Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.7G109900 Prunus persica HOM05D004140 ORTHO05D006116 5.4e-237 823.9 414 100.0
FvH4_6g18720 Fragaria vesca HOM05D004140 ORTHO05D006116 4.9e-206 721.1 414 87.0
MD12G1036400 Malus domestica HOM05D004140 ORTHO05D006116 1.4e-200 703.0 397 88.2
RcHm_v2.0_Chr3g0473691 Rosa chinensis HOM05D004140 ORTHO05D006116 4.0e-200 701.4 392 88.8
MD14G1023200 Malus domestica HOM05D004140 ORTHO05D006116 1.4e-197 693.0 400 86.5
FAN14G5862 Fragaria x ananassa HOM05D004140 ORTHO05D006116 3.0e-195 685.3 389 87.4
FAN02G3405 Fragaria x ananassa HOM05D004140 ORTHO05D006116 1.5e-194 682.9 392 86.2
FAN05G3313 Fragaria x ananassa HOM05D004140 ORTHO05D006116 1.5e-194 682.9 389 86.9
FAN05G2644 Fragaria x ananassa HOM05D004140 ORTHO05D006116 1.6e-193 679.5 403 84.9
QL07p038742 Quercus lobata HOM05D004140 ORTHO05D006116 5.7e-186 654.4 391 81.8
QL07p038993 Quercus lobata HOM05D004140 ORTHO05D006116 5.7e-186 654.4 391 81.8
Manes.08G025400 Manihot esculenta HOM05D004140 ORTHO05D006116 1.1e-181 640.2 393 80.7
CANSAT80G0330 Cannabis sativa HOM05D004140 ORTHO05D006116 5.1e-179 631.3 393 80.7
GSVIVG01033846001 Vitis vinifera HOM05D004140 ORTHO05D006116 7.4e-178 627.5 392 78.6
CiPaw.09G014200 Carya illinoinensis HOM05D004140 ORTHO05D006116 3.7e-177 625.2 394 77.4
PGR142G4281 Punica granatum HOM05D004140 ORTHO05D006116 2.4e-176 622.5 392 78.3
Actinidia18162 Actinidia chinensis HOM05D004140 ORTHO05D006116 5.3e-176 621.3 392 78.1
Medtr7g030010 Medicago truncatula HOM05D004140 ORTHO05D006116 5.3e-176 621.3 392 76.5
Medtr7g038740 Medicago truncatula HOM05D004140 ORTHO05D006116 5.3e-176 621.3 392 76.5
Aqoxy2G01189 Aquilegia oxysepala HOM05D004140 ORTHO05D006116 6.9e-176 620.9 392 77.0
COL.COLO4_29732 Corchorus olitorius HOM05D004140 ORTHO05D006116 9.0e-176 620.5 393 78.4
Nn6g34895 Nelumbo nucifera HOM05D004140 ORTHO05D006116 1.5e-175 619.8 392 77.3
TWI77G1027 Tripterygium wilfordii HOM05D004140 ORTHO05D006116 1.5e-175 619.8 393 78.1
Glyma.11G176309 Glycine max HOM05D004140 ORTHO05D006116 2.6e-175 619.0 392 76.3
Glyma.01G077300 Glycine max HOM05D004140 ORTHO05D006116 7.7e-175 617.5 392 76.5
Eucgr.K02037 Eucalyptus grandis HOM05D004140 ORTHO05D006116 3.8e-174 615.1 392 76.8
Rhsim07G0139000 Rhododendron simsii HOM05D004140 ORTHO05D006116 3.8e-174 615.1 392 76.0
Actinidia14741 Actinidia chinensis HOM05D004140 ORTHO05D006116 6.5e-174 614.4 392 76.8
CsaV3_3G037290 Cucumis sativus L. HOM05D004140 ORTHO05D006116 1.1e-173 613.6 392 78.6
Gohir.D04G099900 Gossypium hirsutum HOM05D004140 ORTHO05D006116 3.2e-173 612.1 393 77.1
Thecc.05G089300 Theobroma cacao HOM05D004140 ORTHO05D006116 3.2e-173 612.1 394 77.4
MELO3C009474.2 Cucumis melo HOM05D004140 ORTHO05D006116 4.2e-173 611.7 392 78.1
Gorai.009G402800 Gossypium raimondii HOM05D004140 ORTHO05D006116 7.2e-173 610.9 393 76.8
Sed0020948 Sechium edule HOM05D004140 ORTHO05D006116 7.2e-173 610.9 392 78.6
Sc02g0000260 Simmondsia chinensis HOM05D004140 ORTHO05D006116 2.1e-172 609.4 392 75.5
Lj2A137T30 Lonicera japonica HOM05D004140 ORTHO05D006116 4.6e-172 608.2 392 76.8
Lalb_Chr07g0194001 Lupinus albus HOM05D004140 ORTHO05D006116 6.1e-172 607.8 392 74.7
Nitab4.5_0008893g0010 Nicotiana tabacum HOM05D004140 ORTHO05D006116 1.4e-171 606.7 392 76.5
Ca_19610_v3 Cicer arietinum L. HOM05D004140 ORTHO05D006116 6.7e-171 604.4 393 74.3
Nitab4.5_0000071g0150 Nicotiana tabacum HOM05D004140 ORTHO05D006116 4.3e-170 601.7 392 75.8
Sopen04g018570 Solanum pennellii HOM05D004140 ORTHO05D006116 1.3e-169 600.1 392 75.3
Cc06_g05780 Coffea canephora HOM05D004140 ORTHO05D006116 2.2e-169 599.4 392 74.7
Gohir.A04G062800 Gossypium hirsutum HOM05D004140 ORTHO05D006116 2.2e-169 599.4 393 75.8
Hma1.2p1_0084F.1_g043830 Hydrangea macrophylla HOM05D004140 ORTHO05D006116 2.2e-169 599.4 394 72.8
TAR633G1381 Trochodendron aralioides HOM05D004140 ORTHO05D006116 6.3e-169 597.8 392 75.0
Potri.004G090400 Populus trichocarpa HOM05D004140 ORTHO05D006116 1.8e-168 596.3 394 75.1
Haze_19613 Corylus avellana HOM05D004140 ORTHO05D006116 4.1e-168 595.1 457 67.2
VMungo1383G3240 Vigna mungo HOM05D004140 ORTHO05D006116 4.1e-168 595.1 392 73.7
CAN.G1407.2 Capsicum annuum HOM05D004140 ORTHO05D006116 9.1e-168 594.0 392 74.2
arahy.Tifrunner.gnm1.ann1.0JB8QE Arachis hypogaea HOM05D004140 ORTHO05D006116 2.6e-167 592.4 419 69.9
arahy.Tifrunner.gnm1.ann1.IX7NGG Arachis hypogaea HOM05D004140 ORTHO05D006116 2.6e-167 592.4 419 69.9
Lj1g0011596 Lotus japonicus HOM05D004140 ORTHO05D006116 2.2e-166 589.3 395 73.4
ClCG10G018960 Citrullus lanatus HOM05D004140 ORTHO05D006116 3.8e-166 588.6 392 76.0
Sabra04G0060700 Salix brachista HOM05D004140 ORTHO05D006116 5.0e-166 588.2 401 73.1
Migut.J01039 Erythranthe guttata HOM05D004140 ORTHO05D006116 3.2e-165 585.5 394 74.9
SGA_v2.0_scaffold13G06716 Striga asiatica HOM05D004140 ORTHO05D006116 2.7e-164 582.4 392 74.5
CDE08G0731 Ceratophyllum demersum HOM05D004140 ORTHO05D006116 1.5e-162 576.6 391 71.1
CDE06G1324 Ceratophyllum demersum HOM05D004140 ORTHO05D006116 2.0e-162 576.2 388 71.6
Atru.chr8.1534 Acer truncatum HOM05D004140 ORTHO05D006116 3.3e-162 575.5 396 72.5
SalBow3G3032 Salvia bowleyana HOM05D004140 ORTHO05D006116 5.7e-162 574.7 392 72.7
ECA248G2777 Erigeron canadensis HOM05D004140 ORTHO05D000452 1.3e-161 573.5 390 71.3
THA.LOC104823220 Tarenaya hassleriana HOM05D004140 ORTHO05D006116 6.3e-161 571.2 393 72.5
ATR0776G070 Amborella trichopoda HOM05D004140 ORTHO05D006116 2.4e-160 569.3 392 70.7
HanXRQChr05g0163581 Helianthus annuus HOM05D004140 ORTHO05D006116 3.1e-160 568.9 392 71.2
TPR.G39122 Trifolium pratense HOM05D004140 ORTHO05D006116 2.2e-158 562.8 427 65.8
Duzib093G1424 Durio zibethinus HOM05D004140 ORTHO05D006116 3.2e-157 558.9 393 72.0
Phvul.008G154100 Phaseolus vulgaris HOM05D004140 ORTHO05D006116 2.1e-156 556.2 392 69.9
AT5G03900 Arabidopsis thaliana HOM05D004140 ORTHO05D006116 6.1e-156 554.7 393 70.0
Lsat_1_v5_gn_5_164821 Lactuca sativa HOM05D004140 ORTHO05D006116 5.2e-155 551.6 392 69.4
Dinv31688 Davidia involucrata HOM05D004140 ORTHO05D006116 1.7e-153 546.6 344 77.3
Ciclev10013333m.g Citrus clementina HOM05D004140 ORTHO05D006116 4.1e-152 542.0 390 68.5
Peaxi162Scf01227g00030 Petunia axillaris HOM05D004140 ORTHO05D006116 4.1e-152 542.0 392 69.6
Carub.0006s0285 Capsella rubella HOM05D004140 ORTHO05D006116 3.5e-151 538.9 393 67.9
AL6G13480 Arabidopsis lyrata HOM05D004140 ORTHO05D006116 4.5e-151 538.5 393 68.2
PSO339G4989 Papaver somniferum HOM05D004140 ORTHO05D006116 4.5e-151 538.5 394 67.0
unitig_578.g16025 Utricularia gibba HOM05D004140 ORTHO05D006116 3.8e-150 535.4 398 68.6
PSO384G3764 Papaver somniferum HOM05D004140 ORTHO05D006116 6.5e-150 534.6 394 66.2
C02p01600 Brassica napus HOM05D004140 ORTHO05D006116 5.5e-149 531.6 393 67.2
A10p32220 Brassica napus HOM05D004140 ORTHO05D006116 7.2e-149 531.2 393 66.7
BraA02t04791Z Brassica rapa HOM05D004140 ORTHO05D006116 7.2e-149 531.2 393 67.4
BraA10t45265Z Brassica rapa HOM05D004140 ORTHO05D006116 7.2e-149 531.2 393 66.7
EL10Ac7g16915 Beta vulgaris HOM05D004140 ORTHO05D006116 1.2e-148 530.4 386 67.6
BolC9t60037H Brassica oleracea HOM05D004140 ORTHO05D006116 2.1e-148 529.6 393 66.7
Ah.15g090870 Amaranthus hybridus HOM05D004140 ORTHO05D006116 8.0e-148 527.7 388 66.8
BolC2t06125H Brassica oleracea HOM05D004140 ORTHO05D006116 1.0e-147 527.3 393 67.2
BcaC06g32093 Brassica carinata HOM05D004140 ORTHO05D006116 1.4e-147 526.9 393 66.7
Sp6g38830 Schrenkiella parvula HOM05D004140 ORTHO05D006116 1.8e-147 526.6 393 66.7
Aa31LG1G21380 Aethionema arabicum HOM05D004140 ORTHO05D006116 8.8e-147 524.2 393 66.4
CARHR209360 Cardamine hirsuta HOM05D004140 ORTHO05D006116 8.8e-147 524.2 393 67.2
C09p73020 Brassica napus HOM05D004140 ORTHO05D006116 4.8e-145 518.5 409 63.8
Thhalv10013253m.g Eutrema salsugineum HOM05D004140 ORTHO05D006116 4.1e-144 515.4 393 65.6
vmacro14235 Vaccinium macrocarpon HOM05D004140 ORTHO05D006116 2.6e-138 496.1 665 44.1
AUR62028518 Chenopodium quinoa HOM05D004140 ORTHO05D006116 9.8e-138 494.2 413 62.7
AUR62006183 Chenopodium quinoa HOM05D004140 ORTHO05D006116 1.8e-136 490.0 435 59.8
Os02g0533000 Oryza sativa ssp. japonica HOM05D004140 ORTHO05D006116 4.7e-132 475.3 389 62.0
Cfa016609 Carpinus fangiana HOM05D004140 ORTHO05D006116 1.5e-130 470.3 298 75.5
BcaB05g21796 Brassica carinata HOM05D004140 ORTHO05D006116 4.9e-129 465.3 392 61.5
Zm00001eb242770 Zea mays HOM05D004140 ORTHO05D006116 6.4e-129 464.9 394 60.2
Hund19931 Selenicereus undatus HOM05D004140 ORTHO05D006116 1.7e-126 456.8 497 51.3
Hma1.2p1_0820F.1_g223840 Hydrangea macrophylla HOM05D004140 ORTHO05D006116 1.9e-125 453.4 348 65.2
Migut.J01040 Erythranthe guttata HOM05D004140 ORTHO05D006116 4.7e-124 448.7 393 60.8
HPP92_005468 Vanilla planifolia HOM05D004140 ORTHO05D006116 6.2e-124 448.4 392 59.4
RcHm_v2.0_Chr3g0473761 Rosa chinensis HOM05D004140 ORTHO05D006116 9.8e-122 441.0 412 60.7
Solyc04g049130.4 Solanum lycopersicum HOM05D004140 ORTHO05D006116 4.6e-119 432.2 275 76.7
DCAR_013387 Daucus carota HOM05D004140 ORTHO05D006116 8.6e-118 427.9 275 73.5
Pp3c24_800 Physcomitrium patens HOM05D004140 ORTHO05D006116 7.3e-117 424.9 396 56.8
CSS0000051 Camellia sinensis var. sinensis HOM05D004140 ORTHO05D006116 2.1e-116 423.3 279 76.3
HanXRQChr01g0001941 Helianthus annuus HOM05D004140 ORTHO05D006116 2.1e-116 423.3 417 54.4
Mapoly0014s0147 Marchantia polymorpha HOM05D004140 ORTHO05D006116 4.4e-114 415.6 395 54.9
AagrBONN_evm.TU.Sc2ySwM_117.4009 Anthoceros agrestis HOM05D004140 ORTHO05D006116 4.1e-104 382.5 381 51.4
DCAR_020746 Daucus carota HOM05D004140 ORTHO05D006116 4.2e-96 355.9 427 48.0
Nitab4.5_0004212g0030 Nicotiana tabacum HOM05D004140 ORTHO05D006116 3.5e-95 352.8 397 51.4
CBR_g12587 Chara braunii HOM05D004140 ORTHO05D006116 1.1e-93 347.8 412 46.4
FvH4_6g18750 Fragaria vesca HOM05D004140 ORTHO05D006116 1.1e-93 347.8 368 55.4
SMO137G0276 Selaginella moellendorffii HOM05D004140 ORTHO05D006116 6.9e-91 338.6 389 47.6
Psat3g173280 Pisum sativum HOM05D004140 ORTHO05D006116 6.7e-86 322.0 216 71.3
HanXRQChr01g0001931 Helianthus annuus HOM05D004140 ORTHO05D006116 3.3e-85 319.7 300 56.0
DCAR_007754 Daucus carota HOM05D004140 ORTHO05D006116 3.6e-84 316.2 275 59.6
PRCOL_00000272 Prasinoderma coloniale HOM05D004140 ORTHO05D006116 2.0e-74 283.9 393 39.2
MCO08G276 Micromonas commoda HOM05D004140 ORTHO05D006116 4.6e-71 272.7 399 41.4
Psat3g173320 Pisum sativum HOM05D004140 ORTHO05D006116 6.1e-63 245.7 149 77.2
Lj2A1003T9 Lonicera japonica HOM05D004140 ORTHO05D006116 7.9e-63 245.4 187 67.9
RcHm_v2.0_Chr2g0168601 Rosa chinensis HOM05D004140 ORTHO05D006116 8.2e-60 235.3 270 52.6
Cre07.g338350 Chlamydomonas reinhardtii HOM05D004140 ORTHO05D006116 2.4e-59 233.8 409 38.6
Cpa.g.sc5.17 Carica papaya HOM05D004140 ORTHO05D006116 1.6e-55 221.1 270 47.4
BcaC03g12977 Brassica carinata HOM05D004140 ORTHO05D006116 4.6e-55 219.5 159 67.9
FvH4_6g48690 Fragaria vesca HOM05D004140 ORTHO05D006116 1.4e-54 218.0 263 51.0
FAN02G1609 Fragaria x ananassa HOM05D004140 ORTHO05D006116 5.1e-54 216.1 248 52.8
SEGI_29241 Sequoiadendron giganteum HOM05D004140 ORTHO05D006116 6.5e-49 199.1 164 64.0
FAN09G1572 Fragaria x ananassa HOM05D004140 ORTHO05D006116 7.4e-45 185.7 367 37.9
FvH4_6g48680 Fragaria vesca HOM05D004140 ORTHO05D045602 1.4e-43 181.4 251 47.8
FAN14G0184 Fragaria x ananassa HOM05D004140 ORTHO05D006116 5.3e-43 179.5 258 45.7
RcHm_v2.0_Chr3g0473711 Rosa chinensis HOM05D004140 ORTHO05D006116 2.6e-42 177.2 122 75.4
FAN14G1397 Fragaria x ananassa HOM05D004140 ORTHO05D045602 2.2e-41 174.1 244 45.9
PGSC0003DMG400019058 Solanum tuberosum HOM05D004140 ORTHO05D006116 1.9e-40 171.0 115 72.2
RcHm_v2.0_Chr3g0473721 Rosa chinensis HOM05D004140 ORTHO05D006116 2.7e-39 167.2 100 79.0
Cpa.g.sc5.18 Carica papaya HOM05D004140 ORTHO05D006116 8.8e-38 162.2 97 84.5
Cc00_g34730 Coffea canephora HOM05D004140 ORTHO05D006116 5.3e-35 152.9 100 77.0
DCAR_013386 Daucus carota HOM05D004140 ORTHO05D006116 2.0e-29 134.4 112 62.5
SEGI_36218 Sequoiadendron giganteum HOM05D004140 ORTHO05D006116 2.2e-28 131.0 96 66.7
FvH4_6g48651 Fragaria vesca HOM05D004140 ORTHO05D045442 4.5e-26 123.2 222 39.6
SEGI_03177 Sequoiadendron giganteum HOM05D004140 ORTHO05D006116 4.5e-26 123.2 105 57.1
FAN09G0971 Fragaria x ananassa HOM05D004140 ORTHO05D045442 1.0e-25 122.1 223 40.8
FvH4_6g48650 Fragaria vesca HOM05D004140 ORTHO05D197702 9.5e-24 115.5 224 37.5
Peaxi162Scf00858g00312 Petunia axillaris HOM05D004140 ORTHO05D006116 4.0e-22 110.2 399 29.3
arahy.Tifrunner.gnm1.ann1.LXEN71 Arachis hypogaea HOM05D000344 ORTHO05D005296 2.7e-18 97.4 63 73.0
SHI23815 Sapria himalayana HOM05D004140 ORTHO05D006116 2.7e-18 97.4 102 49.0
arahy.Tifrunner.gnm1.ann1.2FV8W6 Arachis hypogaea HOM05D000344 ORTHO05D005296 1.7e-17 94.7 63 71.4
MCO05G565 Micromonas commoda HOM05D004140 ORTHO05D269347 2.6e-13 80.9 144 32.6
FvH4_6g18760 Fragaria vesca HOM05D004140 ORTHO05D006116 8.3e-12 75.9 45 82.2
SEGI_11477 Sequoiadendron giganteum HOM05D004140 ORTHO05D006116 1.1e-11 75.5 92 43.5
RcHm_v2.0_Chr3g0473731 Rosa chinensis HOM05D004140 ORTHO05D006116 3.5e-10 70.5 37 89.2
FAN05G4745 Fragaria x ananassa HOM05D000532 ORTHO05D002414 1.7e-09 68.2 212 28.3
RcHm_v2.0_Chr6g0257921 Rosa chinensis HOM05D004140 ORTHO05D006116 3.0e-09 67.4 37 81.1
FAN14G0820 Fragaria x ananassa HOM05D004140 ORTHO05D006116 5.0e-09 66.6 37 86.5
C02p01230 Brassica napus HOM05D004140 ORTHO05D024608 1.5e-08 65.1 38 73.7
C02p01370 Brassica napus HOM05D004140 ORTHO05D024608 1.5e-08 65.1 38 73.7
C02p01440 Brassica napus HOM05D004140 ORTHO05D024608 1.5e-08 65.1 38 73.7
BolC2t06113H Brassica oleracea HOM05D004140 ORTHO05D024608 1.5e-08 65.1 38 73.7
FAN05G3929 Fragaria x ananassa HOM05D004140 ORTHO05D018624 2.5e-08 64.3 37 83.8
FAN05G4146 Fragaria x ananassa HOM05D004140 ORTHO05D006116 2.5e-08 64.3 37 83.8
FAN14G4481 Fragaria x ananassa HOM05D004140 ORTHO05D203265 1.2e-07 62.0 159 34.6
SalBow5G2618 Salvia bowleyana HOM05D004325 ORTHO05D005470 6.8e-06 56.2 79 43.0


User provided reference genes

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