0317 Tripterygium wilfordii HOM05D005679 ORTHO05D007228 1.8e-61 240.0 183 62.8
SHI23954 Sapria himalayana HOM05D005679 ORTHO05D007228 2.4e-61 239.6 220 55.0
Nitab4.5_0002400g0100 Nicotiana tabacum HOM05D005679 ORTHO05D007228 4.5e-60 235.3 236 52.5
QL07p039311 Quercus lobata HOM05D005679 ORTHO05D007228 4.5e-60 235.3 180 64.4
Os05g0357700 Oryza sativa ssp. japonica HOM05D005679 ORTHO05D007228 1.4e-58 230.3 222 53.6
HPP92_006355 Vanilla planifolia HOM05D005679 ORTHO05D007228 2.1e-57 226.5 222 50.9
AUR62028550 Chenopodium quinoa HOM05D005679 ORTHO05D007228 8.2e-54 214.5 151 63.6
HanXRQChr10g0314011 Helianthus annuus HOM05D005679 ORTHO05D007228 9.1e-53 211.1 180 57.8
ECA248G1272 Erigeron canadensis HOM05D005679 ORTHO05D007228 4.5e-52 208.8 184 56.0
Mapoly0066s0044 Marchantia polymorpha HOM05D005679 ORTHO05D007228 7.7e-52 208.0 226 46.9
ATR0568G150 Amborella trichopoda HOM05D005679 ORTHO05D007228 1.3e-51 207.2 180 58.3
Ca_26654_v3 Cicer arietinum L. HOM05D005679 ORTHO05D007228 2.5e-50 203.0 154 63.6
TAR636G2700 Trochodendron aralioides HOM05D005679 ORTHO05D007228 4.4e-47 192.2 198 53.0
Sed0004661 Sechium edule HOM05D005679 ORTHO05D007228 7.4e-47 191.4 154 63.0
Sed0012745 Sechium edule HOM05D005679 ORTHO05D007228 2.2e-46 189.9 208 49.5
unitig_749.g14296 Utricularia gibba HOM05D005679 ORTHO05D007228 1.4e-45 187.2 181 55.8
AUR62033502 Chenopodium quinoa HOM05D005679 ORTHO05D007228 1.2e-41 174.1 186 48.4
SMO203G0038 Selaginella moellendorffii HOM05D005679 ORTHO05D007228 2.1e-41 173.3 247 38.1
AagrBONN_evm.TU.Sc2ySwM_228.1072 Anthoceros agrestis HOM05D005679 ORTHO05D007228 3.6e-41 172.6 162 52.5
Pp3c4_17190 Physcomitrium patens HOM05D005679 ORTHO05D007228 6.7e-40 168.3 216 40.7
Zm00001eb285910 Zea mays HOM05D005679 ORTHO05D007228 1.1e-39 167.5 228 43.4
SMO327G0022 Selaginella moellendorffii HOM05D005679 ORTHO05D007228 2.8e-38 162.9 223 39.9
CBR_g961 Chara braunii HOM05D005679 ORTHO05D007228 8.2e-38 161.4 220 37.3
Lj9A526G37 Lonicera japonica HOM05D005679 ORTHO05D007228 3.8e-35 152.5 150 54.0
HanXRQChr10g0313891 Helianthus annuus HOM05D005679 ORTHO05D007228 1.9e-34 150.2 158 52.5
CDE02G3258 Ceratophyllum demersum HOM05D005679 ORTHO05D007228 2.0e-31 140.2 107 60.7
SEGI_36814 Sequoiadendron giganteum HOM05D005679 ORTHO05D007228 3.8e-27 125.9 136 46.3
Cre01.g042150 Chlamydomonas reinhardtii HOM05D005679 ORTHO05D007228 3.2e-26 122.9 162 42.0
Lj2A135G55 Lonicera japonica HOM05D005679 ORTHO05D007228 9.4e-26 121.3 72 73.6
Lsat_1_v5_gn_1_48021 Lactuca sativa HOM05D005679 ORTHO05D007228 6.1e-25 118.6 89 60.7
MCO10G317 Micromonas commoda HOM05D005679 ORTHO05D007228 9.8e-23 111.3 145 42.1
Gorai.006G155900 Gossypium raimondii HOM05D005679 ORTHO05D007228 4.9e-22 109.0 74 66.2
Gohir.D09G135950 Gossypium hirsutum HOM05D005679 ORTHO05D007228 1.4e-21 107.5 74 64.9
CARHR130580 Cardamine hirsuta HOM05D005679 ORTHO05D007228 7.0e-21 105.1 108 54.6
Dinv31674 Davidia involucrata HOM05D005679 ORTHO05D007228 2.3e-19 100.1 168 38.7
DCAR_009157 Daucus carota HOM05D005679 ORTHO05D007228 2.9e-19 99.8 115 42.6
PRCOL_00001551 Prasinoderma coloniale HOM05D005679 ORTHO05D007228 2.9e-14 83.2 135 38.5
SEGI_00479 Sequoiadendron giganteum HOM05D005679 ORTHO05D007228 3.7e-14 82.8 71 50.7
HanXRQChr10g0313971 Helianthus annuus HOM05D005679 ORTHO05D007228 5.0e-11 72.4 57 59.6
arahy.Tifrunner.gnm1.ann1.7P1BGF Arachis hypogaea HOM05D005679 ORTHO05D003748 6.2e-09 65.5 59 52.5
Lj2A135T55 Lonicera japonica HOM05D005679 ORTHO05D007228 8.0e-09 65.1 79 40.5
Actinidia14313 Actinidia chinensis HOM05D005679 ORTHO05D007228 5.8e-07 58.9 72 45.8
AUR62033501 Chenopodium quinoa HOM05D005679 ORTHO05D007228 4.9e-06 55.8 71 46.5
SalBow3G2040 Salvia bowleyana HOM05D005679 ORTHO05D007228 6.4e-06 55.5 71 42.3


User provided reference genes

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